Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0312341 Rosa chinensis HOM05D002781 ORTHO05D003382 2.0e-35 151.8 70 100.0
Cfa013226 Carpinus fangiana HOM05D002781 ORTHO05D003382 4.5e-19 97.4 54 85.2
Haze_21649 Corylus avellana HOM05D002781 ORTHO05D003382 4.5e-19 97.4 54 85.2
Glyma.17G223600 Glycine max HOM05D002781 ORTHO05D003382 1.0e-18 96.3 54 83.3
BcaC09g51901 Brassica carinata HOM05D002781 ORTHO05D003382 1.3e-18 95.9 45 95.6
A01p07050 Brassica napus HOM05D002781 ORTHO05D003382 1.3e-18 95.9 45 95.6
C01p07800 Brassica napus HOM05D002781 ORTHO05D003382 1.3e-18 95.9 45 95.6
BolC1t00766H Brassica oleracea HOM05D002781 ORTHO05D003382 1.3e-18 95.9 45 95.6
BraA01t00657Z Brassica rapa HOM05D002781 ORTHO05D003382 1.3e-18 95.9 45 95.6
BraA03t15099Z Brassica rapa HOM05D002781 ORTHO05D003382 1.3e-18 95.9 45 95.6
FvH4_2g30550 Fragaria vesca HOM05D002781 ORTHO05D003382 1.3e-18 95.9 45 95.6
FAN20G1456 Fragaria x ananassa HOM05D002781 ORTHO05D003382 1.3e-18 95.9 45 95.6
FAN24G1450 Fragaria x ananassa HOM05D002781 ORTHO05D003382 1.3e-18 95.9 45 95.6
FAN27G0558 Fragaria x ananassa HOM05D002781 ORTHO05D003382 1.3e-18 95.9 45 95.6
MD08G1134400 Malus domestica HOM05D002781 ORTHO05D003382 1.3e-18 95.9 45 95.6
RcHm_v2.0_Chr6g0312531 Rosa chinensis HOM05D002781 ORTHO05D003382 1.3e-18 95.9 45 95.6
TWI63G0346 Tripterygium wilfordii HOM05D002781 ORTHO05D003382 1.3e-18 95.9 45 95.6
CANSAT78G1421 Cannabis sativa HOM05D002781 ORTHO05D003382 2.2e-18 95.1 45 93.3
CiPaw.07G216300 Carya illinoinensis HOM05D002781 ORTHO05D003382 2.2e-18 95.1 45 93.3
Glyma.14G101500 Glycine max HOM05D002781 ORTHO05D003382 2.2e-18 95.1 45 93.3
Sabra06G0064900 Salix brachista HOM05D002781 ORTHO05D003382 2.2e-18 95.1 45 93.3
TWI34G0804 Tripterygium wilfordii HOM05D002781 ORTHO05D003382 2.2e-18 95.1 45 93.3
VMungo0647G0806 Vigna mungo HOM05D002781 ORTHO05D003382 2.2e-18 95.1 45 93.3
MD15G1113400 Malus domestica HOM05D002781 ORTHO05D003382 2.9e-18 94.7 45 93.3
Ca_13063_v3 Cicer arietinum L. HOM05D002781 ORTHO05D003382 5.0e-18 94.0 45 91.1
Ciclev10004669m.g Citrus clementina HOM05D002781 ORTHO05D003382 5.0e-18 94.0 45 91.1
Eucgr.K02027 Eucalyptus grandis HOM05D002781 ORTHO05D003382 5.0e-18 94.0 45 91.1
Manes.18G112500 Manihot esculenta HOM05D002781 ORTHO05D003382 5.0e-18 94.0 45 93.3
Psat6g026040 Pisum sativum HOM05D002781 ORTHO05D003382 5.0e-18 94.0 45 91.1
Prupe.1G463800 Prunus persica HOM05D002781 ORTHO05D003382 5.0e-18 94.0 45 91.1
Rhsim07G0113300 Rhododendron simsii HOM05D002781 ORTHO05D003382 5.0e-18 94.0 54 81.5
