Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0190801 Rosa chinensis HOM05D006589 ORTHO05D008350 0.0e+00 1347.4 682 100.0
FvH4_5g07670 Fragaria vesca HOM05D006589 ORTHO05D008350 0.0e+00 1208.7 684 89.5
FAN18G3475 Fragaria x ananassa HOM05D006589 ORTHO05D008350 0.0e+00 1203.0 684 89.2
FAN04G1748 Fragaria x ananassa HOM05D006589 ORTHO05D008350 0.0e+00 1201.0 685 89.8
FAN13G0522 Fragaria x ananassa HOM05D006589 ORTHO05D008350 0.0e+00 1196.0 683 89.2
FAN08G0518 Fragaria x ananassa HOM05D006589 ORTHO05D008350 0.0e+00 1194.1 683 88.9
Prupe.5G155500 Prunus persica HOM05D006589 ORTHO05D008350 0.0e+00 1153.7 682 86.4
MD14G1162400 Malus domestica HOM05D006589 ORTHO05D008350 0.0e+00 1103.6 686 81.8
CANSAT80G0035 Cannabis sativa HOM05D006589 ORTHO05D008350 5.6e-300 1033.9 688 77.0
Cfa018872 Carpinus fangiana HOM05D006589 ORTHO05D008350 1.6e-299 1032.3 692 76.7
Dinv04849 Davidia involucrata HOM05D006589 ORTHO05D008350 1.4e-298 1029.2 689 75.8
Haze_07256 Corylus avellana HOM05D006589 ORTHO05D008350 3.1e-298 1028.1 696 76.1
CsaV3_1G000740 Cucumis sativus L. HOM05D006589 ORTHO05D008350 4.9e-296 1020.8 687 76.0
CSS0007976 Camellia sinensis var. sinensis HOM05D006589 ORTHO05D008350 1.4e-295 1019.2 685 76.1
Thecc.03G124600 Theobroma cacao HOM05D006589 ORTHO05D008350 5.5e-295 1017.3 684 75.0
Gohir.D07G057600 Gossypium hirsutum HOM05D006589 ORTHO05D008350 7.4e-292 1006.9 688 74.7
Eucgr.B00143 Eucalyptus grandis HOM05D006589 ORTHO05D008350 1.4e-290 1002.7 640 76.2
Gohir.A07G053200 Gossypium hirsutum HOM05D006589 ORTHO05D008350 1.4e-290 1002.7 688 74.0
Gorai.001G061100 Gossypium raimondii HOM05D006589 ORTHO05D008350 1.5e-289 999.2 685 75.3
Nitab4.5_0005327g0070 Nicotiana tabacum HOM05D006589 ORTHO05D008350 1.0e-288 996.5 687 73.8
COL.COLO4_16830 Corchorus olitorius HOM05D006589 ORTHO05D008350 2.2e-288 995.3 695 73.5
Potri.015G091700 Populus trichocarpa HOM05D006589 ORTHO05D008350 1.4e-287 992.6 683 73.8
Manes.14G054400 Manihot esculenta HOM05D006589 ORTHO05D008350 2.5e-287 991.9 689 74.0
Nn4g22414 Nelumbo nucifera HOM05D006589 ORTHO05D008350 7.2e-287 990.3 692 73.6
Sabra15G0113500 Salix brachista HOM05D006589 ORTHO05D008350 9.4e-287 989.9 683 72.8
QL10p004744 Quercus lobata HOM05D006589 ORTHO05D008350 1.6e-286 989.2 698 73.8
Actinidia36794 Actinidia chinensis HOM05D006589 ORTHO05D008350 2.7e-286 988.4 686 73.3
Nitab4.5_0001664g0100 Nicotiana tabacum HOM05D006589 ORTHO05D008350 4.6e-286 987.6 688 73.7
Ciclev10019152m.g Citrus clementina HOM05D006589 ORTHO05D008350 1.0e-285 986.5 687 74.8
