Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0305361 Rosa chinensis HOM05D006943 ORTHO05D008565 1.0e-192 677.2 530 100.0
FAN15G2754 Fragaria x ananassa HOM05D006943 ORTHO05D008565 1.3e-121 441.0 536 72.6
FAN20G3130 Fragaria x ananassa HOM05D006943 ORTHO05D008565 8.4e-118 428.3 536 73.9
FvH4_2g36510 Fragaria vesca HOM05D006943 ORTHO05D008565 5.5e-109 399.1 561 69.7
FAN27G2029 Fragaria x ananassa HOM05D006943 ORTHO05D008565 5.1e-107 392.5 561 67.7
Prupe.1G456500 Prunus persica HOM05D006943 ORTHO05D008565 1.1e-48 198.7 199 55.8
QL12p025818 Quercus lobata HOM05D006943 ORTHO05D008565 9.9e-42 175.6 187 54.0
Dinv37491 Davidia involucrata HOM05D006943 ORTHO05D008565 3.2e-40 170.6 161 53.4
MD15G1104200 Malus domestica HOM05D006943 ORTHO05D008565 3.5e-39 167.2 528 32.6
CANSAT35G2034 Cannabis sativa HOM05D006943 ORTHO05D008565 7.8e-39 166.0 174 51.7
MD08G1124900 Malus domestica HOM05D006943 ORTHO05D008565 1.3e-38 165.2 187 51.3
ClCG05G026350 Citrullus lanatus HOM05D006943 ORTHO05D008565 1.7e-38 164.9 157 54.1
Sed0013911 Sechium edule HOM05D006943 ORTHO05D008565 3.0e-38 164.1 177 48.6
MELO3C003604.2 Cucumis melo HOM05D006943 ORTHO05D008565 4.3e-37 160.2 170 51.2
Dinv38807 Davidia involucrata HOM05D006943 ORTHO05D008565 4.3e-37 160.2 154 53.9
CsaV3_3G047250 Cucumis sativus L. HOM05D006943 ORTHO05D008565 7.3e-37 159.5 161 54.7
THA.LOC104803585 Tarenaya hassleriana HOM05D006943 ORTHO05D008565 6.2e-36 156.4 182 47.8
TAR636G0756 Trochodendron aralioides HOM05D006943 ORTHO05D008565 1.1e-35 155.6 157 53.5
GSVIVG01035569001 Vitis vinifera HOM05D006943 ORTHO05D008565 6.8e-35 152.9 184 46.2
Cpa.g.sc148.5 Carica papaya HOM05D006943 ORTHO05D008565 8.9e-35 152.5 174 48.9
Thhalv10025787m.g Eutrema salsugineum HOM05D006943 ORTHO05D008565 2.0e-34 151.4 163 50.3
Nn5g27072 Nelumbo nucifera HOM05D006943 ORTHO05D008565 2.0e-34 151.4 157 51.0
TWI63G1698 Tripterygium wilfordii HOM05D006943 ORTHO05D008565 7.6e-34 149.4 155 51.0
AL7G20800 Arabidopsis lyrata HOM05D006943 ORTHO05D008565 2.2e-33 147.9 180 47.2
Duzib168G0749 Durio zibethinus HOM05D006943 ORTHO05D008565 2.2e-33 147.9 174 44.8
Eucgr.L02411 Eucalyptus grandis HOM05D006943 ORTHO05D008565 2.2e-33 147.9 142 52.8
Eucgr.C02135 Eucalyptus grandis HOM05D006943 ORTHO05D008565 3.8e-33 147.1 157 51.0
CSS0048200 Camellia sinensis var. sinensis HOM05D006943 ORTHO05D008565 4.9e-33 146.7 158 49.4
Haze_21789 Corylus avellana HOM05D006943 ORTHO05D008565 4.9e-33 146.7 513 27.9
AT4G31270 Arabidopsis thaliana HOM05D006943 ORTHO05D008565 8.4e-33 146.0 171 48.0
Carub.0007s0929 Capsella rubella HOM05D006943 ORTHO05D008565 1.4e-32 145.2 176 47.2
Cfa013306 Carpinus fangiana HOM05D006943 ORTHO05D008565 1.4e-32 145.2 511 29.2
BraA08t33836Z Brassica rapa HOM05D006943 ORTHO05D008565 1.9e-32 144.8 161 47.8
Manes.16G137900 Manihot esculenta HOM05D006943 ORTHO05D008565 2.4e-32 144.4 136 52.9
BcaB03g12686 Brassica carinata HOM05D006943 ORTHO05D008565 3.2e-32 144.1 164 47.0
CARHR239150 Cardamine hirsuta HOM05D006943 ORTHO05D008565 3.2e-32 144.1 168 50.0
Aa31LG2G19090 Aethionema arabicum HOM05D006943 ORTHO05D008565 4.1e-32 143.7 175 46.3
BolC3t21121H Brassica oleracea HOM05D006943 ORTHO05D008565 4.1e-32 143.7 161 47.2
