Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0178541 Rosa chinensis HOM05D006707 ORTHO05D008243 1.1e-218 763.8 694 100.0
FvH4_5g17250 Fragaria vesca HOM05D006707 ORTHO05D008243 4.4e-175 619.0 694 88.0
FAN18G2052 Fragaria x ananassa HOM05D006707 ORTHO05D008243 4.4e-175 619.0 694 88.0
FAN08G3326 Fragaria x ananassa HOM05D006707 ORTHO05D008243 2.6e-167 593.2 694 87.0
MD06G1231100 Malus domestica HOM05D006707 ORTHO05D008243 3.9e-147 526.2 416 74.0
CARHR093330 Cardamine hirsuta HOM05D006707 ORTHO05D008243 8.8e-99 365.5 367 66.2
Prupe.5G232400 Prunus persica HOM05D006707 ORTHO05D008243 1.5e-98 364.8 312 75.6
THA.LOC104820351 Tarenaya hassleriana HOM05D006707 ORTHO05D008243 1.7e-97 361.3 381 63.8
HPP92_007817 Vanilla planifolia HOM05D006707 ORTHO05D008243 1.3e-94 351.7 367 53.7
Peaxi162Scf00683g00048 Petunia axillaris HOM05D006707 ORTHO05D008243 8.8e-91 339.0 399 57.1
Eucgr.K02270 Eucalyptus grandis HOM05D006707 ORTHO05D008243 2.0e-90 337.8 338 66.0
GSVIVG01016661001 Vitis vinifera HOM05D006707 ORTHO05D008243 4.4e-90 336.7 344 63.4
AT3G18020 Arabidopsis thaliana HOM05D006707 ORTHO05D008243 1.0e-83 315.5 329 66.0
Lj5P156T67 Lonicera japonica HOM05D006707 ORTHO05D008243 4.0e-83 313.5 370 59.2
CAN.G1129.54 Capsicum annuum HOM05D006707 ORTHO05D008243 1.1e-80 305.4 373 56.6
Nitab4.5_0003968g0010 Nicotiana tabacum HOM05D006707 ORTHO05D008243 1.1e-80 305.4 344 59.6
Solyc03g118790.3 Solanum lycopersicum HOM05D006707 ORTHO05D008243 1.8e-80 304.7 404 53.7
Sopen03g037740 Solanum pennellii HOM05D006707 ORTHO05D008243 2.4e-80 304.3 319 62.4
PGSC0003DMG400005747 Solanum tuberosum HOM05D006707 ORTHO05D008243 3.1e-80 303.9 358 57.5
BraA05t22012Z Brassica rapa HOM05D006707 ORTHO05D008243 1.6e-79 301.6 362 61.0
BcaC05g28725 Brassica carinata HOM05D006707 ORTHO05D008243 4.5e-79 300.1 351 60.7
BolC5t33562H Brassica oleracea HOM05D006707 ORTHO05D008243 4.5e-79 300.1 351 60.7
A05p31810 Brassica napus HOM05D006707 ORTHO05D008243 7.7e-79 299.3 363 60.1
BcaB06g25867 Brassica carinata HOM05D006707 ORTHO05D008243 2.3e-78 297.7 326 64.7
TAR622G1063 Trochodendron aralioides HOM05D006707 ORTHO05D008243 1.1e-77 295.4 437 51.7
Sp3g16130 Schrenkiella parvula HOM05D006707 ORTHO05D008243 7.2e-77 292.7 320 64.7
Hund22248 Selenicereus undatus HOM05D006707 ORTHO05D008243 4.7e-76 290.0 389 56.6
C05p48280 Brassica napus HOM05D006707 ORTHO05D008243 2.6e-74 284.3 349 59.6
Haze_21123 Corylus avellana HOM05D006707 ORTHO05D008243 4.4e-74 283.5 319 66.1
Ca_07699_v3 Cicer arietinum L. HOM05D006707 ORTHO05D000099 8.3e-73 279.3 324 59.6
Dinv07298 Davidia involucrata HOM05D006707 ORTHO05D008243 8.3e-73 279.3 309 64.7
Cfa019000 Carpinus fangiana HOM05D006707 ORTHO05D008243 1.1e-72 278.9 320 63.8
CiPaw.15G142400 Carya illinoinensis HOM05D006707 ORTHO05D008243 7.0e-72 276.2 315 64.8
FAN13G2143 Fragaria x ananassa HOM05D006707 ORTHO05D008243 5.9e-71 273.1 139 92.1
Manes.06G007500 Manihot esculenta HOM05D006707 ORTHO05D008243 5.9e-71 273.1 309 61.8
