Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0199581 Rosa chinensis HOM05D004105 ORTHO05D029789 1.3e-38 162.5 78 100.0
AL8G40650 Arabidopsis lyrata HOM05D004105 ORTHO05D005649 8.8e-32 139.8 73 89.0
AT5G63570 Arabidopsis thaliana HOM05D004105 ORTHO05D005649 8.8e-32 139.8 73 89.0
BcaB04g19926 Brassica carinata HOM05D004105 ORTHO05D005649 8.8e-32 139.8 73 89.0
BcaC01g02611 Brassica carinata HOM05D004105 ORTHO05D005649 8.8e-32 139.8 73 89.0
BcaC04g23339 Brassica carinata HOM05D004105 ORTHO05D005649 8.8e-32 139.8 73 89.0
A06p30190 Brassica napus HOM05D004105 ORTHO05D005649 8.8e-32 139.8 73 89.0
A09p08350 Brassica napus HOM05D004105 ORTHO05D005649 8.8e-32 139.8 73 89.0
C03p62870 Brassica napus HOM05D004105 ORTHO05D005649 8.8e-32 139.8 73 89.0
C09p09420 Brassica napus HOM05D004105 ORTHO05D005649 8.8e-32 139.8 73 89.0
BolC3t18541H Brassica oleracea HOM05D004105 ORTHO05D005649 8.8e-32 139.8 73 89.0
BolC9t53854H Brassica oleracea HOM05D004105 ORTHO05D005649 8.8e-32 139.8 73 89.0
BraA09t36484Z Brassica rapa HOM05D004105 ORTHO05D005649 8.8e-32 139.8 73 89.0
Carub.0008s2430 Capsella rubella HOM05D004105 ORTHO05D005649 8.8e-32 139.8 73 89.0
Thhalv10004138m.g Eutrema salsugineum HOM05D004105 ORTHO05D005649 8.8e-32 139.8 73 89.0
Sp2g26660 Schrenkiella parvula HOM05D004105 ORTHO05D005649 8.8e-32 139.8 73 89.0
THA.LOC104818177 Tarenaya hassleriana HOM05D004105 ORTHO05D005649 8.8e-32 139.8 73 89.0
Aa31LG1G18370 Aethionema arabicum HOM05D004105 ORTHO05D005649 1.2e-31 139.4 73 89.0
BcaB02g09750 Brassica carinata HOM05D004105 ORTHO05D005649 1.2e-31 139.4 73 87.7
Peaxi162Scf00334g00121 Petunia axillaris HOM05D004105 ORTHO05D005649 1.2e-31 139.4 73 89.0
QL11p026924 Quercus lobata HOM05D004105 ORTHO05D005649 1.2e-31 139.4 73 89.0
Sc04g0000430 Simmondsia chinensis HOM05D004105 ORTHO05D005649 1.2e-31 139.4 73 89.0
Atru.chr6.1872 Acer truncatum HOM05D004105 ORTHO05D005649 1.5e-31 139.0 73 89.0
Actinidia08890 Actinidia chinensis HOM05D004105 ORTHO05D005649 1.5e-31 139.0 73 89.0
MSTRG.13687 Avicennia marina HOM05D004105 ORTHO05D005649 1.5e-31 139.0 73 89.0
Duzib084G0440 Durio zibethinus HOM05D004105 ORTHO05D005649 1.5e-31 139.0 73 89.0
Eucgr.K00727 Eucalyptus grandis HOM05D004105 ORTHO05D005649 1.5e-31 139.0 73 89.0
Gohir.A07G048500 Gossypium hirsutum HOM05D004105 ORTHO05D005649 1.5e-31 139.0 73 89.0
Gohir.D07G052800 Gossypium hirsutum HOM05D004105 ORTHO05D005649 1.5e-31 139.0 73 89.0
Gorai.001G055800 Gossypium raimondii HOM05D004105 ORTHO05D005649 1.5e-31 139.0 73 89.0
Thecc.03G135100 Theobroma cacao HOM05D004105 ORTHO05D005649 1.5e-31 139.0 73 89.0
