Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0183361 Rosa chinensis HOM05D005362 ORTHO05D006895 3.2e-211 738.4 439 100.0
FvH4_5g13580 Fragaria vesca HOM05D005362 ORTHO05D006895 8.7e-161 570.9 439 77.0
FAN18G3292 Fragaria x ananassa HOM05D005362 ORTHO05D006895 1.9e-160 569.7 439 76.1
FAN13G0622 Fragaria x ananassa HOM05D005362 ORTHO05D006895 3.4e-157 558.9 440 75.9
FAN08G0684 Fragaria x ananassa HOM05D005362 ORTHO05D006895 3.3e-107 392.9 280 73.9
Prupe.5G207600 Prunus persica HOM05D005362 ORTHO05D006895 1.2e-82 311.2 540 41.1
FAN18G1237 Fragaria x ananassa HOM05D005362 ORTHO05D006895 3.9e-76 289.7 533 39.6
FvH4_5g29994 Fragaria vesca HOM05D005362 ORTHO05D006895 2.5e-75 287.0 533 39.6
FAN13G2767 Fragaria x ananassa HOM05D005362 ORTHO05D006895 1.6e-74 284.3 534 39.5
RcHm_v2.0_Chr7g0224161 Rosa chinensis HOM05D005362 ORTHO05D006895 4.7e-74 282.7 534 39.9
FAN08G0864 Fragaria x ananassa HOM05D005362 ORTHO05D006895 8.1e-74 282.0 534 39.0
MD14G1214300 Malus domestica HOM05D005362 ORTHO05D006895 6.6e-68 262.3 530 37.7
Glyma.10G162500 Glycine max HOM05D005362 ORTHO05D006895 7.6e-64 248.8 525 35.8
Lj1g0020401 Lotus japonicus HOM05D005362 ORTHO05D006895 5.4e-62 242.7 526 37.3
Lalb_Chr07g0178371 Lupinus albus HOM05D005362 ORTHO05D006895 5.4e-62 242.7 533 35.3
Actinidia35047 Actinidia chinensis HOM05D005362 ORTHO05D006895 2.1e-61 240.7 538 35.9
Lj2g0009795 Lotus japonicus HOM05D005362 ORTHO05D006895 2.1e-61 240.7 526 36.7
Glyma.20G225100 Glycine max HOM05D005362 ORTHO05D006895 2.3e-60 237.3 524 35.3
Thecc.03G104700 Theobroma cacao HOM05D005362 ORTHO05D006895 3.0e-60 236.9 520 34.6
TAR371G1139 Trochodendron aralioides HOM05D005362 ORTHO05D006895 8.7e-60 235.3 535 34.6
Dinv17441 Davidia involucrata HOM05D005362 ORTHO05D006895 1.9e-59 234.2 510 35.7
Gohir.D12G186500 Gossypium hirsutum HOM05D005362 ORTHO05D006895 2.5e-59 233.8 516 34.5
CiPaw.11G055600 Carya illinoinensis HOM05D005362 ORTHO05D006895 7.3e-59 232.3 511 34.6
GSVIVG01008125001 Vitis vinifera HOM05D005362 ORTHO05D006895 7.3e-59 232.3 536 35.6
Gohir.A12G183600 Gossypium hirsutum HOM05D005362 ORTHO05D006895 1.6e-58 231.1 516 34.3
Gorai.008G199900 Gossypium raimondii HOM05D005362 ORTHO05D006895 2.8e-58 230.3 516 34.1
Lj5P134T43 Lonicera japonica HOM05D005362 ORTHO05D006895 4.8e-58 229.6 518 34.9
Medtr8g094650 Medicago truncatula HOM05D005362 ORTHO05D006895 4.0e-57 226.5 524 34.2
MD06G1203500 Malus domestica HOM05D005362 ORTHO05D006895 6.9e-57 225.7 416 39.4
Cfa014169 Carpinus fangiana HOM05D005362 ORTHO05D006895 1.5e-56 224.6 458 34.9
COL.COLO4_24316 Corchorus olitorius HOM05D005362 ORTHO05D006895 4.5e-56 223.0 518 33.6
Haze_22893 Corylus avellana HOM05D005362 ORTHO05D006895 4.5e-56 223.0 456 34.9
Phvul.007G187600 Phaseolus vulgaris HOM05D005362 ORTHO05D006895 9.9e-56 221.9 525 33.5
CSS0049665 Camellia sinensis var. sinensis HOM05D005362 ORTHO05D006895 1.3e-55 221.5 472 34.3