Rhsim07G0171800 Rhododendron simsii HOM05D002781 ORTHO05D003382 5.0e-18 94.0 54 81.5
Sed0013692 Sechium edule HOM05D002781 ORTHO05D003382 5.0e-18 94.0 50 84.0
TAR383G0197 Trochodendron aralioides HOM05D002781 ORTHO05D003382 5.0e-18 94.0 54 81.5
vmacro05095 Vaccinium macrocarpon HOM05D002781 ORTHO05D003382 5.0e-18 94.0 54 81.5
AL7G20890 Arabidopsis lyrata HOM05D002781 ORTHO05D003382 6.5e-18 93.6 45 93.3
CDE09G0887 Ceratophyllum demersum HOM05D002781 ORTHO05D003382 6.5e-18 93.6 45 93.3
ClCG05G017340 Citrullus lanatus HOM05D002781 ORTHO05D003382 6.5e-18 93.6 45 93.3
Potri.006G085400 Populus trichocarpa HOM05D002781 ORTHO05D003382 6.5e-18 93.6 45 91.1
Sp7g29070 Schrenkiella parvula HOM05D002781 ORTHO05D003382 6.5e-18 93.6 45 93.3
Actinidia03329 Actinidia chinensis HOM05D002781 ORTHO05D003382 1.1e-17 92.8 45 91.1
BcaNung01536 Brassica carinata HOM05D002781 ORTHO05D003382 1.1e-17 92.8 45 93.3
MELO3C003651.2 Cucumis melo HOM05D002781 ORTHO05D003382 1.1e-17 92.8 45 91.1
CsaV3_3G046850 Cucumis sativus L. HOM05D002781 ORTHO05D003382 1.1e-17 92.8 45 91.1
Nn4g24942 Nelumbo nucifera HOM05D002781 ORTHO05D003382 1.1e-17 92.8 45 91.1
Nn8g41171 Nelumbo nucifera HOM05D002781 ORTHO05D003382 1.1e-17 92.8 45 91.1
Sed0018818 Sechium edule HOM05D002781 ORTHO05D003382 1.1e-17 92.8 45 91.1
Medtr1g014140 Medicago truncatula HOM05D002781 ORTHO05D003382 1.4e-17 92.4 45 88.9
PGR044G1761 Punica granatum HOM05D002781 ORTHO05D003382 1.4e-17 92.4 45 88.9
TPR.G30251 Trifolium pratense HOM05D002781 ORTHO05D003382 1.4e-17 92.4 45 88.9
TPR.G38912 Trifolium pratense HOM05D002781 ORTHO05D003382 1.4e-17 92.4 45 88.9
Atru.chr7.2704 Acer truncatum HOM05D002781 ORTHO05D003382 1.9e-17 92.0 45 86.7
AL5G34940 Arabidopsis lyrata HOM05D002781 ORTHO05D003382 1.9e-17 92.0 45 91.1
Lalb_Chr04g0248401 Lupinus albus HOM05D002781 ORTHO05D003382 1.9e-17 92.0 45 93.3
RcHm_v2.0_Chr6g0278871 Rosa chinensis HOM05D002781 ORTHO05D003382 1.9e-17 92.0 54 81.5
Aa31LG2G19130 Aethionema arabicum HOM05D002781 ORTHO05D003382 2.5e-17 91.7 45 91.1
ATR0626G153 Amborella trichopoda HOM05D002781 ORTHO05D003382 2.5e-17 91.7 54 81.5
CAN.G1921.4 Capsicum annuum HOM05D002781 ORTHO05D003382 2.5e-17 91.7 54 79.6
Ca_25166_v3 Cicer arietinum L. HOM05D002781 ORTHO05D003382 2.5e-17 91.7 45 88.9
TAR626G1626 Trochodendron aralioides HOM05D002781 ORTHO05D003382 2.5e-17 91.7 54 79.6
Carub.0007s0935 Capsella rubella HOM05D002781 ORTHO05D003382 3.2e-17 91.3 45 91.1
CARHR239090 Cardamine hirsuta HOM05D002781 ORTHO05D003382 3.2e-17 91.3 45 91.1
