Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0201231 Rosa chinensis HOM05D005885 ORTHO05D342624 1.7e-26 122.1 68 100.0
TPR.G19593 Trifolium pratense HOM05D005885 ORTHO05D008127 1.0e-12 76.3 58 62.1
MELO3C005584.2 Cucumis melo HOM05D005885 ORTHO05D008127 1.8e-12 75.5 51 68.6
Lalb_Chr09g0324521 Lupinus albus HOM05D005885 ORTHO05D008127 1.8e-12 75.5 51 68.6
Sed0024879 Sechium edule HOM05D005885 ORTHO05D008127 1.8e-12 75.5 51 68.6
RcHm_v2.0_Chr7g0201341 Rosa chinensis HOM05D005885 ORTHO05D008127 3.0e-12 74.7 51 68.6
CSS0003633 Camellia sinensis var. sinensis HOM05D005885 ORTHO05D008127 4.0e-12 74.3 50 70.0
CANSAT21G1830 Cannabis sativa HOM05D005885 ORTHO05D008127 4.0e-12 74.3 51 66.7
CsaV3_5G003710 Cucumis sativus L. HOM05D005885 ORTHO05D008127 4.0e-12 74.3 51 66.7
Glyma.11G029500 Glycine max HOM05D005885 ORTHO05D008127 4.0e-12 74.3 49 69.4
Prupe.5G080300 Prunus persica HOM05D005885 ORTHO05D008127 4.0e-12 74.3 49 69.4
PGR031G0042 Punica granatum HOM05D005885 ORTHO05D008127 4.0e-12 74.3 51 66.7
VMungo1215G0841 Vigna mungo HOM05D005885 ORTHO05D008127 4.0e-12 74.3 51 66.7
Cfa012022 Carpinus fangiana HOM05D005885 ORTHO05D008127 5.2e-12 73.9 51 66.7
Medtr5g011780 Medicago truncatula HOM05D005885 ORTHO05D008127 5.2e-12 73.9 51 66.7
Potri.001G116800 Populus trichocarpa HOM05D005885 ORTHO05D008127 5.2e-12 73.9 48 70.8
Hund11561 Selenicereus undatus HOM05D005885 ORTHO05D008127 6.8e-12 73.6 51 66.7
PGSC0003DMG400003932 Solanum tuberosum HOM05D005885 ORTHO05D008127 8.8e-12 73.2 50 68.0
TWI81G1092 Tripterygium wilfordii HOM05D005885 ORTHO05D008127 8.8e-12 73.2 48 68.8
CAN.G630.67 Capsicum annuum HOM05D005885 ORTHO05D008127 1.2e-11 72.8 50 68.0
Psat2g179680 Pisum sativum HOM05D005885 ORTHO05D008127 1.2e-11 72.8 51 64.7
SalBow6G1575 Salvia bowleyana HOM05D005885 ORTHO05D008127 1.2e-11 72.8 50 68.0
MD04G1078900 Malus domestica HOM05D005885 ORTHO05D008127 1.5e-11 72.4 49 67.3
THA.LOC104809442 Tarenaya hassleriana HOM05D005885 ORTHO05D008127 1.5e-11 72.4 48 68.8
Atru.chr9.1440 Acer truncatum HOM05D005885 ORTHO05D008127 2.0e-11 72.0 50 68.0
arahy.Tifrunner.gnm1.ann1.FFRS2J Arachis hypogaea HOM05D005885 ORTHO05D008127 2.0e-11 72.0 49 67.3
arahy.Tifrunner.gnm1.ann1.J86H7Q Arachis hypogaea HOM05D005885 ORTHO05D008127 2.0e-11 72.0 49 67.3
FvH4_5g00790 Fragaria vesca HOM05D005885 ORTHO05D008127 2.0e-11 72.0 49 67.3
Aa31LG1G2270 Aethionema arabicum HOM05D005885 ORTHO05D008127 2.6e-11 71.6 50 62.0
BcaB03g13192 Brassica carinata HOM05D005885 ORTHO05D008127 2.6e-11 71.6 49 65.3
Gohir.D03G158300 Gossypium hirsutum HOM05D005885 ORTHO05D008127 2.6e-11 71.6 49 65.3
Gorai.003G166800 Gossypium raimondii HOM05D005885 ORTHO05D008127 2.6e-11 71.6 49 65.3
