Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0184111 Rosa chinensis HOM05D003829 ORTHO05D004943 0.0e+00 1218.8 611 100.0
FvH4_5g13020 Fragaria vesca HOM05D003829 ORTHO05D004943 0.0e+00 1148.3 611 94.1
FAN08G2534 Fragaria x ananassa HOM05D003829 ORTHO05D004943 0.0e+00 1145.6 611 93.9
FAN18G1085 Fragaria x ananassa HOM05D003829 ORTHO05D004943 0.0e+00 1144.0 611 93.8
FAN13G0156 Fragaria x ananassa HOM05D003829 ORTHO05D004943 0.0e+00 1141.7 611 93.8
Prupe.5G041000 Prunus persica HOM05D003829 ORTHO05D004943 8.6e-292 1006.5 611 81.2
Prupe.5G212200 Prunus persica HOM05D003829 ORTHO05D004943 4.2e-286 987.6 611 79.9
MD06G1208000 Malus domestica HOM05D003829 ORTHO05D004943 2.9e-279 964.9 615 78.0
MD14G1218400 Malus domestica HOM05D003829 ORTHO05D004943 1.9e-278 962.2 613 77.8
PGR119G2172 Punica granatum HOM05D003829 ORTHO05D004943 2.4e-273 945.3 615 75.0
Eucgr.B02012 Eucalyptus grandis HOM05D003829 ORTHO05D004943 9.0e-273 943.3 610 75.9
Sed0025371 Sechium edule HOM05D003829 ORTHO05D004943 2.9e-271 938.3 611 75.1
Ciclev10014690m.g Citrus clementina HOM05D003829 ORTHO05D004943 4.9e-271 937.6 611 75.5
CsaV3_1G003150 Cucumis sativus L. HOM05D003829 ORTHO05D004943 8.4e-271 936.8 611 74.6
Potri.018G070200 Populus trichocarpa HOM05D003829 ORTHO05D004943 1.1e-270 936.4 613 74.4
GSVIVG01008188001 Vitis vinifera HOM05D003829 ORTHO05D004943 1.4e-270 936.0 611 75.1
ClCG06G015260 Citrullus lanatus HOM05D003829 ORTHO05D004943 2.4e-270 935.3 611 75.0
Atru.chr10.875 Acer truncatum HOM05D003829 ORTHO05D004943 1.2e-269 932.9 611 74.8
THA.LOC104820955 Tarenaya hassleriana HOM05D003829 ORTHO05D004943 4.6e-269 931.0 610 75.2
THA.LOC104806554 Tarenaya hassleriana HOM05D003829 ORTHO05D004943 7.9e-269 930.2 610 75.4
Actinidia35063 Actinidia chinensis HOM05D003829 ORTHO05D004943 1.8e-268 929.1 611 74.8
CSS0022273 Camellia sinensis var. sinensis HOM05D003829 ORTHO05D004943 2.5e-267 925.2 611 74.5
SGA_v2.0_scaffold116G32207 Striga asiatica HOM05D003829 ORTHO05D004943 5.6e-267 924.1 611 75.3
Cc00_g04570 Coffea canephora HOM05D003829 ORTHO05D004943 7.4e-267 923.7 611 74.3
Actinidia18960 Actinidia chinensis HOM05D003829 ORTHO05D004943 9.6e-267 923.3 611 74.0
Glyma.17G083700 Glycine max HOM05D003829 ORTHO05D004943 4.8e-266 921.0 617 73.7
Gohir.D12G270700 Gossypium hirsutum HOM05D003829 ORTHO05D004943 8.2e-266 920.2 611 74.3
Glyma.05G016400 Glycine max HOM05D003829 ORTHO05D004943 1.1e-265 919.8 617 73.6
TAR622G1091 Trochodendron aralioides HOM05D003829 ORTHO05D004943 4.0e-265 917.9 626 73.5
Gorai.008G291100 Gossypium raimondii HOM05D003829 ORTHO05D004943 5.3e-265 917.5 611 74.1