Thhalv10024945m.g Eutrema salsugineum HOM05D002781 ORTHO05D003382 3.2e-17 91.3 45 91.1
Lj6A614T28 Lonicera japonica HOM05D002781 ORTHO05D003382 3.2e-17 91.3 45 88.9
Peaxi162Scf00619g00214 Petunia axillaris HOM05D002781 ORTHO05D003382 3.2e-17 91.3 45 91.1
vmacro05094 Vaccinium macrocarpon HOM05D002781 ORTHO05D003382 3.2e-17 91.3 54 75.9
GSVIVG01035583001 Vitis vinifera HOM05D002781 ORTHO05D003382 4.2e-17 90.9 45 88.9
MSTRG.13933 Avicennia marina HOM05D002781 ORTHO05D003382 5.5e-17 90.5 45 88.9
COL.COLO4_19460 Corchorus olitorius HOM05D002781 ORTHO05D003382 5.5e-17 90.5 54 77.8
Duzib168G0624 Durio zibethinus HOM05D002781 ORTHO05D003382 5.5e-17 90.5 45 88.9
Lalb_Chr10g0107001 Lupinus albus HOM05D002781 ORTHO05D003382 5.5e-17 90.5 45 88.9
Nitab4.5_0000080g0320 Nicotiana tabacum HOM05D002781 ORTHO05D003382 5.5e-17 90.5 45 88.9
Nitab4.5_0001449g0030 Nicotiana tabacum HOM05D002781 ORTHO05D003382 5.5e-17 90.5 45 88.9
SGA_v2.0_scaffold20G09307 Striga asiatica HOM05D002781 ORTHO05D003382 5.5e-17 90.5 45 88.9
Thecc.09G000700 Theobroma cacao HOM05D002781 ORTHO05D003382 5.5e-17 90.5 45 88.9
unitig_0.g2193 Utricularia gibba HOM05D002781 ORTHO05D003382 5.5e-17 90.5 45 88.9
unitig_747.g21377 Utricularia gibba HOM05D002781 ORTHO05D003382 5.5e-17 90.5 45 88.9
ATR0665G581 Amborella trichopoda HOM05D002781 ORTHO05D003382 7.2e-17 90.1 45 91.1
Carub.0007s0994 Capsella rubella HOM05D002781 ORTHO05D003382 7.2e-17 90.1 45 88.9
Thhalv10015942m.g Eutrema salsugineum HOM05D002781 ORTHO05D003382 7.2e-17 90.1 45 88.9
Phvul.001G030000 Phaseolus vulgaris HOM05D002781 ORTHO05D003382 7.2e-17 90.1 45 88.9
Carub.0005s2052 Capsella rubella HOM05D002781 ORTHO05D003382 9.4e-17 89.7 45 88.9
Lj5g0001123 Lotus japonicus HOM05D002781 ORTHO05D003382 9.4e-17 89.7 45 86.7
DCAR_027376 Daucus carota HOM05D002781 ORTHO05D003382 1.2e-16 89.4 45 86.7
arahy.Tifrunner.gnm1.ann1.FW1LZ6 Arachis hypogaea HOM05D002781 ORTHO05D003382 1.6e-16 89.0 45 86.7
arahy.Tifrunner.gnm1.ann1.VR4H6N Arachis hypogaea HOM05D002781 ORTHO05D003382 1.6e-16 89.0 45 86.7
CAN.G694.96 Capsicum annuum HOM05D000185 ORTHO05D000368 1.6e-16 89.0 54 77.8
Migut.E01411 Erythranthe guttata HOM05D002781 ORTHO05D003382 1.6e-16 89.0 45 86.7
HanXRQChr11g0342691 Helianthus annuus HOM05D002781 ORTHO05D003382 1.6e-16 89.0 54 77.8
Oeu014115.1 Olea europaea HOM05D002781 ORTHO05D003382 1.6e-16 89.0 45 86.7
Oeu019276.1 Olea europaea HOM05D002781 ORTHO05D003382 1.6e-16 89.0 45 86.7
Solyc05g056250.3 Solanum lycopersicum HOM05D002781 ORTHO05D003382 1.6e-16 89.0 45 86.7
