Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0188791 Rosa chinensis HOM05D004329 ORTHO05D005516 0.0e+00 1172.9 602 100.0
FAN18G1836 Fragaria x ananassa HOM05D004329 ORTHO05D005516 0.0e+00 1110.5 606 94.2
FvH4_5g09400 Fragaria vesca HOM05D004329 ORTHO05D005516 0.0e+00 1105.5 604 94.0
FAN13G1968 Fragaria x ananassa HOM05D004329 ORTHO05D005516 0.0e+00 1091.3 617 91.9
FAN04G0329 Fragaria x ananassa HOM05D004329 ORTHO05D005516 5.0e-308 1060.4 600 92.2
Prupe.5G142700 Prunus persica HOM05D004329 ORTHO05D005516 4.2e-299 1030.8 601 87.0
MD14G1148000 Malus domestica HOM05D004329 ORTHO05D005516 6.7e-297 1023.5 601 86.2
FAN08G1859 Fragaria x ananassa HOM05D004329 ORTHO05D005516 2.8e-295 1018.1 563 93.6
MD06G1131700 Malus domestica HOM05D004329 ORTHO05D005516 2.6e-293 1011.5 591 86.3
Cfa018712 Carpinus fangiana HOM05D004329 ORTHO05D005516 1.2e-285 986.1 603 83.3
CANSAT80G0883 Cannabis sativa HOM05D004329 ORTHO05D005516 4.5e-285 984.2 593 84.1
CANSAT80G0741 Cannabis sativa HOM05D004329 ORTHO05D005516 6.5e-284 980.3 594 84.0
Haze_07104 Corylus avellana HOM05D004329 ORTHO05D005516 1.4e-281 972.6 627 79.9
TWI39G0623 Tripterygium wilfordii HOM05D004329 ORTHO05D005516 2.3e-281 971.8 601 82.0
QL10p000650 Quercus lobata HOM05D004329 ORTHO05D005516 4.0e-281 971.1 591 83.6
Duzib205G0720 Durio zibethinus HOM05D004329 ORTHO05D005516 1.5e-280 969.1 603 81.9
Atru.chr6.1908 Acer truncatum HOM05D004329 ORTHO05D005516 3.4e-280 968.0 600 82.8
Thecc.03G139600 Theobroma cacao HOM05D004329 ORTHO05D005516 1.7e-279 965.7 603 81.9
Ciclev10031005m.g Citrus clementina HOM05D004329 ORTHO05D005516 2.0e-277 958.7 599 82.0
Gohir.D07G051400 Gossypium hirsutum HOM05D004329 ORTHO05D005516 1.7e-276 955.7 601 81.2
Gorai.001G054500 Gossypium raimondii HOM05D004329 ORTHO05D005516 7.2e-275 950.3 615 79.5
Gohir.A07G047200 Gossypium hirsutum HOM05D004329 ORTHO05D005516 8.0e-274 946.8 607 80.1
Potri.015G105600 Populus trichocarpa HOM05D004329 ORTHO05D005516 8.9e-273 943.3 603 79.6
TAR374G0799 Trochodendron aralioides HOM05D004329 ORTHO05D005516 4.9e-271 937.6 603 78.6
ClCG03G012650 Citrullus lanatus HOM05D004329 ORTHO05D005516 1.4e-270 936.0 593 79.6
Actinidia18306 Actinidia chinensis HOM05D004329 ORTHO05D005516 9.2e-270 933.3 601 78.5
Rhsim08G0196600 Rhododendron simsii HOM05D004329 ORTHO05D005516 1.2e-269 932.9 603 78.8
CsaV3_1G043340 Cucumis sativus L. HOM05D004329 ORTHO05D005516 2.0e-269 932.2 593 79.4
CSS0022050 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 4.5e-269 931.0 604 79.5
vmacro19178 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 1.0e-268 929.9 604 78.5
Lj4g0026438 Lotus japonicus HOM05D004329 ORTHO05D005516 1.3e-268 929.5 603 77.8
PGR083G0006 Punica granatum HOM05D004329 ORTHO05D005516 2.9e-268 928.3 592 78.4
MELO3C015126.2 Cucumis melo HOM05D004329 ORTHO05D005516 3.3e-267 924.9 593 78.8