BraA06t25970Z Brassica rapa HOM05D004105 ORTHO05D005649 2.0e-31 138.7 73 87.7
CiPaw.11G003700 Carya illinoinensis HOM05D004105 ORTHO05D005649 2.0e-31 138.7 73 87.7
ClCG09G016340 Citrullus lanatus HOM05D004105 ORTHO05D005649 2.0e-31 138.7 73 87.7
MELO3C018572.2 Cucumis melo HOM05D004105 ORTHO05D005649 2.0e-31 138.7 73 87.7
CsaV3_7G007260 Cucumis sativus L. HOM05D004105 ORTHO05D005649 2.0e-31 138.7 73 87.7
Nn4g22230 Nelumbo nucifera HOM05D004105 ORTHO05D005649 2.0e-31 138.7 73 89.0
GSVIVG01008589001 Vitis vinifera HOM05D004105 ORTHO05D005649 2.0e-31 138.7 73 87.7
Hma1.2p1_0572F.1_g181070 Hydrangea macrophylla HOM05D004105 ORTHO05D005649 2.6e-31 138.3 73 87.7
unitig_32.g11186 Utricularia gibba HOM05D004105 ORTHO05D005649 2.6e-31 138.3 73 87.7
Cfa018749 Carpinus fangiana HOM05D004105 ORTHO05D005649 3.4e-31 137.9 73 87.7
Cc10_g12640 Coffea canephora HOM05D004105 ORTHO05D005649 3.4e-31 137.9 73 86.3
Haze_07185 Corylus avellana HOM05D004105 ORTHO05D005649 3.4e-31 137.9 73 87.7
Migut.E00611 Erythranthe guttata HOM05D004105 ORTHO05D005649 3.4e-31 137.9 73 87.7
Migut.E00706 Erythranthe guttata HOM05D004105 ORTHO05D005649 3.4e-31 137.9 73 87.7
PSO017G4116 Papaver somniferum HOM05D004105 ORTHO05D005649 3.4e-31 137.9 73 87.7
PSO478G2355 Papaver somniferum HOM05D004105 ORTHO05D005649 3.4e-31 137.9 73 87.7
Sed0023678 Sechium edule HOM05D004105 ORTHO05D005649 3.4e-31 137.9 73 86.3
CARHR277440 Cardamine hirsuta HOM05D004105 ORTHO05D005649 4.4e-31 137.5 73 87.7
HanXRQChr02g0034141 Helianthus annuus HOM05D004105 ORTHO05D005649 4.4e-31 137.5 73 87.7
Lsat_1_v5_gn_1_32701 Lactuca sativa HOM05D004105 ORTHO05D005649 4.4e-31 137.5 73 87.7
TWI23G0168 Tripterygium wilfordii HOM05D004105 ORTHO05D005649 4.4e-31 137.5 73 87.7
TWI39G0681 Tripterygium wilfordii HOM05D004105 ORTHO05D005649 4.4e-31 137.5 73 87.7
CSS0005977 Camellia sinensis var. sinensis HOM05D004105 ORTHO05D005649 5.7e-31 137.1 73 87.7
CSS0020466 Camellia sinensis var. sinensis HOM05D004105 ORTHO05D005649 5.7e-31 137.1 73 87.7
DCAR_021646 Daucus carota HOM05D004105 ORTHO05D005649 5.7e-31 137.1 73 87.7
Ca_15293_v3 Cicer arietinum L. HOM05D004105 ORTHO05D005649 7.5e-31 136.7 73 86.3
Lj9C482T3 Lonicera japonica HOM05D004105 ORTHO05D005649 7.5e-31 136.7 73 87.7
Rhsim12G0177900 Rhododendron simsii HOM05D004105 ORTHO05D005649 7.5e-31 136.7 73 87.7
AUR62029559 Chenopodium quinoa HOM05D004105 ORTHO05D005649 9.8e-31 136.3 73 86.3
AUR62029560 Chenopodium quinoa HOM05D004105 ORTHO05D005649 9.8e-31 136.3 73 86.3
AUR62034822 Chenopodium quinoa HOM05D004105 ORTHO05D005649 9.8e-31 136.3 73 86.3
Ciclev10031414m.g Citrus clementina HOM05D004105 ORTHO05D005649 9.8e-31 136.3 73 86.3