CSS0010906 Camellia sinensis var. sinensis HOM05D005362 ORTHO05D006895 1.7e-55 221.1 472 34.3
Nitab4.5_0003441g0070 Nicotiana tabacum HOM05D005362 ORTHO05D006895 2.2e-55 220.7 535 32.5
FAN06G4934 Fragaria x ananassa HOM05D005362 ORTHO05D006895 2.9e-55 220.3 399 39.6
Rhsim12G0149700 Rhododendron simsii HOM05D005362 ORTHO05D006895 3.8e-55 219.9 524 33.8
Duzib205G1468 Durio zibethinus HOM05D005362 ORTHO05D006895 6.4e-55 219.2 519 33.1
Nitab4.5_0000939g0040 Nicotiana tabacum HOM05D005362 ORTHO05D006895 2.7e-53 213.8 531 32.8
Rhsim12G0149500 Rhododendron simsii HOM05D005362 ORTHO05D006895 3.5e-53 213.4 521 33.4
Sabra17G0110200 Salix brachista HOM05D005362 ORTHO05D006895 4.6e-53 213.0 525 33.5
Ca_17613_v3 Cicer arietinum L. HOM05D005362 ORTHO05D006895 6.0e-53 212.6 529 33.5
Psat7g043680 Pisum sativum HOM05D005362 ORTHO05D006895 6.0e-53 212.6 500 33.4
Manes.06G082600 Manihot esculenta HOM05D005362 ORTHO05D006895 1.0e-52 211.8 523 32.1
Cc11_g04710 Coffea canephora HOM05D005362 ORTHO05D006895 1.3e-52 211.5 549 33.3
TWI15G0078 Tripterygium wilfordii HOM05D005362 ORTHO05D006895 1.8e-52 211.1 527 32.1
TWI81G0474 Tripterygium wilfordii HOM05D005362 ORTHO05D006895 1.8e-52 211.1 520 33.5
Aqoxy3G03650 Aquilegia oxysepala HOM05D005362 ORTHO05D006895 3.9e-52 209.9 530 31.3
Potri.017G133400 Populus trichocarpa HOM05D005362 ORTHO05D006895 8.7e-52 208.8 529 31.9
Oeu052452.1 Olea europaea HOM05D005362 ORTHO05D006895 1.3e-50 204.9 540 31.3
PGSC0003DMG400024629 Solanum tuberosum HOM05D005362 ORTHO05D006895 6.2e-50 202.6 530 31.7
QL07p000780 Quercus lobata HOM05D005362 ORTHO05D006895 1.1e-49 201.8 491 35.8
Sp2g24260 Schrenkiella parvula HOM05D005362 ORTHO05D006895 1.4e-49 201.4 527 32.3
vmacro11106 Vaccinium macrocarpon HOM05D005362 ORTHO05D006895 4.0e-49 199.9 396 37.9
VMungo0720G1218 Vigna mungo HOM05D005362 ORTHO05D006895 3.4e-48 196.8 513 32.7
Solyc03g114920.1 Solanum lycopersicum HOM05D005362 ORTHO05D006895 4.5e-48 196.4 524 31.7
Hma1.2p1_0384F.1_g140800 Hydrangea macrophylla HOM05D005362 ORTHO05D006895 5.8e-48 196.1 533 31.5
Peaxi162Scf00201g00422 Petunia axillaris HOM05D005362 ORTHO05D006895 2.2e-47 194.1 521 30.9
Atru.chr9.504 Acer truncatum HOM05D005362 ORTHO05D006895 6.5e-47 192.6 366 38.0
CsaV3_1G003420 Cucumis sativus L. HOM05D005362 ORTHO05D006895 6.5e-47 192.6 530 32.1
MSTRG.11331 Avicennia marina HOM05D005362 ORTHO05D006895 1.4e-46 191.4 539 31.0
MELO3C017241.2 Cucumis melo HOM05D005362 ORTHO05D006895 1.9e-46 191.0 529 30.4
HanXRQChr05g0154331 Helianthus annuus HOM05D005362 ORTHO05D006895 2.5e-46 190.7 527 30.4
Hund02565 Selenicereus undatus HOM05D005362 ORTHO05D006895 4.2e-46 189.9 511 31.1
AT5G60960 Arabidopsis thaliana HOM05D005362 ORTHO05D006895 9.3e-46 188.7 524 30.2
Thhalv10004006m.g Eutrema salsugineum HOM05D005362 ORTHO05D006895 1.2e-45 188.3 526 31.7