Nn6g34733 Nelumbo nucifera HOM05D003829 ORTHO05D004943 5.3e-265 917.5 608 75.2
Hund27361 Selenicereus undatus HOM05D003829 ORTHO05D004943 5.3e-265 917.5 633 71.4
Thecc.03G060100 Theobroma cacao HOM05D003829 ORTHO05D004943 5.3e-265 917.5 611 75.3
VMungo1215G2863 Vigna mungo HOM05D003829 ORTHO05D004943 6.9e-265 917.1 617 73.4
Gohir.A12G270300 Gossypium hirsutum HOM05D003829 ORTHO05D004943 9.0e-265 916.8 611 73.8
Nn3g17616 Nelumbo nucifera HOM05D003829 ORTHO05D004943 9.0e-265 916.8 610 73.6
Hma1.2p1_0744F.1_g211650 Hydrangea macrophylla HOM05D003829 ORTHO05D004943 1.5e-264 916.0 611 73.6
arahy.Tifrunner.gnm1.ann1.03AHKF Arachis hypogaea HOM05D003829 ORTHO05D004943 2.0e-264 915.6 618 73.1
arahy.Tifrunner.gnm1.ann1.WM1R7K Arachis hypogaea HOM05D003829 ORTHO05D004943 2.0e-264 915.6 618 73.0
Manes.06G055300 Manihot esculenta HOM05D003829 ORTHO05D004943 2.0e-264 915.6 612 73.4
Potri.013G068100 Populus trichocarpa HOM05D003829 ORTHO05D004943 2.0e-264 915.6 614 73.3
Phvul.003G180700 Phaseolus vulgaris HOM05D003829 ORTHO05D004943 7.6e-264 913.7 617 72.4
MSTRG.22458 Avicennia marina HOM05D003829 ORTHO05D004943 4.9e-263 911.0 611 74.1
AL2G32240 Arabidopsis lyrata HOM05D003829 ORTHO05D004943 1.1e-262 909.8 611 73.3
SGA_v2.0_scaffold127G34045 Striga asiatica HOM05D003829 ORTHO05D004943 2.5e-262 908.7 611 73.8
EL10Ac6g14132 Beta vulgaris HOM05D003829 ORTHO05D004943 1.2e-261 906.4 638 70.8
Ah.03g138770 Amaranthus hybridus HOM05D003829 ORTHO05D004943 3.5e-261 904.8 578 75.8
HanXRQChr03g0078721 Helianthus annuus HOM05D003829 ORTHO05D004943 3.5e-261 904.8 612 73.5
Sp6g28120 Schrenkiella parvula HOM05D003829 ORTHO05D004943 4.6e-261 904.4 612 72.7
Psat4g043920 Pisum sativum HOM05D003829 ORTHO05D004943 6.0e-261 904.0 617 72.1
Medtr4g112680 Medicago truncatula HOM05D003829 ORTHO05D004943 7.9e-261 903.7 617 72.8
Carub.0002s1941 Capsella rubella HOM05D003829 ORTHO05D004943 5.7e-259 897.5 611 71.8
Lalb_Chr12g0197451 Lupinus albus HOM05D003829 ORTHO05D004943 1.3e-258 896.3 617 71.5
SalBow6G2606 Salvia bowleyana HOM05D003829 ORTHO05D004943 1.3e-258 896.3 611 73.0
AUR62014243 Chenopodium quinoa HOM05D003829 ORTHO05D004943 1.6e-258 896.0 622 71.5
AUR62008644 Chenopodium quinoa HOM05D003829 ORTHO05D004943 2.8e-258 895.2 622 71.7
TWI73G0611 Tripterygium wilfordii HOM05D003829 ORTHO05D004943 3.7e-258 894.8 614 72.6
Lj4g0017423 Lotus japonicus HOM05D003829 ORTHO05D004943 1.8e-257 892.5 617 71.6
Lj4C813G7 Lonicera japonica HOM05D003829 ORTHO05D004943 2.4e-257 892.1 600 73.7
CiPaw.04G139300 Carya illinoinensis HOM05D003829 ORTHO05D004943 6.9e-257 890.6 618 72.2
ECA240G3266 Erigeron canadensis HOM05D003829 ORTHO05D003544 3.4e-256 888.3 612 73.0