Hma1.2p1_0138F.1_g063110 Hydrangea macrophylla HOM05D005885 ORTHO05D008127 2.6e-11 71.6 50 66.0
Manes.01G072400 Manihot esculenta HOM05D005885 ORTHO05D008127 2.6e-11 71.6 48 66.7
PSO478G5024 Papaver somniferum HOM05D005885 ORTHO05D008127 2.6e-11 71.6 50 66.0
PSO782G2305 Papaver somniferum HOM05D005885 ORTHO05D008127 2.6e-11 71.6 50 66.0
Carub.0001s1203 Capsella rubella HOM05D005885 ORTHO05D008127 3.4e-11 71.2 48 66.7
FAN18G2769 Fragaria x ananassa HOM05D005885 ORTHO05D000042 4.4e-11 70.9 58 62.1
Lj2g0010887 Lotus japonicus HOM05D005885 ORTHO05D008127 4.4e-11 70.9 49 67.3
Thecc.03G262500 Theobroma cacao HOM05D005885 ORTHO05D008127 4.4e-11 70.9 49 63.3
Ca_06688_v3 Cicer arietinum L. HOM05D005885 ORTHO05D008127 5.7e-11 70.5 58 58.6
Eucgr.D01985 Eucalyptus grandis HOM05D005885 ORTHO05D008127 5.7e-11 70.5 51 62.7
ATR0810G103 Amborella trichopoda HOM05D005885 ORTHO05D008127 7.5e-11 70.1 48 66.7
Ciclev10019819m.g Citrus clementina HOM05D005885 ORTHO05D008127 7.5e-11 70.1 48 66.7
Migut.A00839 Erythranthe guttata HOM05D005885 ORTHO05D008127 7.5e-11 70.1 50 66.0
AL1G23690 Arabidopsis lyrata HOM05D005885 ORTHO05D008127 9.8e-11 69.7 48 64.6
CiPaw.11G147000 Carya illinoinensis HOM05D005885 ORTHO05D008127 9.8e-11 69.7 49 65.3
Solyc08g079530.3 Solanum lycopersicum HOM05D005885 ORTHO05D008127 9.8e-11 69.7 50 66.0
Cpa.g.sc29.82 Carica papaya HOM05D005885 ORTHO05D008127 1.3e-10 69.3 50 64.0
Dinv37758 Davidia involucrata HOM05D005885 ORTHO05D008127 1.7e-10 68.9 50 66.0
FAN08G2136 Fragaria x ananassa HOM05D005885 ORTHO05D000042 1.7e-10 68.9 49 65.3
Glyma.01G212300 Glycine max HOM05D005885 ORTHO05D008127 1.7e-10 68.9 51 62.7
AT1G12370 Arabidopsis thaliana HOM05D005885 ORTHO05D008127 2.2e-10 68.6 48 64.6
HanXRQChr07g0188641 Helianthus annuus HOM05D005885 ORTHO05D008127 2.2e-10 68.6 49 63.3
Sopen08g027900 Solanum pennellii HOM05D005885 ORTHO05D008127 2.2e-10 68.6 48 66.7
TAR375G0281 Trochodendron aralioides HOM05D005885 ORTHO05D008127 2.2e-10 68.6 48 66.7
TAR375G0948 Trochodendron aralioides HOM05D005885 ORTHO05D008127 2.2e-10 68.6 48 66.7
MSTRG.25552 Avicennia marina HOM05D005885 ORTHO05D008127 2.8e-10 68.2 50 64.0
Duzib205G0406 Durio zibethinus HOM05D005885 ORTHO05D008127 2.8e-10 68.2 49 63.3
Nn4g26386 Nelumbo nucifera HOM05D005885 ORTHO05D008127 2.8e-10 68.2 48 64.6
Sp1g10970 Schrenkiella parvula HOM05D005885 ORTHO05D008127 2.8e-10 68.2 48 64.6
ECA233G1449 Erigeron canadensis HOM05D005885 ORTHO05D008127 4.8e-10 67.4 49 61.2
Lsat_1_v5_gn_6_9740 Lactuca sativa HOM05D005885 ORTHO05D008127 4.8e-10 67.4 49 61.2
Aqoxy7G00633 Aquilegia oxysepala HOM05D005885 ORTHO05D008127 6.3e-10 67.0 48 62.5