Atru.chr9.1023 Acer truncatum HOM05D006589 ORTHO05D008350 3.9e-285 984.6 619 76.6
Sed0022036 Sechium edule HOM05D006589 ORTHO05D008350 1.1e-284 983.0 671 74.8
TAR622G1334 Trochodendron aralioides HOM05D006589 ORTHO05D008350 1.1e-284 983.0 687 73.9
PGR083G2113 Punica granatum HOM05D006589 ORTHO05D008350 3.3e-284 981.5 692 72.7
Peaxi162Scf00089g00326 Petunia axillaris HOM05D006589 ORTHO05D008350 4.1e-282 974.5 692 73.6
Sc22g0004160 Simmondsia chinensis HOM05D006589 ORTHO05D008350 6.9e-282 973.8 684 73.7
Glyma.04G193700 Glycine max HOM05D006589 ORTHO05D008350 5.9e-281 970.7 688 72.2
Ca_15262_v3 Cicer arietinum L. HOM05D006589 ORTHO05D008350 3.8e-280 968.0 680 72.4
Aqoxy5G03523 Aquilegia oxysepala HOM05D006589 ORTHO05D008350 5.5e-279 964.1 688 72.2
ClCG06G017720 Citrullus lanatus HOM05D006589 ORTHO05D008350 7.2e-279 963.8 687 73.4
Medtr3g075050 Medicago truncatula HOM05D006589 ORTHO05D008350 7.9e-278 960.3 676 70.4
Migut.I00491 Erythranthe guttata HOM05D006589 ORTHO05D008350 2.3e-277 958.7 693 71.9
Psat5g140160 Pisum sativum HOM05D006589 ORTHO05D008350 2.3e-277 958.7 679 71.1
THA.LOC104798952 Tarenaya hassleriana HOM05D006589 ORTHO05D008350 3.0e-277 958.4 690 70.9
Glyma.06G172400 Glycine max HOM05D006589 ORTHO05D008350 3.9e-277 958.0 687 72.3
Lj1g0010015 Lotus japonicus HOM05D006589 ORTHO05D008350 7.4e-276 953.7 692 70.5
TWI23G0930 Tripterygium wilfordii HOM05D006589 ORTHO05D008350 1.1e-274 949.9 684 69.9
Solyc03g111050.3 Solanum lycopersicum HOM05D006589 ORTHO05D008350 1.8e-274 949.1 689 72.0
Cpa.g.sc4.99 Carica papaya HOM05D006589 ORTHO05D008350 9.1e-274 946.8 687 71.8
EL10As4g23464 Beta vulgaris HOM05D006589 ORTHO05D008350 1.5e-273 946.0 684 68.9
Sopen03g030220 Solanum pennellii HOM05D006589 ORTHO05D008350 4.5e-273 944.5 687 71.8
SalBow5G1883 Salvia bowleyana HOM05D006589 ORTHO05D008350 5.9e-273 944.1 677 71.2
SalBow5G0933 Salvia bowleyana HOM05D006589 ORTHO05D008350 1.3e-272 943.0 678 70.9
PSO063G3222 Papaver somniferum HOM05D006589 ORTHO05D008350 3.8e-272 941.4 702 70.2
PGSC0003DMG400015251 Solanum tuberosum HOM05D006589 ORTHO05D008350 1.1e-271 939.9 689 70.8
Duzib205G1155 Durio zibethinus HOM05D006589 ORTHO05D008350 2.5e-271 938.7 691 70.9
arahy.Tifrunner.gnm1.ann1.DGQ22E Arachis hypogaea HOM05D006589 ORTHO05D008350 1.2e-270 936.4 698 69.1
PSO782G1921 Papaver somniferum HOM05D006589 ORTHO05D008350 3.6e-270 934.9 693 68.4
arahy.Tifrunner.gnm1.ann1.RTQA9M Arachis hypogaea HOM05D006589 ORTHO05D008350 3.9e-269 931.4 698 68.8
TPR.G26148 Trifolium pratense HOM05D006589 ORTHO05D008350 5.2e-269 931.0 692 68.6