Medtr3g118070 Medicago truncatula HOM05D004105 ORTHO05D005649 1.3e-30 136.0 73 84.9
Rhsim08G0193500 Rhododendron simsii HOM05D004105 ORTHO05D005649 1.3e-30 136.0 73 86.3
TAR622G0102 Trochodendron aralioides HOM05D004105 ORTHO05D005649 1.3e-30 136.0 73 87.7
AL5G28210 Arabidopsis lyrata HOM05D004105 ORTHO05D005649 1.7e-30 135.6 73 89.0
AT3G48730 Arabidopsis thaliana HOM05D004105 ORTHO05D005649 1.7e-30 135.6 73 89.0
Carub.0005s1489 Capsella rubella HOM05D004105 ORTHO05D005649 1.7e-30 135.6 73 89.0
MD06G1136900 Malus domestica HOM05D004105 ORTHO05D005649 1.7e-30 135.6 73 86.3
MD14G1151700 Malus domestica HOM05D004105 ORTHO05D005649 1.7e-30 135.6 73 86.3
Psat5g001920 Pisum sativum HOM05D004105 ORTHO05D005649 1.7e-30 135.6 73 84.9
vmacro16732 Vaccinium macrocarpon HOM05D004105 ORTHO05D005649 1.7e-30 135.6 73 86.3
Lj1g0022155 Lotus japonicus HOM05D004105 ORTHO05D005649 2.8e-30 134.8 73 84.9
PGR083G1562 Punica granatum HOM05D004105 ORTHO05D005649 2.8e-30 134.8 73 84.9
Hund02468 Selenicereus undatus HOM05D004105 ORTHO05D005649 2.8e-30 134.8 73 84.9
Dinv11203 Davidia involucrata HOM05D004105 ORTHO05D005649 3.7e-30 134.4 73 83.6
FvH4_5g08950 Fragaria vesca HOM05D004105 ORTHO05D005649 3.7e-30 134.4 73 84.9
FAN04G0399 Fragaria x ananassa HOM05D004105 ORTHO05D005649 3.7e-30 134.4 73 84.9
FAN18G1589 Fragaria x ananassa HOM05D004105 ORTHO05D005649 3.7e-30 134.4 73 84.9
Nitab4.5_0002672g0010 Nicotiana tabacum HOM05D004105 ORTHO05D029789 3.7e-30 134.4 73 86.3
RcHm_v2.0_Chr7g0189421 Rosa chinensis HOM05D004105 ORTHO05D005649 3.7e-30 134.4 73 84.9
SGA_v2.0_scaffold99G29471 Striga asiatica HOM05D004105 ORTHO05D005649 3.7e-30 134.4 73 84.9
EL10Ac5g11355 Beta vulgaris HOM05D004105 ORTHO05D005649 4.8e-30 134.0 73 86.3
CAN.G619.6 Capsicum annuum HOM05D004105 ORTHO05D005649 4.8e-30 134.0 73 87.7
FAN13G0496 Fragaria x ananassa HOM05D004105 ORTHO05D005649 4.8e-30 134.0 73 83.6
Glyma.06G002900 Glycine max HOM05D004105 ORTHO05D005649 4.8e-30 134.0 73 83.6
Gohir.A03G053920 Gossypium hirsutum HOM05D004105 ORTHO05D005649 4.8e-30 134.0 73 84.9
Gohir.A03G054100 Gossypium hirsutum HOM05D004105 ORTHO05D005649 4.8e-30 134.0 73 84.9
Gohir.D03G112900 Gossypium hirsutum HOM05D004105 ORTHO05D005649 4.8e-30 134.0 73 84.9
Gohir.D03G112950 Gossypium hirsutum HOM05D004105 ORTHO05D005649 4.8e-30 134.0 73 84.9
Nitab4.5_0001089g0010 Nicotiana tabacum HOM05D004105 ORTHO05D005649 4.8e-30 134.0 73 87.7
Solyc04g009200.3 Solanum lycopersicum HOM05D004105 ORTHO05D005649 4.8e-30 134.0 73 87.7
PGSC0003DMG400032546 Solanum tuberosum HOM05D004105 ORTHO05D005649 4.8e-30 134.0 73 87.7