Sopen05g034640 Solanum pennellii HOM05D002781 ORTHO05D003382 1.6e-16 89.0 45 86.7
SGA_v2.0_scaffold17G08116 Striga asiatica HOM05D002781 ORTHO05D003382 1.6e-16 89.0 45 86.7
Prupe.8G055000 Prunus persica HOM05D002781 ORTHO05D003382 2.1e-16 88.6 54 77.8
QL12p029302 Quercus lobata HOM05D002781 ORTHO05D003382 2.1e-16 88.6 43 88.4
RcHm_v2.0_Chr5g0032141 Rosa chinensis HOM05D002781 ORTHO05D003382 2.1e-16 88.6 54 77.8
COL.COLO4_18646 Corchorus olitorius HOM05D002781 ORTHO05D003382 2.7e-16 88.2 45 86.7
Pp3c21_10900 Physcomitrium patens HOM05D002781 ORTHO05D003382 2.7e-16 88.2 45 88.9
Hund22584 Selenicereus undatus HOM05D002781 ORTHO05D003382 2.7e-16 88.2 45 88.9
THA.LOC104803886 Tarenaya hassleriana HOM05D002781 ORTHO05D003382 2.7e-16 88.2 45 84.4
Aqoxy7G02657 Aquilegia oxysepala HOM05D002781 ORTHO05D003382 3.6e-16 87.8 54 77.8
BcaB01g00260 Brassica carinata HOM05D002781 ORTHO05D003382 3.6e-16 87.8 45 84.4
CAN.G786.4 Capsicum annuum HOM05D002781 ORTHO05D003382 3.6e-16 87.8 45 86.7
CAN.G786.5 Capsicum annuum HOM05D002781 ORTHO05D003382 3.6e-16 87.8 45 86.7
FAN24G1470 Fragaria x ananassa HOM05D002781 ORTHO05D003382 3.6e-16 87.8 49 81.6
FAN24G3093 Fragaria x ananassa HOM05D002781 ORTHO05D003382 3.6e-16 87.8 49 81.6
PSO017G0307 Papaver somniferum HOM05D002781 ORTHO05D003382 3.6e-16 87.8 45 84.4
PSO478G0309 Papaver somniferum HOM05D002781 ORTHO05D003382 3.6e-16 87.8 45 84.4
Os02g0686400 Oryza sativa ssp. japonica HOM05D002781 ORTHO05D003382 4.7e-16 87.4 45 86.7
CDE02G0432 Ceratophyllum demersum HOM05D002781 ORTHO05D003382 6.1e-16 87.0 41 92.7
Migut.E00796 Erythranthe guttata HOM05D002781 ORTHO05D003382 6.1e-16 87.0 56 73.2
SGA_v2.0_scaffold17G08122 Striga asiatica HOM05D002781 ORTHO05D003382 6.1e-16 87.0 45 86.7
Lsat_1_v5_gn_1_72341 Lactuca sativa HOM05D002781 ORTHO05D003382 8.0e-16 86.7 54 75.9
AT4G31180 Arabidopsis thaliana HOM05D002781 ORTHO05D003382 1.0e-15 86.3 45 86.7
C05p23890 Brassica napus HOM05D002781 ORTHO05D003382 1.0e-15 86.3 45 84.4
BolC5t31108H Brassica oleracea HOM05D002781 ORTHO05D003382 1.0e-15 86.3 45 84.4
BolC5t31115H Brassica oleracea HOM05D002781 ORTHO05D003382 1.0e-15 86.3 45 84.4
CSS0008198 Camellia sinensis var. sinensis HOM05D002781 ORTHO05D003382 1.0e-15 86.3 45 86.7
CSS0028741 Camellia sinensis var. sinensis HOM05D002781 ORTHO05D003382 1.0e-15 86.3 45 86.7
CSS0040336 Camellia sinensis var. sinensis HOM05D002781 ORTHO05D003382 1.0e-15 86.3 45 86.7
Cpa.g.sc37.195 Carica papaya HOM05D002781 ORTHO05D003382 1.0e-15 86.3 45 86.7