Dinv23217 Davidia involucrata HOM05D004329 ORTHO05D005516 3.3e-267 924.9 602 78.4
CiPaw.09G139600 Carya illinoinensis HOM05D004329 ORTHO05D005516 5.6e-267 924.1 569 82.1
COL.COLO4_37247 Corchorus olitorius HOM05D004329 ORTHO05D005516 5.6e-267 924.1 623 77.7
Potri.012G106200 Populus trichocarpa HOM05D004329 ORTHO05D005516 5.6e-267 924.1 603 78.3
EL10Ac7g17942 Beta vulgaris HOM05D004329 ORTHO05D005516 7.3e-267 923.7 602 78.2
Sed0023904 Sechium edule HOM05D004329 ORTHO05D005516 9.5e-267 923.3 594 79.1
Sc22g0003470 Simmondsia chinensis HOM05D004329 ORTHO05D005516 1.2e-266 922.9 600 77.7
GSVIVG01008641001 Vitis vinifera HOM05D004329 ORTHO05D005516 1.2e-266 922.9 603 79.9
Sed0013101 Sechium edule HOM05D004329 ORTHO05D005516 6.1e-266 920.6 593 78.4
Eucgr.F03808 Eucalyptus grandis HOM05D004329 ORTHO05D005516 8.0e-266 920.2 602 77.2
VMungo0251G1423 Vigna mungo HOM05D004329 ORTHO05D005516 8.0e-266 920.2 603 77.4
Ca_16811_v3 Cicer arietinum L. HOM05D004329 ORTHO05D005516 3.1e-265 918.3 603 76.9
Psat7g039240 Pisum sativum HOM05D004329 ORTHO05D005516 8.9e-265 916.8 603 76.9
Hma1.2p1_0493F.1_g164990 Hydrangea macrophylla HOM05D004329 ORTHO05D005516 1.2e-264 916.4 601 78.5
Actinidia36840 Actinidia chinensis HOM05D004329 ORTHO05D005516 1.5e-264 916.0 604 77.3
TPR.G12807 Trifolium pratense HOM05D004329 ORTHO05D005516 2.6e-264 915.2 603 76.6
Phvul.002G282000 Phaseolus vulgaris HOM05D004329 ORTHO05D005516 3.4e-264 914.8 603 76.9
Glyma.05G200600 Glycine max HOM05D004329 ORTHO05D005516 4.4e-264 914.4 603 77.3
Medtr8g100110 Medicago truncatula HOM05D004329 ORTHO05D005516 4.4e-264 914.4 603 76.1
Lalb_Chr07g0183781 Lupinus albus HOM05D004329 ORTHO05D005516 9.8e-264 913.3 593 77.1
Nn4g22142 Nelumbo nucifera HOM05D004329 ORTHO05D005516 2.2e-263 912.1 592 77.5
vmacro06162 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 2.2e-263 912.1 604 77.0
Manes.06G126200 Manihot esculenta HOM05D004329 ORTHO05D005516 4.9e-263 911.0 604 77.8
Sabra15G0125900 Salix brachista HOM05D004329 ORTHO05D005516 4.1e-262 907.9 651 73.0
MSTRG.22850 Avicennia marina HOM05D004329 ORTHO05D005516 3.5e-261 904.8 596 77.0
Sopen03g024820 Solanum pennellii HOM05D004329 ORTHO05D005516 1.7e-260 902.5 602 76.6
Aqoxy4G00231 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 3.0e-260 901.7 603 76.3
Thhalv10003854m.g Eutrema salsugineum HOM05D004329 ORTHO05D005516 3.0e-260 901.7 596 76.0
Solyc03g093970.3 Solanum lycopersicum HOM05D004329 ORTHO05D005516 4.3e-259 897.9 602 76.4
Nitab4.5_0007718g0050 Nicotiana tabacum HOM05D004329 ORTHO05D005516 5.6e-259 897.5 603 76.5
THA.LOC104823903 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 5.6e-259 897.5 603 75.3
BolC2t12235H Brassica oleracea HOM05D004329 ORTHO05D005516 1.6e-258 896.0 602 74.9
THA.LOC104819422 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 1.6e-258 896.0 603 74.6
BraA02t09122Z Brassica rapa HOM05D004329 ORTHO05D005516 2.8e-258 895.2 602 75.1