Thhalv10020183m.g Eutrema salsugineum HOM05D006707 ORTHO05D008243 5.0e-70 270.0 313 61.7
Dinv27614 Davidia involucrata HOM05D006707 ORTHO05D008243 1.1e-69 268.9 288 66.3
QL11p014448 Quercus lobata HOM05D006707 ORTHO05D008243 1.5e-69 268.5 319 56.4
Nn4g24204 Nelumbo nucifera HOM05D006707 ORTHO05D008243 4.3e-69 266.9 274 66.1
Sed0000825 Sechium edule HOM05D006707 ORTHO05D008243 7.3e-69 266.2 343 56.6
QL11p013929 Quercus lobata HOM05D006707 ORTHO05D008243 1.6e-68 265.0 322 56.2
AL3G31170 Arabidopsis lyrata HOM05D006707 ORTHO05D008243 4.7e-68 263.5 294 64.3
Actinidia25143 Actinidia chinensis HOM05D006707 ORTHO05D008243 6.8e-67 259.6 310 59.7
TWI81G0630 Tripterygium wilfordii HOM05D006707 ORTHO05D008243 6.8e-67 259.6 302 62.9
COL.COLO4_35387 Corchorus olitorius HOM05D006707 ORTHO05D008243 2.6e-66 257.7 309 58.9
Carub.0003s1773 Capsella rubella HOM05D006707 ORTHO05D008243 1.3e-65 255.4 329 58.4
RhsimUnG0239000 Rhododendron simsii HOM05D006707 ORTHO05D008243 1.3e-65 255.4 302 60.6
Sabra15G0069900 Salix brachista HOM05D006707 ORTHO05D008243 8.3e-65 252.7 309 59.9
Potri.015G039300 Populus trichocarpa HOM05D006707 ORTHO05D008243 1.1e-64 252.3 310 60.0
Sabra15G0070700 Salix brachista HOM05D006707 ORTHO05D008243 1.4e-64 251.9 306 59.2
Sabra15G0057600 Salix brachista HOM05D006707 ORTHO05D008243 2.4e-64 251.1 309 58.9
EL10Ac3g06722 Beta vulgaris HOM05D006707 ORTHO05D008243 3.5e-63 247.3 267 63.7
RhsimUnG0220600 Rhododendron simsii HOM05D006707 ORTHO05D008243 4.6e-63 246.9 262 65.3
Thecc.03G054200 Theobroma cacao HOM05D006707 ORTHO05D008243 4.6e-63 246.9 309 55.3
Medtr7g070420 Medicago truncatula HOM05D006707 ORTHO05D008243 6.0e-63 246.5 331 54.4
Duzib205G0649 Durio zibethinus HOM05D006707 ORTHO05D008243 1.3e-62 245.4 310 58.1
ClCG06G014360 Citrullus lanatus HOM05D006707 ORTHO05D008243 3.0e-62 244.2 313 58.8
Sc10g0004790 Simmondsia chinensis HOM05D006707 ORTHO05D008243 6.6e-62 243.0 318 55.7
Rhsim03G0042300 Rhododendron simsii HOM05D006707 ORTHO05D008243 1.5e-61 241.9 290 60.0
Sabra15G0038500 Salix brachista HOM05D006707 ORTHO05D008243 1.9e-61 241.5 254 65.0
ATR0564G450 Amborella trichopoda HOM05D006707 ORTHO05D008243 3.3e-61 240.7 386 52.1
CsaV3_1G004300 Cucumis sativus L. HOM05D006707 ORTHO05D008243 9.5e-61 239.2 308 58.4
AUR62035893 Chenopodium quinoa HOM05D006707 ORTHO05D008243 2.1e-60 238.0 281 60.9
Aqoxy3G00090 Aquilegia oxysepala HOM05D006707 ORTHO05D008243 2.8e-60 237.7 409 49.6
Psat3g124000 Pisum sativum HOM05D006707 ORTHO05D008243 2.8e-60 237.7 324 54.3
SalBow6G7169 Salvia bowleyana HOM05D006707 ORTHO05D008243 6.2e-60 236.5 276 58.7
AUR62035349 Chenopodium quinoa HOM05D006707 ORTHO05D008243 1.1e-59 235.7 279 61.3
MSTRG.16972 Avicennia marina HOM05D006707 ORTHO05D008243 5.2e-59 233.4 270 61.1
Oeu010709.1 Olea europaea HOM05D006707 ORTHO05D008243 5.2e-59 233.4 319 56.1
Ah.04g153500 Amaranthus hybridus HOM05D006707 ORTHO05D008243 1.2e-58 232.3 267 63.7
arahy.Tifrunner.gnm1.ann1.U18B68 Arachis hypogaea HOM05D000449 ORTHO05D008243 2.0e-58 231.5 325 54.8