Rhsim07G0112700 Rhododendron simsii HOM05D002781 ORTHO05D003382 1.0e-15 86.3 42 88.1
SalBow8G0076 Salvia bowleyana HOM05D002781 ORTHO05D003382 1.0e-15 86.3 45 84.4
BcaC07g39721 Brassica carinata HOM05D002781 ORTHO05D003382 1.4e-15 85.9 45 84.4
BcaNung07161 Brassica carinata HOM05D002781 ORTHO05D003382 1.4e-15 85.9 45 84.4
BolC8t50495H Brassica oleracea HOM05D002781 ORTHO05D003382 1.4e-15 85.9 45 84.4
Cre06.g279150 Chlamydomonas reinhardtii HOM05D002781 ORTHO05D003382 1.4e-15 85.9 45 82.2
Zm00001eb231430 Zea mays HOM05D002781 ORTHO05D003382 1.4e-15 85.9 45 84.4
Gohir.A07G001200 Gossypium hirsutum HOM05D002781 ORTHO05D003382 1.8e-15 85.5 45 82.2
Gohir.D07G001600 Gossypium hirsutum HOM05D002781 ORTHO05D003382 1.8e-15 85.5 45 82.2
Gorai.001G001300 Gossypium raimondii HOM05D002781 ORTHO05D003382 1.8e-15 85.5 45 82.2
Zm00001eb338990 Zea mays HOM05D002781 ORTHO05D003382 2.3e-15 85.1 44 84.1
Ah.13g073200 Amaranthus hybridus HOM05D002781 ORTHO05D003382 3.0e-15 84.7 45 84.4
EL10Ac3g06163 Beta vulgaris HOM05D002781 ORTHO05D003382 3.0e-15 84.7 45 84.4
BcaNung01331 Brassica carinata HOM05D002781 ORTHO05D003382 3.0e-15 84.7 45 84.4
FvH4_2g15870 Fragaria vesca HOM05D002781 ORTHO05D003382 3.0e-15 84.7 49 79.6
FvH4_2g15910 Fragaria vesca HOM05D002781 ORTHO05D003382 3.0e-15 84.7 49 79.6
SalBow1G0367 Salvia bowleyana HOM05D002781 ORTHO05D003382 3.0e-15 84.7 45 80.0
SalBow1G1421 Salvia bowleyana HOM05D002781 ORTHO05D003382 3.0e-15 84.7 45 80.0
AUR62023713 Chenopodium quinoa HOM05D002781 ORTHO05D003382 3.9e-15 84.3 45 84.4
Migut.E01595 Erythranthe guttata HOM05D002781 ORTHO05D003382 3.9e-15 84.3 56 71.4
Thhalv10023019m.g Eutrema salsugineum HOM05D002781 ORTHO05D003382 5.2e-15 84.0 42 88.1
Peaxi162Scf00858g00018 Petunia axillaris HOM05D002781 ORTHO05D003382 5.2e-15 84.0 45 84.4
Aa31LG10G520 Aethionema arabicum HOM05D002781 ORTHO05D003382 6.7e-15 83.6 45 80.0
AagrBONN_evm.TU.Sc2ySwM_228.801 Anthoceros agrestis HOM05D002781 ORTHO05D003382 6.7e-15 83.6 45 82.2
ECA248G0538 Erigeron canadensis HOM05D002781 ORTHO05D003382 6.7e-15 83.6 45 84.4
HPP92_010332 Vanilla planifolia HOM05D002781 ORTHO05D003382 6.7e-15 83.6 45 82.2
AL7G11530 Arabidopsis lyrata HOM05D002781 ORTHO05D003382 8.8e-15 83.2 45 82.2
AT4G26870 Arabidopsis thaliana HOM05D002781 ORTHO05D003382 8.8e-15 83.2 45 82.2
Cc11_g01270 Coffea canephora HOM05D002781 ORTHO05D003382 8.8e-15 83.2 45 82.2
Rhsim07G0113200 Rhododendron simsii HOM05D002781 ORTHO05D003382 1.1e-14 82.8 43 86.0
SalBow1G4615 Salvia bowleyana HOM05D002781 ORTHO05D003382 1.1e-14 82.8 44 79.5