Sp2g25150 Schrenkiella parvula HOM05D004329 ORTHO05D005516 1.8e-257 892.5 601 75.0
Lsat_1_v5_gn_4_84600 Lactuca sativa HOM05D004329 ORTHO05D005516 2.3e-257 892.1 605 76.9
AL8G38730 Arabidopsis lyrata HOM05D004329 ORTHO05D005516 3.1e-257 891.7 600 74.7
BcaC01g02451 Brassica carinata HOM05D004329 ORTHO05D005516 3.1e-257 891.7 601 74.7
C03p65130 Brassica napus HOM05D004329 ORTHO05D005516 3.1e-257 891.7 601 74.7
BolC3t18767H Brassica oleracea HOM05D004329 ORTHO05D005516 3.1e-257 891.7 601 74.7
A06p28670 Brassica napus HOM05D004329 ORTHO05D005516 4.0e-257 891.3 601 74.7
Lj5A87T69 Lonicera japonica HOM05D004329 ORTHO05D005516 4.0e-257 891.3 579 78.8
BraA06t25807Z Brassica rapa HOM05D004329 ORTHO05D005516 8.9e-257 890.2 601 74.5
Solyc02g062810.4 Solanum lycopersicum HOM05D004329 ORTHO05D005516 1.2e-256 889.8 602 76.1
Sopen02g013850 Solanum pennellii HOM05D004329 ORTHO05D005516 1.2e-256 889.8 602 75.7
Aa31LG11G1550 Aethionema arabicum HOM05D004329 ORTHO05D005516 1.5e-256 889.4 601 73.9
CAN.G1210.1 Capsicum annuum HOM05D004329 ORTHO05D005516 2.0e-256 889.0 602 76.1
SGA_v2.0_scaffold74G24730 Striga asiatica HOM05D004329 ORTHO05D005516 2.0e-256 889.0 615 74.6
BcaB02g09609 Brassica carinata HOM05D004329 ORTHO05D005516 2.6e-256 888.6 601 74.5
arahy.Tifrunner.gnm1.ann1.IBL9WM Arachis hypogaea HOM05D004329 ORTHO05D005516 4.4e-256 887.9 597 75.7
Carub.0008s2266 Capsella rubella HOM05D004329 ORTHO05D005516 7.5e-256 887.1 602 74.6
Migut.I00617 Erythranthe guttata HOM05D004329 ORTHO05D005516 1.3e-255 886.3 601 75.7
arahy.Tifrunner.gnm1.ann1.HJ5J7F Arachis hypogaea HOM05D004329 ORTHO05D005516 2.9e-255 885.2 596 75.5
AT5G61970 Arabidopsis thaliana HOM05D004329 ORTHO05D005516 1.4e-254 882.9 600 74.0
Peaxi162Scf00935g00018 Petunia axillaris HOM05D004329 ORTHO05D005516 2.4e-254 882.1 600 75.8
Carub.0005s0295 Capsella rubella HOM05D004329 ORTHO05D005516 7.8e-253 877.1 601 73.9
ECA232G2772 Erigeron canadensis HOM05D004329 ORTHO05D005516 2.3e-252 875.5 593 75.4
Oeu012844.2 Olea europaea HOM05D004329 ORTHO05D005516 3.0e-252 875.2 660 70.2
Sabra12G0078600 Salix brachista HOM05D004329 ORTHO05D005516 3.0e-252 875.2 684 68.7
Dinv13728 Davidia involucrata HOM05D004329 ORTHO05D005516 6.6e-252 874.0 571 78.6
HanXRQChr09g0273891 Helianthus annuus HOM05D004329 ORTHO05D005516 6.6e-252 874.0 603 75.1
Glyma.08G008000 Glycine max HOM05D004329 ORTHO05D005516 2.8e-250 868.6 563 78.0
BcaB07g29807 Brassica carinata HOM05D004329 ORTHO05D005516 2.0e-248 862.4 623 71.4
PSO017G7154 Papaver somniferum HOM05D004329 ORTHO05D005516 1.2e-245 853.2 601 72.7
Actinidia08906 Actinidia chinensis HOM05D000877 ORTHO05D001509 2.1e-245 852.4 553 77.8
PSO478G2811 Papaver somniferum HOM05D004329 ORTHO05D005516 2.7e-245 852.0 601 72.7
ATR1096G004 Amborella trichopoda HOM05D004329 ORTHO05D005516 4.6e-245 851.3 595 71.9