CARHR157250 Cardamine hirsuta HOM05D006589 ORTHO05D008350 2.2e-267 925.6 639 71.4
Phvul.009G168200 Phaseolus vulgaris HOM05D006589 ORTHO05D008350 2.8e-267 925.2 685 67.7
Lj5A99T74 Lonicera japonica HOM05D006589 ORTHO05D008350 6.3e-267 924.1 713 68.6
Aa31LG4G17110 Aethionema arabicum HOM05D006589 ORTHO05D008350 8.2e-267 923.7 603 73.6
Thhalv10010171m.g Eutrema salsugineum HOM05D006589 ORTHO05D008350 1.8e-266 922.5 639 72.0
Lalb_Chr11g0069681 Lupinus albus HOM05D006589 ORTHO05D008350 5.3e-266 921.0 696 68.8
AL5G27930 Arabidopsis lyrata HOM05D006589 ORTHO05D008350 5.9e-265 917.5 637 71.1
BcaB05g23014 Brassica carinata HOM05D006589 ORTHO05D008350 1.3e-264 916.4 625 72.2
BcaC09g49867 Brassica carinata HOM05D006589 ORTHO05D008350 1.3e-264 916.4 639 71.0
DCAR_007473 Daucus carota HOM05D006589 ORTHO05D008350 1.7e-264 916.0 683 68.5
BolC1t03137H Brassica oleracea HOM05D006589 ORTHO05D008350 2.9e-264 915.2 639 70.9
Carub.0005s1468 Capsella rubella HOM05D006589 ORTHO05D008350 5.0e-264 914.4 638 71.2
C01p32170 Brassica napus HOM05D006589 ORTHO05D008350 8.5e-264 913.7 639 70.7
Sp5g13530 Schrenkiella parvula HOM05D006589 ORTHO05D008350 8.5e-264 913.7 677 68.7
BraA01t02452Z Brassica rapa HOM05D006589 ORTHO05D008350 2.5e-263 912.1 629 71.2
A01p25610 Brassica napus HOM05D006589 ORTHO05D008350 1.2e-262 909.8 629 71.1
Hund02417 Selenicereus undatus HOM05D006589 ORTHO05D008350 1.2e-262 909.8 689 69.1
Lsat_1_v5_gn_5_13320 Lactuca sativa HOM05D006589 ORTHO05D008350 1.6e-257 892.9 677 66.0
HanXRQChr05g0158451 Helianthus annuus HOM05D006589 ORTHO05D008350 1.9e-255 885.9 677 65.6
CDE02G2664 Ceratophyllum demersum HOM05D006589 ORTHO05D008350 1.6e-254 882.9 638 70.7
AT3G48500 Arabidopsis thaliana HOM05D006589 ORTHO05D008350 9.8e-252 873.6 636 67.9
MBI08_g33782_MAGBIO Magnolia biondii HOM05D006589 ORTHO05D008350 5.4e-250 867.8 687 67.0
MELO3C026221.2 Cucumis melo HOM05D006589 ORTHO05D008350 3.7e-243 845.1 810 59.3
ECA246G1540 Erigeron canadensis HOM05D006589 ORTHO05D008350 8.3e-243 844.0 614 67.8
Cc04_g10160 Coffea canephora HOM05D006589 ORTHO05D008350 1.4e-242 843.2 562 74.9
Rhsim12G0172500 Rhododendron simsii HOM05D006589 ORTHO05D008350 4.1e-242 841.6 627 66.3
GSVIVG01008490001 Vitis vinifera HOM05D006589 ORTHO05D008350 1.6e-241 839.7 557 76.1
CAN.G352.47 Capsicum annuum HOM05D006589 ORTHO05D008350 7.3e-239 830.9 559 75.3
AUR62025863 Chenopodium quinoa HOM05D006589 ORTHO05D008350 4.6e-233 811.6 684 62.9
HPP92_003572 Vanilla planifolia HOM05D006589 ORTHO05D008350 1.5e-231 806.6 565 68.1
AUR62029828 Chenopodium quinoa HOM05D006589 ORTHO05D008350 1.6e-230 803.1 557 70.7