TPR.G38501 Trifolium pratense HOM05D004105 ORTHO05D005649 4.8e-30 134.0 73 83.6
Zm00001eb291360 Zea mays HOM05D004105 ORTHO05D005649 4.8e-30 134.0 73 86.3
FAN08G1339 Fragaria x ananassa HOM05D004105 ORTHO05D005649 6.3e-30 133.7 73 84.9
Glyma.04G002900 Glycine max HOM05D004105 ORTHO05D005649 8.3e-30 133.3 73 82.2
Manes.06G122800 Manihot esculenta HOM05D004105 ORTHO05D005649 1.1e-29 132.9 73 86.3
Nitab4.5_0011777g0030 Nicotiana tabacum HOM05D004105 ORTHO05D005649 1.1e-29 132.9 73 86.3
Cfa018748 Carpinus fangiana HOM05D004105 ORTHO05D005649 1.4e-29 132.5 73 86.3
Phvul.009G118500 Phaseolus vulgaris HOM05D004105 ORTHO05D005649 1.4e-29 132.5 73 82.2
ECA247G3132 Erigeron canadensis HOM05D004105 ORTHO05D005649 1.8e-29 132.1 73 84.9
Os08g0532200 Oryza sativa ssp. japonica HOM05D004105 ORTHO05D005649 1.8e-29 132.1 73 84.9
Peaxi162Scf00681g00117 Petunia axillaris HOM05D004105 ORTHO05D005649 1.8e-29 132.1 73 86.3
Sopen04g004330 Solanum pennellii HOM05D004105 ORTHO05D005649 1.8e-29 132.1 73 86.3
VMungo1309G1206 Vigna mungo HOM05D004105 ORTHO05D005649 1.8e-29 132.1 73 82.2
Gorai.003G119100 Gossypium raimondii HOM05D004105 ORTHO05D005649 3.1e-29 131.3 73 83.6
HanXRQChr09g0273511 Helianthus annuus HOM05D004105 ORTHO05D005649 4.1e-29 131.0 73 84.9
TAR371G1205 Trochodendron aralioides HOM05D004105 ORTHO05D005649 5.4e-29 130.6 73 84.9
MBI04_g30114_MAGBIO Magnolia biondii HOM05D004105 ORTHO05D005649 7.0e-29 130.2 73 83.6
MBI11_g13058_MAGBIO Magnolia biondii HOM05D004105 ORTHO05D005649 7.0e-29 130.2 73 83.6
Sp5g13290 Schrenkiella parvula HOM05D004105 ORTHO05D005649 7.0e-29 130.2 73 86.3
arahy.Tifrunner.gnm1.ann1.26LP8U Arachis hypogaea HOM05D004105 ORTHO05D005649 9.1e-29 129.8 73 83.6
arahy.Tifrunner.gnm1.ann1.NV4Y6S Arachis hypogaea HOM05D004105 ORTHO05D005649 9.1e-29 129.8 73 83.6
Potri.015G101100 Populus trichocarpa HOM05D004105 ORTHO05D005649 9.1e-29 129.8 73 83.6
CDE05G1664 Ceratophyllum demersum HOM05D004105 ORTHO05D005649 1.2e-28 129.4 73 83.6
Aqoxy3G01668 Aquilegia oxysepala HOM05D004105 ORTHO05D005649 1.6e-28 129.0 73 83.6
ATR0582G244 Amborella trichopoda HOM05D004105 ORTHO05D005649 4.5e-28 127.5 73 80.8
SEGI_17449 Sequoiadendron giganteum HOM05D004105 ORTHO05D005649 1.0e-27 126.3 73 78.1
Actinidia18331 Actinidia chinensis HOM05D004105 ORTHO05D005649 3.8e-27 124.4 66 86.4
Lalb_Chr08g0246741 Lupinus albus HOM05D004105 ORTHO05D005649 3.8e-27 124.4 73 79.5
HanXRQChr16g0498371 Helianthus annuus HOM05D004105 ORTHO05D005649 6.5e-27 123.6 73 79.5
SMO337G0012 Selaginella moellendorffii HOM05D004105 ORTHO05D005649 8.5e-27 123.2 73 76.7
arahy.Tifrunner.gnm1.ann1.IMIB52 Arachis hypogaea HOM05D004105 ORTHO05D005649 4.2e-26 120.9 73 76.7