Hund02504 Selenicereus undatus HOM05D004329 ORTHO05D005516 6.2e-242 840.9 549 77.6
Cpa.g.sc13.162 Carica papaya HOM05D004329 ORTHO05D005516 1.7e-239 832.8 595 73.6
AUR62041693 Chenopodium quinoa HOM05D004329 ORTHO05D005516 6.4e-239 830.9 595 72.4
AUR62009528 Chenopodium quinoa HOM05D004329 ORTHO05D005516 3.2e-238 828.6 595 72.3
DCAR_016350 Daucus carota HOM05D004329 ORTHO05D005516 9.3e-238 827.0 601 72.7
SGA_v2.0_scaffold40G15626 Striga asiatica HOM05D004329 ORTHO05D005516 5.3e-233 811.2 612 69.6
SalBow1G7365 Salvia bowleyana HOM05D004329 ORTHO05D005516 9.0e-225 783.9 641 66.5
PSO081G0143 Papaver somniferum HOM05D004329 ORTHO05D005516 1.9e-222 776.2 601 68.1
Manes.14G045200 Manihot esculenta HOM05D004329 ORTHO05D005516 3.5e-221 771.9 480 81.9
unitig_32.g11043 Utricularia gibba HOM05D004329 ORTHO05D005516 2.5e-219 765.8 650 62.0
Zm00001eb327290 Zea mays HOM05D004329 ORTHO05D005516 4.3e-219 765.0 597 65.7
CDE04G3457 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 7.6e-216 754.2 593 65.8
CARHR275760 Cardamine hirsuta HOM05D004329 ORTHO05D005516 4.2e-214 748.4 480 78.1
MBI13_g15007_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 6.0e-213 744.6 504 74.6
SEGI_15405 Sequoiadendron giganteum HOM05D004329 ORTHO05D005516 1.5e-211 740.0 601 62.2
PGSC0003DMG400015501 Solanum tuberosum HOM05D004329 ORTHO05D005516 4.3e-211 738.4 494 75.9
AUR62044173 Chenopodium quinoa HOM05D004329 ORTHO05D005516 2.2e-202 709.5 554 67.7
C02p61780 Brassica napus HOM05D004329 ORTHO05D005516 2.7e-189 666.0 430 77.7
Cc09_g07950 Coffea canephora HOM05D004329 ORTHO05D005516 4.7e-181 638.6 442 74.7
MBI13_g43178_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 2.8e-178 629.4 504 66.3
AagrBONN_evm.TU.Sc2ySwM_228.1186 Anthoceros agrestis HOM05D004329 ORTHO05D005516 6.8e-172 608.2 610 52.5
FAN18G2676 Fragaria x ananassa HOM05D004329 ORTHO05D005516 3.1e-169 599.4 531 65.2
Pp3c15_22190 Physcomitrium patens HOM05D004329 ORTHO05D005516 4.1e-169 599.0 576 53.8
Mapoly0153s0017 Marchantia polymorpha HOM05D004329 ORTHO05D005516 2.7e-168 596.3 600 51.5
Os08g0323000 Oryza sativa ssp. japonica HOM05D004329 ORTHO05D005516 4.3e-158 562.4 435 64.6
Ah.11g046840 Amaranthus hybridus HOM05D004329 ORTHO05D005516 1.3e-151 540.8 336 82.7
A02p41850 Brassica napus HOM05D004329 ORTHO05D005516 2.7e-144 516.5 367 72.2
HPP92_028710 Vanilla planifolia HOM05D004329 ORTHO05D005516 7.1e-137 491.9 418 61.5
CBR_g20988 Chara braunii HOM05D004329 ORTHO05D005516 1.7e-135 487.3 614 44.8
Nitab4.5_0009429g0030 Nicotiana tabacum HOM05D004329 ORTHO05D005516 9.6e-126 454.9 289 82.0
SMO356G0738 Selaginella moellendorffii HOM05D004329 ORTHO05D005516 9.6e-126 454.9 573 43.5
Nitab4.5_0017885g0010 Nicotiana tabacum HOM05D004329 ORTHO05D005516 1.1e-121 441.4 332 68.4
CDE07G0688 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 2.6e-115 420.2 241 85.5