AUR62002480 Chenopodium quinoa HOM05D002781 ORTHO05D003382 2.0e-14 82.0 45 82.2
COL.COLO4_25680 Corchorus olitorius HOM05D002781 ORTHO05D003382 2.0e-14 82.0 54 70.4
Thhalv10023162m.g Eutrema salsugineum HOM05D002781 ORTHO05D003382 2.6e-14 81.6 45 82.2
FAN27G2211 Fragaria x ananassa HOM05D002781 ORTHO05D003382 4.4e-14 80.9 49 77.6
Mapoly0132s0010 Marchantia polymorpha HOM05D002781 ORTHO05D003382 4.4e-14 80.9 45 80.0
SMO351G0410 Selaginella moellendorffii HOM05D002781 ORTHO05D003382 4.4e-14 80.9 45 80.0
Medtr5g028360 Medicago truncatula HOM05D002781 ORTHO05D003382 5.7e-14 80.5 45 77.8
QL12p029213 Quercus lobata HOM05D002781 ORTHO05D003382 9.7e-14 79.7 45 82.2
CBR_g19622 Chara braunii HOM05D002781 ORTHO05D003382 1.3e-13 79.3 45 77.8
SEGI_10721 Sequoiadendron giganteum HOM05D002781 ORTHO05D003382 1.7e-13 79.0 45 80.0
COL.COLO4_27085 Corchorus olitorius HOM05D002781 ORTHO05D003382 3.7e-13 77.8 45 77.8
Rhsim09G0058200 Rhododendron simsii HOM05D002781 ORTHO05D003382 3.7e-13 77.8 42 81.0
Thecc.02G023900 Theobroma cacao HOM05D002781 ORTHO05D003382 3.7e-13 77.8 45 80.0
PRCOL_00003891 Prasinoderma coloniale HOM05D002781 ORTHO05D003382 4.8e-13 77.4 45 73.3
TPR.G3453 Trifolium pratense HOM05D002781 ORTHO05D003382 4.8e-13 77.4 45 73.3
Haze_27085 Corylus avellana HOM05D002781 ORTHO05D003382 1.8e-12 75.5 45 71.1
MCO02G405 Micromonas commoda HOM05D002781 ORTHO05D003382 2.4e-12 75.1 45 75.6
SGA_v2.0_scaffold63G21766 Striga asiatica HOM05D002781 ORTHO05D003382 2.4e-12 75.1 54 68.5
ATR0618G057 Amborella trichopoda HOM05D002781 ORTHO05D003382 7.0e-12 73.6 45 71.1
MBI13_g33568_MAGBIO Magnolia biondii HOM05D002781 ORTHO05D003382 1.3e-10 69.3 35 85.7
arahy.Tifrunner.gnm1.ann1.V530VD Arachis hypogaea HOM05D002781 ORTHO05D003382 1.7e-10 68.9 42 69.0
CARHR112510 Cardamine hirsuta HOM05D002781 ORTHO05D003382 1.7e-10 68.9 37 86.5
ECA247G1103 Erigeron canadensis HOM05D002781 ORTHO05D003382 8.5e-10 66.6 36 80.6
BolC1t01007H Brassica oleracea HOM05D002781 ORTHO05D003382 1.5e-09 65.9 34 82.4
arahy.Tifrunner.gnm1.ann1.WR8BUK Arachis hypogaea HOM05D002781 ORTHO05D003382 5.5e-09 63.9 42 71.4
Cfa024060 Carpinus fangiana HOM05D002781 ORTHO05D003382 1.0e-07 59.7 45 57.8
C08p28930 Brassica napus HOM05D002781 ORTHO05D003382 5.2e-07 57.4 31 83.9
Aqoxy4G02333 Aquilegia oxysepala HOM05D002781 ORTHO05D003382 8.8e-07 56.6 38 60.5
SGA_v2.0_scaffold51G18727 Striga asiatica HOM05D002781 ORTHO05D003382 2.0e-06 55.5 45 64.4


User provided reference genes

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