ClCG01G003610 Citrullus lanatus HOM05D005885 ORTHO05D008127 6.3e-10 67.0 62 56.5
Thhalv10007458m.g Eutrema salsugineum HOM05D005885 ORTHO05D008127 6.3e-10 67.0 48 64.6
A08p32870 Brassica napus HOM05D005885 ORTHO05D008127 1.4e-09 65.9 51 62.7
COL.COLO4_23868 Corchorus olitorius HOM05D005885 ORTHO05D008127 1.4e-09 65.9 51 60.8
ECA233G5871 Erigeron canadensis HOM05D005885 ORTHO05D008127 1.4e-09 65.9 51 60.8
BraA08t35209Z Brassica rapa HOM05D005885 ORTHO05D008127 3.1e-09 64.7 52 61.5
CARHR012660 Cardamine hirsuta HOM05D005885 ORTHO05D008127 3.1e-09 64.7 48 62.5
CDE12G0141 Ceratophyllum demersum HOM05D005885 ORTHO05D008127 4.1e-09 64.3 50 60.0
QL12p015122 Quercus lobata HOM05D005885 ORTHO05D008127 4.1e-09 64.3 65 52.3
AagrBONN_evm.TU.Sc2ySwM_117.35 Anthoceros agrestis HOM05D005885 ORTHO05D008127 7.0e-09 63.5 63 52.4
FAN13G1573 Fragaria x ananassa HOM05D005885 ORTHO05D008127 7.0e-09 63.5 49 63.3
unitig_744.g24322 Utricularia gibba HOM05D005885 ORTHO05D008127 1.6e-08 62.4 63 47.6
SMO137G0163 Selaginella moellendorffii HOM05D005885 ORTHO05D008127 2.0e-08 62.0 50 58.0
MBI04_g35270_MAGBIO Magnolia biondii HOM05D005885 ORTHO05D008127 2.7e-08 61.6 63 52.4
CBR_g17934 Chara braunii HOM05D005885 ORTHO05D008127 3.5e-08 61.2 48 56.2
Haze_09046 Corylus avellana HOM05D005885 ORTHO05D008127 5.9e-08 60.5 75 45.3
BolC8t49167H Brassica oleracea HOM05D005885 ORTHO05D008127 1.0e-07 59.7 65 49.2
Peaxi162Scf00271g00133 Petunia axillaris HOM05D005885 ORTHO05D008127 1.0e-07 59.7 50 62.0
Cre12.g533000 Chlamydomonas reinhardtii HOM05D005885 ORTHO05D008127 1.3e-07 59.3 52 51.9
Mapoly0149s0026 Marchantia polymorpha HOM05D005885 ORTHO05D008127 1.3e-07 59.3 49 53.1
Oeu040058.2 Olea europaea HOM05D005885 ORTHO05D008127 1.3e-07 59.3 68 47.1
Nitab4.5_0003534g0090 Nicotiana tabacum HOM05D005885 ORTHO05D008127 1.7e-07 58.9 75 45.3
Sabra01G0089600 Salix brachista HOM05D005885 ORTHO05D008127 1.7e-07 58.9 76 44.7
FAN04G1127 Fragaria x ananassa HOM05D005885 ORTHO05D008127 2.9e-07 58.2 74 44.6
Pp3c5_3400 Physcomitrium patens HOM05D005885 ORTHO05D008127 5.0e-07 57.4 49 51.0
GSVIVG01004905001 Vitis vinifera HOM05D005885 ORTHO05D008127 5.0e-07 57.4 81 39.5
MCO01G340 Micromonas commoda HOM05D005885 ORTHO05D008127 1.5e-06 55.8 50 46.0
Nitab4.5_0010237g0040 Nicotiana tabacum HOM05D005885 ORTHO05D008127 2.5e-06 55.1 50 56.0
AUR62017386 Chenopodium quinoa HOM05D005885 ORTHO05D008127 7.2e-06 53.5 70 47.1
PRCOL_00005710 Prasinoderma coloniale HOM05D005885 ORTHO05D008127 7.2e-06 53.5 50 50.0
SGA_v2.0_scaffold120G32808 Striga asiatica HOM05D005885 ORTHO05D008127 7.2e-06 53.5 67 47.8
MCO16G424 Micromonas commoda HOM05D005885 ORTHO05D008127 9.5e-06 53.1 50 50.0


User provided reference genes

Program Settings