PSO478G5041 Papaver somniferum HOM05D006707 ORTHO05D008243 1.3e-57 228.8 309 57.9
Migut.I00309 Erythranthe guttata HOM05D006707 ORTHO05D008243 1.4e-56 225.3 290 56.6
Nitab4.5_0001456g0170 Nicotiana tabacum HOM05D006707 ORTHO05D008243 1.9e-56 224.9 317 54.3
Lj5A157G52 Lonicera japonica HOM05D006707 ORTHO05D008243 2.4e-56 224.6 249 64.3
Cc04_g06350 Coffea canephora HOM05D006707 ORTHO05D008243 3.2e-56 224.2 313 58.1
Aa31LG8G4870 Aethionema arabicum HOM05D006707 ORTHO05D008243 2.7e-55 221.1 277 61.7
DCAR_014733 Daucus carota HOM05D006707 ORTHO05D008243 1.0e-54 219.2 253 62.5
CDE07G1516 Ceratophyllum demersum HOM05D006707 ORTHO05D008243 1.9e-53 214.9 368 48.4
arahy.Tifrunner.gnm1.ann1.72MQAV Arachis hypogaea HOM05D000449 ORTHO05D008243 1.2e-52 212.2 325 52.6
vmacro07812 Vaccinium macrocarpon HOM05D006707 ORTHO05D008243 1.2e-52 212.2 353 37.4
CANSAT11G1044 Cannabis sativa HOM05D006707 ORTHO05D008243 6.2e-52 209.9 228 70.2
arahy.Tifrunner.gnm1.ann1.09GK0V Arachis hypogaea HOM05D004415 ORTHO05D005198 8.1e-52 209.5 325 52.3
Cpa.g.sc3.405 Carica papaya HOM05D006707 ORTHO05D008243 1.7e-49 201.8 237 62.9
Lsat_1_v5_gn_6_99620 Lactuca sativa HOM05D006707 ORTHO05D008243 5.4e-48 196.8 287 55.4
Os07g0674300 Oryza sativa ssp. japonica HOM05D006707 ORTHO05D008243 1.6e-47 195.3 349 39.3
Atru.BG.186.p Acer truncatum HOM05D006707 ORTHO05D008243 1.0e-46 192.6 218 70.2
Zm00001eb111370 Zea mays HOM05D006707 ORTHO05D008243 1.7e-46 191.8 327 37.3
PGR044G0521 Punica granatum HOM05D006707 ORTHO05D008243 6.6e-46 189.9 234 62.0
SGA_v2.0_scaffold192G40603 Striga asiatica HOM05D006707 ORTHO05D008243 1.9e-45 188.3 273 52.7
Glyma.18G207800 Glycine max HOM05D006707 ORTHO05D008243 4.0e-43 180.6 220 65.9
Phvul.010G093200 Phaseolus vulgaris HOM05D006707 ORTHO05D008243 8.9e-43 179.5 222 65.8
Lj1g0019371 Lotus japonicus HOM05D006707 ORTHO05D008243 6.4e-41 173.3 221 62.4
VMungo1383G0390 Vigna mungo HOM05D006707 ORTHO05D008243 1.1e-40 172.6 222 63.5
Haze_18837 Corylus avellana HOM05D006707 ORTHO05D008243 1.4e-40 172.2 141 60.3
TPR.G37093 Trifolium pratense HOM05D006707 ORTHO05D008243 2.4e-40 171.4 220 61.4
PSO017G3187 Papaver somniferum HOM05D006707 ORTHO05D008243 2.1e-39 168.3 196 48.5
HanXRQChr10g0279071 Helianthus annuus HOM05D006707 ORTHO05D008243 3.9e-38 164.1 316 48.4
TPR.G35815 Trifolium pratense HOM05D006707 ORTHO05D008243 5.1e-38 163.7 225 59.1
Lalb_Chr04g0260761 Lupinus albus HOM05D006707 ORTHO05D008243 5.6e-37 160.2 221 60.2
arahy.Tifrunner.gnm1.ann1.55ENF0 Arachis hypogaea HOM05D006707 ORTHO05D008243 2.0e-34 151.8 248 38.3
SEGI_24072 Sequoiadendron giganteum HOM05D006707 ORTHO05D008243 8.4e-33 146.4 291 48.5
ECA246G2801 Erigeron canadensis HOM05D006707 ORTHO05D008243 3.0e-30 137.9 164 45.7
arahy.Tifrunner.gnm1.ann1.1F7K7B Arachis hypogaea HOM05D006707 ORTHO05D008243 1.3e-28 132.5 144 52.8
QL11p014441 Quercus lobata HOM05D006707 ORTHO05D008243 1.1e-27 129.4 140 52.9