HanXRQChr09g0270121 Helianthus annuus HOM05D003829 ORTHO05D004943 1.7e-255 885.9 613 72.8
Sabra13G0059400 Salix brachista HOM05D003829 ORTHO05D004943 2.9e-255 885.2 677 67.2
QL10p021913 Quercus lobata HOM05D003829 ORTHO05D004943 3.2e-254 881.7 617 71.5
ATR0789G018 Amborella trichopoda HOM05D003829 ORTHO05D004943 4.2e-254 881.3 613 71.6
A10p23060 Brassica napus HOM05D003829 ORTHO05D004943 7.2e-254 880.6 612 71.2
BraA10t44375Z Brassica rapa HOM05D003829 ORTHO05D004943 7.2e-254 880.6 612 71.2
C09p61050 Brassica napus HOM05D003829 ORTHO05D004943 9.3e-254 880.2 612 71.4
AT1G72550 Arabidopsis thaliana HOM05D003829 ORTHO05D004943 2.1e-253 879.0 618 70.6
DCAR_011621 Daucus carota HOM05D003829 ORTHO05D004943 3.6e-253 878.2 612 71.6
BolC9t58950H Brassica oleracea HOM05D003829 ORTHO05D004943 7.9e-253 877.1 612 71.1
CARHR065490 Cardamine hirsuta HOM05D003829 ORTHO05D004943 1.0e-252 876.7 623 70.8
Migut.N03353 Erythranthe guttata HOM05D003829 ORTHO05D004943 1.3e-252 876.3 581 74.0
Sc12g0007010 Simmondsia chinensis HOM05D003829 ORTHO05D004943 9.7e-251 870.2 611 70.5
CAN.G282.43 Capsicum annuum HOM05D003829 ORTHO05D004943 3.7e-250 868.2 611 69.9
Sopen01g003830 Solanum pennellii HOM05D003829 ORTHO05D004943 1.4e-249 866.3 611 69.9
Migut.M00517 Erythranthe guttata HOM05D003829 ORTHO05D004943 1.8e-249 865.9 611 70.4
Cpa.g.sc271.5 Carica papaya HOM05D003829 ORTHO05D004943 5.9e-248 860.9 611 72.7
Migut.O00831 Erythranthe guttata HOM05D003829 ORTHO05D004943 5.9e-248 860.9 611 70.2
COL.COLO4_28877 Corchorus olitorius HOM05D003829 ORTHO05D004943 9.4e-246 853.6 643 68.4
CANSAT80G2907 Cannabis sativa HOM05D003829 ORTHO05D004943 2.7e-245 852.0 528 78.2
CDE10G0816 Ceratophyllum demersum HOM05D003829 ORTHO05D004943 1.5e-243 846.3 602 70.1
unitig_0.g846 Utricularia gibba HOM05D003829 ORTHO05D004943 1.5e-243 846.3 610 68.9
Aa31LG11G13610 Aethionema arabicum HOM05D003829 ORTHO05D004943 3.3e-243 845.1 649 67.0
Solyc01g008310.4 Solanum lycopersicum HOM05D003829 ORTHO05D004943 5.3e-241 837.8 588 70.6
Cfa021591 Carpinus fangiana HOM05D003829 ORTHO05D004943 2.6e-240 835.5 597 71.9
unitig_60.g25860 Utricularia gibba HOM05D003829 ORTHO05D004943 5.9e-240 834.3 624 67.3
Thhalv10007156m.g Eutrema salsugineum HOM05D003829 ORTHO05D004943 2.2e-239 832.4 611 68.4
Dinv38617 Davidia involucrata HOM05D003829 ORTHO05D004943 8.5e-239 830.5 590 70.5
vmacro21052 Vaccinium macrocarpon HOM05D003829 ORTHO05D004943 1.4e-238 829.7 745 59.7
Peaxi162Scf00153g00217 Petunia axillaris HOM05D003829 ORTHO05D004943 2.3e-236 822.4 611 67.6
Ca_21737_v3 Cicer arietinum L. HOM05D003829 ORTHO05D004943 3.7e-234 815.1 570 71.4