AL8G37580 Arabidopsis lyrata HOM05D005362 ORTHO05D006895 3.5e-45 186.8 525 30.3
vmacro16484 Vaccinium macrocarpon HOM05D005362 ORTHO05D006895 1.0e-44 185.3 381 35.7
Carub.0008s2165 Capsella rubella HOM05D005362 ORTHO05D006895 1.3e-44 184.9 525 30.1
Aa31LG11G2340 Aethionema arabicum HOM05D005362 ORTHO05D006895 1.8e-44 184.5 527 30.7
AUR62029951 Chenopodium quinoa HOM05D005362 ORTHO05D006895 2.3e-44 184.1 526 30.4
TPR.G37431 Trifolium pratense HOM05D005362 ORTHO05D006895 5.1e-44 183.0 530 31.1
PGR044G2646 Punica granatum HOM05D005362 ORTHO05D006895 8.7e-44 182.2 281 42.3
Migut.B00504 Erythranthe guttata HOM05D005362 ORTHO05D006895 1.9e-43 181.0 452 31.2
CARHR274640 Cardamine hirsuta HOM05D005362 ORTHO05D006895 1.3e-42 178.3 523 29.6
Sed0019900 Sechium edule HOM05D005362 ORTHO05D006895 2.1e-42 177.6 537 29.6
THA.LOC104804616 Tarenaya hassleriana HOM05D005362 ORTHO05D006895 4.8e-42 176.4 522 30.1
Ciclev10019809m.g Citrus clementina HOM05D005362 ORTHO05D006895 6.2e-42 176.0 350 36.9
CAN.G1228.5 Capsicum annuum HOM05D005362 ORTHO05D006895 1.8e-41 174.5 521 29.4
BcaC06g33209 Brassica carinata HOM05D005362 ORTHO05D006895 6.9e-41 172.6 516 30.2
ClCG06G015530 Citrullus lanatus HOM05D005362 ORTHO05D006895 9.0e-41 172.2 529 29.7
Cpa.g.sc67.22 Carica papaya HOM05D005362 ORTHO05D006895 2.6e-40 170.6 515 30.9
Sc10g0009660 Simmondsia chinensis HOM05D005362 ORTHO05D006895 1.0e-39 168.7 571 28.2
Sopen03g034000 Solanum pennellii HOM05D005362 ORTHO05D006895 1.7e-39 167.9 530 29.2
EL10Ac5g12946 Beta vulgaris HOM05D005362 ORTHO05D006895 6.5e-39 166.0 406 35.5
SGA_v2.0_scaffold28G11735 Striga asiatica HOM05D005362 ORTHO05D006895 1.9e-38 164.5 540 28.3
vmacro08819 Vaccinium macrocarpon HOM05D005362 ORTHO05D006895 7.9e-37 159.1 373 31.6
PSO478G3079 Papaver somniferum HOM05D005362 ORTHO05D006895 1.8e-36 157.9 457 28.4
MBI06_g05054_MAGBIO Magnolia biondii HOM05D005362 ORTHO05D006895 3.0e-36 157.1 500 28.0
PSO170G2279 Papaver somniferum HOM05D005362 ORTHO05D006895 1.1e-35 155.2 541 28.5
PSO017G2639 Papaver somniferum HOM05D005362 ORTHO05D006895 1.5e-35 154.8 458 27.5
unitig_26.g9670 Utricularia gibba HOM05D005362 ORTHO05D006895 9.7e-35 152.1 486 28.2
Nn3g17489 Nelumbo nucifera HOM05D005362 ORTHO05D006895 1.3e-34 151.8 292 38.0
SHI17437 Sapria himalayana HOM05D005362 ORTHO05D006895 1.6e-34 151.4 468 27.6
FvH4_7g15150 Fragaria vesca HOM05D005362 ORTHO05D006895 4.8e-34 149.8 322 38.2
Lsat_1_v5_gn_5_23641 Lactuca sativa HOM05D005362 ORTHO05D006895 4.8e-34 149.8 493 28.4
AUR62033752 Chenopodium quinoa HOM05D005362 ORTHO05D006895 1.4e-33 148.3 414 28.3
Actinidia18977 Actinidia chinensis HOM05D005362 ORTHO05D006895 5.3e-33 146.4 247 41.3
CDE10G0094 Ceratophyllum demersum HOM05D005362 ORTHO05D006895 6.9e-33 146.0 338 30.5
Ah.11g048060 Amaranthus hybridus HOM05D005362 ORTHO05D006895 9.0e-33 145.6 302 34.4