Phvul.008G091500 Phaseolus vulgaris HOM05D006707 ORTHO05D008243 3.1e-27 127.9 154 46.8
Ciclev10024364m.g Citrus clementina HOM05D006707 ORTHO05D008243 2.1e-15 88.6 58 70.7
CSS0017365 Camellia sinensis var. sinensis HOM05D006707 ORTHO05D008243 1.0e-14 86.3 60 70.0
CSS0026236 Camellia sinensis var. sinensis HOM05D006707 ORTHO05D008243 1.0e-14 86.3 60 70.0
HanXRQChr10g0277831 Helianthus annuus HOM05D006707 ORTHO05D008243 2.5e-13 81.6 200 29.0
Rhsim03G0043000 Rhododendron simsii HOM05D006707 ORTHO05D008243 4.3e-13 80.9 57 63.2
PSO017G4261 Papaver somniferum HOM05D006707 ORTHO05D008243 9.0e-11 73.2 48 70.8
THA.LOC104808118 Tarenaya hassleriana HOM05D006918 ORTHO05D008525 3.8e-09 67.8 141 29.1
CARHR072750 Cardamine hirsuta HOM05D006918 ORTHO05D008525 2.5e-08 65.1 138 26.1
CAN.G630.84 Capsicum annuum HOM05D006556 ORTHO05D008146 4.2e-08 64.3 103 30.1
GSVIVG01021583001 Vitis vinifera HOM05D006556 ORTHO05D008146 4.2e-08 64.3 98 32.7
Thhalv10018334m.g Eutrema salsugineum HOM05D006918 ORTHO05D008525 5.5e-08 63.9 138 26.1
Carub.0002s2595 Capsella rubella HOM05D006918 ORTHO05D008525 7.1e-08 63.5 130 26.9
Sp5g34130 Schrenkiella parvula HOM05D006918 ORTHO05D008525 1.2e-07 62.8 138 26.1
TAR371G0591 Trochodendron aralioides HOM05D006569 ORTHO05D007515 1.2e-07 62.8 140 28.6
A07p44220 Brassica napus HOM05D006918 ORTHO05D008525 2.7e-07 61.6 138 26.8
BolC6t40313H Brassica oleracea HOM05D006918 ORTHO05D008525 2.7e-07 61.6 138 26.8
BcaC08g47471 Brassica carinata HOM05D006918 ORTHO05D008525 3.5e-07 61.2 138 26.8
BraA07t31930Z Brassica rapa HOM05D006918 ORTHO05D008525 4.6e-07 60.8 130 27.7
CDE07G1153 Ceratophyllum demersum HOM05D007426 ORTHO05D009167 7.9e-07 60.1 103 31.1
AL2G39540 Arabidopsis lyrata HOM05D006918 ORTHO05D008525 1.0e-06 59.7 136 25.7
Hma1.2p1_0631F.1_g192380 Hydrangea macrophylla HOM05D006556 ORTHO05D008146 1.3e-06 59.3 98 30.6
Hma1.2p1_0631F.1_g192390 Hydrangea macrophylla HOM05D006556 ORTHO05D008146 1.3e-06 59.3 98 30.6
Hma1.2p1_0631F.1_g192404 Hydrangea macrophylla HOM05D006556 ORTHO05D008146 1.3e-06 59.3 98 30.6
AT1G79080 Arabidopsis thaliana HOM05D006918 ORTHO05D008525 3.0e-06 58.2 166 26.5
CSS0039062 Camellia sinensis var. sinensis HOM05D006556 ORTHO05D008146 3.0e-06 58.2 98 29.6
TAR636G1403 Trochodendron aralioides HOM05D006918 ORTHO05D008525 3.0e-06 58.2 153 25.5
ClCG02G005770 Citrullus lanatus HOM05D006858 ORTHO05D008767 5.1e-06 57.4 99 32.3
CARHR198030 Cardamine hirsuta HOM05D006569 ORTHO05D007515 6.7e-06 57.0 136 27.9
Os02g0321000 Oryza sativa ssp. japonica HOM05D017260 ORTHO05D014237 6.7e-06 57.0 125 24.0
C06p52950 Brassica napus HOM05D006918 ORTHO05D008525 8.7e-06 56.6 139 25.9
Cpa.g.sc101.54 Carica papaya HOM05D000104 ORTHO05D009920 8.7e-06 56.6 137 24.1
Os02g0582300 Oryza sativa ssp. japonica HOM05D003210 ORTHO05D000001 8.7e-06 56.6 145 22.1
Potri.005G102400 Populus trichocarpa HOM05D006556 ORTHO05D008146 8.7e-06 56.6 98 28.6


User provided reference genes

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