Nitab4.5_0006274g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 3.7e-234 815.1 611 68.1
BcaC04g18917 Brassica carinata HOM05D003829 ORTHO05D004943 2.5e-230 802.4 612 66.2
Mapoly0013s0023 Marchantia polymorpha HOM05D003829 ORTHO05D004943 4.2e-230 801.6 612 65.8
MELO3C017266.2 Cucumis melo HOM05D003829 ORTHO05D004943 2.1e-229 799.3 535 73.6
Duzib084G0834 Durio zibethinus HOM05D003829 ORTHO05D004943 4.7e-229 798.1 611 67.4
SMO351G0192 Selaginella moellendorffii HOM05D003829 ORTHO05D004943 2.8e-226 788.9 612 64.9
Os05g0558900 Oryza sativa ssp. japonica HOM05D003829 ORTHO05D004943 5.9e-224 781.2 616 64.8
TPR.G23867 Trifolium pratense HOM05D003829 ORTHO05D004943 8.5e-223 777.3 533 71.7
Pp3c22_15340 Physcomitrium patens HOM05D003829 ORTHO05D004943 2.5e-222 775.8 617 63.4
PSO676G0009 Papaver somniferum HOM05D003829 ORTHO05D004943 2.2e-218 762.7 621 63.1
Pp3c19_13120 Physcomitrium patens HOM05D003829 ORTHO05D004943 2.4e-217 759.2 617 62.6
PSO384G2719 Papaver somniferum HOM05D003829 ORTHO05D004943 2.7e-216 755.7 619 63.2
CiPaw.15G121900 Carya illinoinensis HOM05D003829 ORTHO05D004943 5.9e-216 754.6 526 70.9
CDE10G0520 Ceratophyllum demersum HOM05D003829 ORTHO05D004943 1.5e-214 750.0 529 70.5
Aqoxy1G02793 Aquilegia oxysepala HOM05D003829 ORTHO05D004943 2.0e-211 739.6 612 61.6
BcaB08g36877 Brassica carinata HOM05D003829 ORTHO05D004943 4.9e-210 734.9 584 64.6
Zm00001eb267900 Zea mays HOM05D003829 ORTHO05D004943 8.3e-210 734.2 614 63.0
Aqoxy6G02137 Aquilegia oxysepala HOM05D003829 ORTHO05D004943 1.4e-209 733.4 612 60.6
CBR_g49053 Chara braunii HOM05D003829 ORTHO05D004943 7.0e-209 731.1 597 61.1
Medtr5g077610 Medicago truncatula HOM05D003829 ORTHO05D004943 2.9e-207 725.7 617 61.8
COL.COLO4_30269 Corchorus olitorius HOM05D003829 ORTHO05D004943 8.6e-207 724.2 809 51.9
Oeu037756.2 Olea europaea HOM05D003829 ORTHO05D004943 5.8e-195 684.9 504 69.2
Lsat_1_v5_gn_1_11920 Lactuca sativa HOM05D003829 ORTHO05D004943 1.3e-194 683.7 579 61.8
AagrBONN_evm.TU.Sc2ySwM_199.43 Anthoceros agrestis HOM05D003829 ORTHO05D004943 1.9e-193 679.9 531 63.8
Migut.L00155 Erythranthe guttata HOM05D003829 ORTHO05D004943 1.5e-190 670.2 447 72.5
Cre13.g603900 Chlamydomonas reinhardtii HOM05D003829 ORTHO05D004943 2.6e-187 659.4 632 55.1
CiPaw.16G081500 Carya illinoinensis HOM05D003829 ORTHO05D004943 5.8e-179 631.7 438 74.2
MCO09G827 Micromonas commoda HOM05D003829 ORTHO05D004943 1.6e-176 623.6 621 53.8
PSO339G3234 Papaver somniferum HOM05D003829 ORTHO05D004943 2.3e-175 619.8 580 57.2
PRCOL_00001438 Prasinoderma coloniale HOM05D003829 ORTHO05D004943 5.6e-174 615.1 585 52.1