CSS0049214 Camellia sinensis var. sinensis HOM05D006943 ORTHO05D008565 4.1e-32 143.7 142 50.7
A08p18750 Brassica napus HOM05D006943 ORTHO05D008565 5.4e-32 143.3 159 47.2
CSS0017346 Camellia sinensis var. sinensis HOM05D006943 ORTHO05D008565 5.4e-32 143.3 146 50.7
BcaC01g01105 Brassica carinata HOM05D006943 ORTHO05D008565 7.1e-32 142.9 158 46.8
C03p88130 Brassica napus HOM05D006943 ORTHO05D008565 7.1e-32 142.9 158 46.8
Sp7g29130 Schrenkiella parvula HOM05D006943 ORTHO05D008565 7.1e-32 142.9 186 45.7
EL10Ac2g03684 Beta vulgaris HOM05D006943 ORTHO05D008565 9.2e-32 142.5 165 49.1
Potri.006G279100 Populus trichocarpa HOM05D006943 ORTHO05D008565 1.6e-31 141.7 129 49.6
Actinidia25739 Actinidia chinensis HOM05D006943 ORTHO05D008565 6.0e-31 139.8 167 48.5
Hund03260 Selenicereus undatus HOM05D006943 ORTHO05D008565 6.6e-30 136.3 147 46.3
arahy.Tifrunner.gnm1.ann1.HML22G Arachis hypogaea HOM05D006943 ORTHO05D008565 1.9e-29 134.8 172 44.2
Sc06g0001270 Simmondsia chinensis HOM05D006943 ORTHO05D008565 1.9e-29 134.8 167 44.3
AUR62038724 Chenopodium quinoa HOM05D006943 ORTHO05D008565 1.2e-28 132.1 157 46.5
AUR62043827 Chenopodium quinoa HOM05D006943 ORTHO05D008565 1.2e-28 132.1 157 46.5
AUR62020649 Chenopodium quinoa HOM05D006943 ORTHO05D008565 1.6e-28 131.7 157 45.9
Lalb_Chr22g0361191 Lupinus albus HOM05D006943 ORTHO05D008565 2.1e-28 131.3 172 43.6
Potri.018G002801 Populus trichocarpa HOM05D006943 ORTHO05D008565 4.7e-28 130.2 156 46.2
arahy.Tifrunner.gnm1.ann1.X8DLDE Arachis hypogaea HOM05D006943 ORTHO05D008565 6.2e-28 129.8 172 43.0
Ciclev10009072m.g Citrus clementina HOM05D006943 ORTHO05D008565 1.4e-27 128.6 178 42.7
Ah.11g044140 Amaranthus hybridus HOM05D006943 ORTHO05D008565 3.1e-27 127.5 162 47.5
PSO170G5679 Papaver somniferum HOM05D006943 ORTHO05D008565 1.2e-26 125.6 178 40.4
PSO063G4511 Papaver somniferum HOM05D006943 ORTHO05D008565 4.4e-26 123.6 178 39.9
Aqoxy7G02511 Aquilegia oxysepala HOM05D006943 ORTHO05D008565 5.8e-26 123.2 158 39.9
MBI16_g00837_MAGBIO Magnolia biondii HOM05D006943 ORTHO05D008565 1.3e-25 122.1 135 44.4
Glyma.17G194700 Glycine max HOM05D006943 ORTHO05D008565 8.4e-25 119.4 170 42.9
Atru.chr7.2692 Acer truncatum HOM05D006943 ORTHO05D008565 1.4e-24 118.6 155 48.4
Cc10_g14290 Coffea canephora HOM05D006943 ORTHO05D008565 2.1e-23 114.8 171 36.3
Lsat_1_v5_gn_3_68681 Lactuca sativa HOM05D006943 ORTHO05D008565 4.6e-23 113.6 175 43.4
Nitab4.5_0001942g0070 Nicotiana tabacum HOM05D006943 ORTHO05D008565 4.6e-23 113.6 177 38.4
TPR.G11968 Trifolium pratense HOM05D006943 ORTHO05D008565 7.8e-23 112.8 164 42.1
HanXRQChr17g0539241 Helianthus annuus HOM05D006943 ORTHO05D008565 1.0e-22 112.5 136 47.8
PGSC0003DMG400029553 Solanum tuberosum HOM05D006943 ORTHO05D008565 2.3e-22 111.3 175 36.0
Glyma.14G138000 Glycine max HOM05D006943 ORTHO05D008565 3.0e-22 110.9 169 42.6
Peaxi162Scf00213g00939 Petunia axillaris HOM05D006943 ORTHO05D008565 3.9e-22 110.5 173 36.4
Solyc08g069160.3 Solanum lycopersicum HOM05D006943 ORTHO05D008565 3.9e-22 110.5 175 36.0
Sopen08g022790 Solanum pennellii HOM05D006943 ORTHO05D008565 3.9e-22 110.5 175 36.0
Nitab4.5_0005058g0010 Nicotiana tabacum HOM05D006943 ORTHO05D008565 5.1e-22 110.2 176 38.1