vmacro16654 Vaccinium macrocarpon HOM05D006589 ORTHO05D008350 1.1e-226 790.4 819 53.1
Ah.02g115320 Amaranthus hybridus HOM05D006589 ORTHO05D008350 3.4e-220 768.8 688 60.6
SGA_v2.0_scaffold161G37820 Striga asiatica HOM05D006589 ORTHO05D008350 1.1e-213 747.3 551 69.0
CiPaw.12G036500 Carya illinoinensis HOM05D006589 ORTHO05D008350 1.4e-210 736.9 475 78.3
Zm00001eb365570 Zea mays HOM05D006589 ORTHO05D008350 1.6e-201 706.8 583 60.4
vmacro16714 Vaccinium macrocarpon HOM05D006589 ORTHO05D008350 4.0e-189 665.6 792 48.5
Oeu006374.4 Olea europaea HOM05D006589 ORTHO05D000550 5.7e-167 592.0 421 70.5
unitig_0.g1070 Utricularia gibba HOM05D006589 ORTHO05D008350 3.3e-151 539.7 375 70.4
Os01g0901900 Oryza sativa ssp. japonica HOM05D006589 ORTHO05D008350 2.0e-143 513.8 431 59.6
Mapoly0120s0021 Marchantia polymorpha HOM05D006589 ORTHO05D008350 1.1e-125 454.9 526 48.5
FAN21G1369 Fragaria x ananassa HOM05D006589 ORTHO05D008350 3.5e-124 449.9 335 73.4
FAN21G3066 Fragaria x ananassa HOM05D006589 ORTHO05D008350 3.5e-124 449.9 335 73.4
ATR0060G001 Amborella trichopoda HOM05D006589 ORTHO05D008350 4.4e-119 433.0 349 64.8
Pp3c18_13570 Physcomitrium patens HOM05D006589 ORTHO05D008350 8.0e-113 412.1 550 44.5
Ca_15265_v3 Cicer arietinum L. HOM05D006589 ORTHO05D008350 4.3e-106 389.8 279 72.4
RcHm_v2.0_Chr1g0380381 Rosa chinensis HOM05D006589 ORTHO05D008350 4.4e-95 353.2 265 71.7
unitig_0.g1069 Utricularia gibba HOM05D006589 ORTHO05D008350 1.4e-93 348.2 299 60.9
SMO356G0597 Selaginella moellendorffii HOM05D006589 ORTHO05D008350 1.0e-83 315.5 569 36.2
ATR0686G112 Amborella trichopoda HOM05D006589 ORTHO05D008350 1.3e-78 298.5 228 63.2
FAN25G1587 Fragaria x ananassa HOM05D006589 ORTHO05D008350 1.9e-58 231.5 144 84.0
CBR_g31403 Chara braunii HOM05D006589 ORTHO05D008350 2.5e-58 231.1 550 29.8
HPP92_003575 Vanilla planifolia HOM05D006589 ORTHO05D008350 5.3e-56 223.4 206 57.3
SEGI_40144 Sequoiadendron giganteum HOM05D006589 ORTHO05D008350 1.2e-52 212.2 270 45.9
CDE09G0508 Ceratophyllum demersum HOM05D006589 ORTHO05D008350 1.4e-43 182.2 180 55.0
arahy.Tifrunner.gnm1.ann1.85RMBE Arachis hypogaea HOM05D006589 ORTHO05D008350 4.5e-31 140.6 142 55.6
arahy.Tifrunner.gnm1.ann1.Q1JBFY Arachis hypogaea HOM05D006589 ORTHO05D008350 9.4e-29 132.9 124 55.6
RcHm_v2.0_Chr1g0380361 Rosa chinensis HOM05D006589 ORTHO05D008350 1.2e-18 99.4 76 84.2
MCO14G318 Micromonas commoda HOM05D006589 ORTHO05D008350 8.0e-12 76.6 110 40.9
Cre07.g348500 Chlamydomonas reinhardtii HOM05D006589 ORTHO05D008350 7.0e-08 63.5 97 36.1


User provided reference genes

Program Settings