HPP92_013145 Vanilla planifolia HOM05D003829 ORTHO05D004943 2.8e-165 586.3 626 52.1
Atru.chr11.247 Acer truncatum HOM05D003829 ORTHO05D004943 2.1e-160 570.1 503 58.6
Rhsim01G0138800 Rhododendron simsii HOM05D003829 ORTHO05D004943 2.4e-156 556.6 785 44.2
Rhsim09G0091000 Rhododendron simsii HOM05D003829 ORTHO05D004943 1.1e-153 547.7 413 65.4
Hma1.2p1_0340F.1_g130210 Hydrangea macrophylla HOM05D003829 ORTHO05D004943 7.9e-152 541.6 404 68.3
Haze_26625 Corylus avellana HOM05D003829 ORTHO05D004943 1.8e-148 530.4 625 46.4
Haze_18554 Corylus avellana HOM05D003829 ORTHO05D004943 1.0e-146 524.6 381 69.3
Cfa026018 Carpinus fangiana HOM05D003829 ORTHO05D004943 2.8e-141 506.5 614 45.1
Haze_25314 Corylus avellana HOM05D003829 ORTHO05D004943 7.7e-123 445.3 318 71.1
HPP92_013144 Vanilla planifolia HOM05D003829 ORTHO05D004943 5.2e-119 432.6 347 64.3
SEGI_10599 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 4.7e-112 409.5 290 70.3
QL10p029183 Quercus lobata HOM05D003829 ORTHO05D004943 6.7e-111 405.6 260 76.5
AagrBONN_evm.TU.Sc2ySwM_368.2791 Anthoceros agrestis HOM05D003829 ORTHO05D004943 1.0e-106 391.7 422 50.5
HPP92_013183 Vanilla planifolia HOM05D003829 ORTHO05D004943 2.9e-106 390.2 460 47.4
Nitab4.5_0001328g0030 Nicotiana tabacum HOM05D003829 ORTHO05D004943 1.0e-103 381.7 610 39.3
SEGI_36904 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 3.1e-100 370.2 293 64.8
HPP92_012745 Vanilla planifolia HOM05D003829 ORTHO05D004943 1.0e-98 365.2 351 57.3
HPP92_013146 Vanilla planifolia HOM05D003829 ORTHO05D004943 5.0e-90 336.3 310 58.1
Nitab4.5_0000069g0100 Nicotiana tabacum HOM05D003829 ORTHO05D004943 7.3e-81 305.8 261 59.0
HPP92_013143 Vanilla planifolia HOM05D003829 ORTHO05D004943 1.2e-78 298.5 265 56.6
SEGI_15169 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 2.4e-76 290.8 203 71.4
Nitab4.5_0023629g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 3.5e-75 287.0 173 82.1
Nitab4.5_0021995g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 3.1e-71 273.9 190 73.7
SEGI_31614 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 2.4e-68 264.2 189 69.8
Haze_18553 Corylus avellana HOM05D003829 ORTHO05D004943 9.2e-68 262.3 167 78.4
Haze_25313 Corylus avellana HOM05D003829 ORTHO05D004943 9.2e-68 262.3 170 77.1
C02p08100 Brassica napus HOM05D003829 ORTHO05D004943 1.2e-67 261.9 203 62.6
Nitab4.5_0023875g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 2.7e-67 260.8 189 68.8
Migut.L00154 Erythranthe guttata HOM05D003829 ORTHO05D004943 1.2e-62 245.4 166 74.1
BcaC03g18463 Brassica carinata HOM05D003829 ORTHO05D004943 2.0e-62 244.6 204 60.8