Nitab4.5_0010968g0030 Nicotiana tabacum HOM05D005362 ORTHO05D006895 3.2e-30 137.1 456 29.8
Eucgr.K02538 Eucalyptus grandis HOM05D005362 ORTHO05D006895 3.9e-28 130.2 533 36.8
ECA246G1962 Erigeron canadensis HOM05D005362 ORTHO05D006895 4.1e-25 120.2 512 25.2
unitig_749.g13428 Utricularia gibba HOM05D005362 ORTHO05D006895 1.5e-24 118.2 204 36.3
DCAR_022335 Daucus carota HOM05D005362 ORTHO05D006895 1.0e-23 115.5 300 31.7
FAN03G3293 Fragaria x ananassa HOM05D005362 ORTHO05D006895 5.0e-23 113.2 157 51.6
HPP92_008265 Vanilla planifolia HOM05D005362 ORTHO05D006895 3.0e-20 104.0 476 25.2
HPP92_008261 Vanilla planifolia HOM05D005362 ORTHO05D006895 4.8e-18 96.7 226 31.0
Os07g0603900 Oryza sativa ssp. japonica HOM05D005362 ORTHO05D006895 6.3e-18 96.3 460 24.1
PSO017G2138 Papaver somniferum HOM05D005362 ORTHO05D006895 8.2e-18 95.9 209 32.1
Zm00001eb108830 Zea mays HOM05D005362 ORTHO05D006895 1.1e-17 95.5 470 24.9
SHI19627 Sapria himalayana HOM05D005362 ORTHO05D006895 1.4e-17 95.1 321 25.2
ATR0618G438 Amborella trichopoda HOM05D005362 ORTHO05D006895 3.5e-16 90.5 191 34.6
TPR.G713 Trifolium pratense HOM05D005362 ORTHO05D006895 5.0e-15 86.7 99 47.5
Nitab4.5_0012631g0030 Nicotiana tabacum HOM05D005362 ORTHO05D006895 5.3e-09 66.6 270 24.8
QL02p015096 Quercus lobata HOM05D006218 ORTHO05D007338 3.5e-08 63.9 206 23.3
HanXRQChr02g0043781 Helianthus annuus HOM05D007383 ORTHO05D009254 7.7e-08 62.8 209 24.9
HPP92_008260 Vanilla planifolia HOM05D005362 ORTHO05D006895 1.3e-07 62.0 183 29.0
PSO339G5577 Papaver somniferum HOM05D006596 ORTHO05D008497 3.8e-07 60.5 228 26.8
MD14G1187700 Malus domestica HOM05D007383 ORTHO05D009254 5.0e-07 60.1 274 24.8
PSO384G2212 Papaver somniferum HOM05D006596 ORTHO05D008497 5.0e-07 60.1 228 26.8
Psat1g150760 Pisum sativum HOM05D000001 ORTHO05D000003 1.1e-06 58.9 71 39.4
HPP92_008264 Vanilla planifolia HOM05D005362 ORTHO05D006895 1.1e-06 58.9 176 27.3
Cpa.g.sc30.94 Carica papaya HOM05D000001 ORTHO05D000003 1.5e-06 58.5 79 38.0
HanXRQChr14g0455831 Helianthus annuus HOM05D007383 ORTHO05D009254 1.5e-06 58.5 281 23.8
Medtr2g035620 Medicago truncatula HOM05D000001 ORTHO05D000003 1.9e-06 58.2 71 40.8
SGA_v2.0_scaffold165G38282 Striga asiatica HOM05D000424 ORTHO05D000355 1.9e-06 58.2 216 24.1
SGA_v2.0_scaffold79G25581 Striga asiatica HOM05D000424 ORTHO05D000355 2.5e-06 57.8 219 23.7
TWI53G1953 Tripterygium wilfordii HOM05D000424 ORTHO05D000355 3.2e-06 57.4 220 23.6
ATR0697G239 Amborella trichopoda HOM05D006596 ORTHO05D008497 5.5e-06 56.6 96 32.3
Psat1g150640 Pisum sativum HOM05D000001 ORTHO05D010983 5.5e-06 56.6 71 38.0
TPR.G26575 Trifolium pratense HOM05D000001 ORTHO05D000003 7.2e-06 56.2 71 39.4
Ciclev10007125m.g Citrus clementina HOM05D024618 ORTHO05D000090 9.4e-06 55.8 97 32.0
Cc03_g04090 Coffea canephora HOM05D000424 ORTHO05D000355 9.4e-06 55.8 213 24.4


User provided reference genes

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