Cc00_g30130 Coffea canephora HOM05D004329 ORTHO05D005516 6.2e-109 399.1 280 73.6
Aqoxy5G01090 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 6.4e-106 389.0 437 50.1
TAR622G0210 Trochodendron aralioides HOM05D004329 ORTHO05D005516 1.9e-89 334.3 317 56.2
CDE07G1247 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 6.1e-88 329.3 274 63.1
MBI13_g13130_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 7.2e-73 279.3 174 82.2
Cre06.g267100 Chlamydomonas reinhardtii HOM05D004329 ORTHO05D005516 2.1e-72 277.7 682 30.9
MCO15G338 Micromonas commoda HOM05D004329 ORTHO05D005516 9.7e-70 268.9 554 35.0
BcaC03g18112 Brassica carinata HOM05D004329 ORTHO05D005516 5.2e-63 246.5 156 78.8
Cc09_g07980 Coffea canephora HOM05D004329 ORTHO05D005516 1.7e-58 231.5 149 79.9
Cc09_g07990 Coffea canephora HOM05D004329 ORTHO05D005516 2.9e-58 230.7 156 78.2
CSS0034501 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 6.8e-47 193.0 149 70.5
CSS0009974 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 9.8e-46 189.1 107 87.9
PRCOL_00003443 Prasinoderma coloniale HOM05D004329 ORTHO05D005516 6.8e-39 166.4 617 26.4
Solyc02g062830.2 Solanum lycopersicum HOM05D004329 ORTHO05D005516 2.1e-32 144.8 96 74.0
AagrBONN_evm.TU.Sc2ySwM_228.1281 Anthoceros agrestis HOM05D004329 ORTHO05D005516 8.9e-31 139.4 120 55.8
AagrBONN_evm.TU.Sc2ySwM_228.1280 Anthoceros agrestis HOM05D004329 ORTHO05D005516 8.3e-29 132.9 186 41.9
C02p61790 Brassica napus HOM05D004329 ORTHO05D005516 1.1e-25 122.5 98 64.3
CARHR275770 Cardamine hirsuta HOM05D004329 ORTHO05D005516 6.2e-24 116.7 99 58.6
Haze_22596 Corylus avellana HOM05D004329 ORTHO05D010424 6.4e-21 106.7 73 68.5
Solyc02g062840.1 Solanum lycopersicum HOM05D004329 ORTHO05D005516 2.4e-20 104.8 66 77.3
Zm00001eb081410 Zea mays HOM05D004902 ORTHO05D006603 3.0e-18 97.8 78 57.7
Lsat_1_v5_gn_5_81961 Lactuca sativa HOM05D004329 ORTHO05D005516 1.5e-17 95.5 49 91.8
Cfa027290 Carpinus fangiana HOM05D004329 ORTHO05D121551 1.9e-17 95.1 636 23.3
Lsat_1_v5_gn_8_114301 Lactuca sativa HOM05D004329 ORTHO05D005516 7.3e-17 93.2 48 91.7
CAN.G865.5 Capsicum annuum HOM05D004329 ORTHO05D005516 1.6e-16 92.0 67 59.7
CSS0048280 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 2.0e-14 85.1 99 48.5
Lsat_1_v5_gn_2_122301 Lactuca sativa HOM05D009063 ORTHO05D011082 3.4e-14 84.3 223 31.4
Zm00001eb202340 Zea mays HOM05D004329 ORTHO05D005516 1.7e-13 82.0 71 52.1
Sopen02g013860 Solanum pennellii HOM05D004329 ORTHO05D026010 2.7e-11 74.7 62 67.7
Hund31053 Selenicereus undatus HOM05D004329 ORTHO05D026010 3.5e-11 74.3 54 75.9
Hund31064 Selenicereus undatus HOM05D004329 ORTHO05D026010 1.0e-10 72.8 54 74.1
Solyc04g048930.1 Solanum lycopersicum HOM05D004329 ORTHO05D026010 4.0e-07 60.8 52 59.6
COL.COLO4_03746 Corchorus olitorius HOM05D004329 ORTHO05D155270 5.8e-06 57.0 29 86.2


User provided reference genes

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