BolC2t06732H Brassica oleracea HOM05D003829 ORTHO05D004943 3.8e-61 240.4 204 59.8
SEGI_27435 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 3.1e-55 220.7 142 69.7
Sp5g27630 Schrenkiella parvula HOM05D003829 ORTHO05D004943 4.0e-55 220.3 257 47.9
Eucgr.E02529 Eucalyptus grandis HOM05D003829 ORTHO05D004943 5.8e-54 216.5 131 79.4
Duzib205G0197 Durio zibethinus HOM05D003829 ORTHO05D004943 1.7e-53 214.9 471 33.3
Eucgr.B00970 Eucalyptus grandis HOM05D003829 ORTHO05D004943 3.5e-51 207.2 120 81.7
Oeu029991.1 Olea europaea HOM05D003829 ORTHO05D004943 1.3e-48 198.7 116 78.4
BraA03t10079Z Brassica rapa HOM05D000168 ORTHO05D000811 5.3e-47 193.4 120 70.8
A03p07510 Brassica napus HOM05D003829 ORTHO05D004943 9.0e-47 192.6 120 71.7
SEGI_39885 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 4.2e-44 183.7 120 70.0
C03p08720 Brassica napus HOM05D003829 ORTHO05D004943 3.5e-43 180.6 120 69.2
BolC3t13370H Brassica oleracea HOM05D000168 ORTHO05D000811 7.9e-43 179.5 120 68.3
HPP92_013186 Vanilla planifolia HOM05D003829 ORTHO05D004943 8.1e-40 169.5 187 50.8
Glyma.05G172902 Glycine max HOM05D003829 ORTHO05D004943 9.0e-39 166.0 145 60.0
Rhsim09G0090700 Rhododendron simsii HOM05D000822 ORTHO05D002021 3.0e-34 151.0 178 53.9
SEGI_23908 Sequoiadendron giganteum HOM05D003829 ORTHO05D004052 3.0e-34 151.0 229 43.7
HanXRQChr05g0129701 Helianthus annuus HOM05D003829 ORTHO05D044979 3.7e-32 144.1 85 76.5
Glyma.10G113400 Glycine max HOM05D003829 ORTHO05D028379 9.3e-28 129.4 174 47.1
MELO3C000039.2 Cucumis melo HOM05D003829 ORTHO05D004943 1.4e-23 115.5 75 68.0
Hma1.2p1_0340F.1_g130220 Hydrangea macrophylla HOM05D003829 ORTHO05D004943 4.1e-23 114.0 99 59.6
CARHR202060 Cardamine hirsuta HOM05D003829 ORTHO05D116213 2.0e-22 111.7 68 75.0
TPR.G25992 Trifolium pratense HOM05D003829 ORTHO05D015515 3.4e-22 110.9 84 72.6
MELO3C029751.2 Cucumis melo HOM05D003829 ORTHO05D044979 8.5e-21 106.3 60 76.7
HPP92_012679 Vanilla planifolia HOM05D000282 ORTHO05D004791 6.1e-19 100.1 135 41.5
Lsat_1_v5_gn_3_100941 Lactuca sativa HOM05D002028 ORTHO05D022527 4.8e-16 90.5 70 57.1
Nitab4.5_0000138g0100 Nicotiana tabacum HOM05D003829 ORTHO05D284283 1.1e-12 79.3 104 42.3
Haze_25315 Corylus avellana HOM05D003829 ORTHO05D004943 4.2e-12 77.4 60 61.7
BraA03t15147Z Brassica rapa HOM05D040596 ORTHO05D028154 7.4e-09 66.6 47 72.3
BolC1t02481H Brassica oleracea HOM05D003829 ORTHO05D015515 2.2e-08 65.1 46 76.1
A03p61070 Brassica napus HOM05D003829 ORTHO05D028154 2.8e-08 64.7 46 71.7
TAR374G1547 Trochodendron aralioides HOM05D003829 ORTHO05D004943 2.8e-08 64.7 32 84.4


User provided reference genes

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