arahy.Tifrunner.gnm1.ann1.M8Q52W Arachis hypogaea HOM05D004105 ORTHO05D005649 4.2e-26 120.9 73 76.7
HPP92_000338 Vanilla planifolia HOM05D004105 ORTHO05D005649 1.4e-24 115.9 73 75.3
Pp3c16_12390 Physcomitrium patens HOM05D004105 ORTHO05D005649 1.8e-24 115.5 73 69.9
Mapoly0094s0038 Marchantia polymorpha HOM05D004105 ORTHO05D005649 4.0e-24 114.4 73 74.0
SHI10683 Sapria himalayana HOM05D004105 ORTHO05D005649 8.8e-24 113.2 93 59.1
Haze_07186 Corylus avellana HOM05D004105 ORTHO05D005649 2.0e-23 112.1 78 75.6
Pp3c27_4150 Physcomitrium patens HOM05D004105 ORTHO05D005649 2.0e-23 112.1 73 67.1
Sabra15G0121600 Salix brachista HOM05D004105 ORTHO05D005649 9.8e-23 109.8 116 53.4
Cre03.g158000 Chlamydomonas reinhardtii HOM05D004105 ORTHO05D005649 3.7e-22 107.8 73 68.5
MBI04_g30438_MAGBIO Magnolia biondii HOM05D004105 ORTHO05D005649 8.3e-22 106.7 65 76.9
TAR629G2661 Trochodendron aralioides HOM05D004105 ORTHO05D005649 2.4e-21 105.1 76 65.8
ECA232G0449 Erigeron canadensis HOM05D004105 ORTHO05D005649 1.6e-20 102.4 60 85.0
PRCOL_00001317 Prasinoderma coloniale HOM05D004105 ORTHO05D005649 3.5e-20 101.3 73 67.1
MCO04G178 Micromonas commoda HOM05D004105 ORTHO05D005649 1.1e-18 96.3 69 62.3
Actinidia36826 Actinidia chinensis HOM05D004105 ORTHO05D030859 7.2e-18 93.6 51 84.3
Nn3g16369 Nelumbo nucifera HOM05D004105 ORTHO05D005649 1.5e-15 85.9 68 66.2
AagrBONN_evm.TU.Sc2ySwM_368.3191 Anthoceros agrestis HOM05D004105 ORTHO05D005649 3.4e-15 84.7 73 56.2
AUR62005532 Chenopodium quinoa HOM05D004105 ORTHO05D005649 8.3e-14 80.1 101 46.5
Duzib205G0778 Durio zibethinus HOM05D004105 ORTHO05D005649 2.4e-13 78.6 42 92.9
Thhalv10010337m.g Eutrema salsugineum HOM05D004105 ORTHO05D005649 2.4e-13 78.6 42 92.9
Potri.012G103000 Populus trichocarpa HOM05D004105 ORTHO05D005649 3.2e-13 78.2 45 86.7
Cpa.g.sc4.152 Carica papaya HOM05D004105 ORTHO05D005649 5.4e-13 77.4 42 90.5
Duzib068G0759 Durio zibethinus HOM05D004105 ORTHO05D005649 7.0e-13 77.0 42 90.5
Manes.14G048100 Manihot esculenta HOM05D004105 ORTHO05D005649 6.6e-11 70.5 42 83.3
Glyma.14G221932 Glycine max HOM05D004105 ORTHO05D029789 1.5e-10 69.3 42 81.0
Prupe.5G146800 Prunus persica HOM05D004105 ORTHO05D005649 7.3e-10 67.0 35 91.4
Oeu036699.1 Olea europaea HOM05D004105 ORTHO05D005649 9.5e-10 66.6 35 88.6
Cpa.g.sc4.153 Carica papaya HOM05D004105 ORTHO05D030859 1.2e-09 66.2 30 86.7
CBR_g49915 Chara braunii HOM05D004105 ORTHO05D005649 6.2e-09 63.9 40 75.0
Psat3g146080 Pisum sativum HOM05D004105 ORTHO05D029789 2.6e-07 58.5 34 82.4


User provided reference genes

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