HPP92_021992 Vanilla planifolia HOM05D006943 ORTHO05D008565 5.1e-22 110.2 165 38.8
HanXRQChr03g0081291 Helianthus annuus HOM05D006943 ORTHO05D008565 1.1e-21 109.0 174 42.0
Phvul.001G077900 Phaseolus vulgaris HOM05D006943 ORTHO05D008565 1.1e-21 109.0 163 39.9
ECA240G4190 Erigeron canadensis HOM05D006943 ORTHO05D008565 1.9e-21 108.2 128 45.3
VMungo0647G1044 Vigna mungo HOM05D006943 ORTHO05D008565 2.5e-21 107.8 166 43.4
Lsat_1_v5_gn_5_56401 Lactuca sativa HOM05D006943 ORTHO05D008565 4.3e-21 107.1 176 40.9
Medtr1g009220 Medicago truncatula HOM05D006943 ORTHO05D008565 4.3e-21 107.1 173 40.5
CDE02G0425 Ceratophyllum demersum HOM05D006943 ORTHO05D008565 9.6e-21 105.9 178 33.7
Lj5g0018295 Lotus japonicus HOM05D006943 ORTHO05D008565 1.6e-20 105.1 167 39.5
Psat6g033160 Pisum sativum HOM05D006943 ORTHO05D008565 2.8e-20 104.4 140 44.3
DCAR_004562 Daucus carota HOM05D006943 ORTHO05D008565 3.6e-20 104.0 107 45.8
ECA246G0365 Erigeron canadensis HOM05D006943 ORTHO05D008565 4.8e-20 103.6 157 41.4
Ca_01518_v3 Cicer arietinum L. HOM05D006943 ORTHO05D008565 6.2e-20 103.2 166 40.4
CSS0045137 Camellia sinensis var. sinensis HOM05D006943 ORTHO05D008565 1.1e-19 102.4 149 43.0
CAN.G480.10 Capsicum annuum HOM05D006943 ORTHO05D008565 2.4e-19 101.3 173 34.1
ATR0626G281 Amborella trichopoda HOM05D006943 ORTHO05D008565 9.0e-19 99.4 141 42.6
COL.COLO4_18631 Corchorus olitorius HOM05D006943 ORTHO05D008565 2.0e-18 98.2 177 36.7
Oeu008780.1 Olea europaea HOM05D006943 ORTHO05D008565 3.4e-18 97.4 135 41.5
MSTRG.13940 Avicennia marina HOM05D006943 ORTHO05D008565 1.3e-17 95.5 78 55.1
MSTRG.13929 Avicennia marina HOM05D006943 ORTHO05D008565 1.1e-16 92.4 76 55.3
Os02g0174300 Oryza sativa ssp. japonica HOM05D006943 ORTHO05D008565 5.4e-16 90.1 151 35.8
Zm00001eb233350 Zea mays HOM05D006943 ORTHO05D008565 2.1e-15 88.2 148 35.8
Migut.E01408 Erythranthe guttata HOM05D006943 ORTHO05D008565 3.5e-15 87.4 78 52.6
Migut.E01420 Erythranthe guttata HOM05D006943 ORTHO05D008565 3.5e-15 87.4 78 52.6
Actinidia03335 Actinidia chinensis HOM05D006943 ORTHO05D008565 1.3e-14 85.5 63 63.5
SalBow8G0710 Salvia bowleyana HOM05D006943 ORTHO05D008565 1.3e-14 85.5 72 51.4
Atru.chr6.219 Acer truncatum HOM05D006943 ORTHO05D008565 1.8e-14 85.1 60 61.7
CSS0031863 Camellia sinensis var. sinensis HOM05D006943 ORTHO05D008565 3.3e-13 80.9 149 36.9
Phvul.002G281800 Phaseolus vulgaris HOM05D002537 ORTHO05D002751 6.9e-11 73.2 140 33.6
DCAR_021402 Daucus carota HOM05D002537 ORTHO05D002751 1.2e-10 72.4 179 33.0
Prupe.5G142400 Prunus persica HOM05D002537 ORTHO05D002751 1.5e-10 72.0 127 32.3
FAN13G0340 Fragaria x ananassa HOM05D002537 ORTHO05D002751 7.6e-10 69.7 131 30.5
Hund02506 Selenicereus undatus HOM05D002537 ORTHO05D002751 7.6e-10 69.7 143 29.4
VMungo0251G0975 Vigna mungo HOM05D002537 ORTHO05D002751 7.6e-10 69.7 127 32.3
FvH4_5g09440 Fragaria vesca HOM05D002537 ORTHO05D002751 9.9e-10 69.3 129 29.5
FAN18G1947 Fragaria x ananassa HOM05D002537 ORTHO05D002751 9.9e-10 69.3 129 29.5
Thecc.09G002300 Theobroma cacao HOM05D006943 ORTHO05D008565 9.9e-10 69.3 61 55.7
Cc00_g33880 Coffea canephora HOM05D002537 ORTHO05D002751 1.3e-09 68.9 147 33.3
Atru.chr6.1911 Acer truncatum HOM05D002537 ORTHO05D002751 2.2e-09 68.2 165 32.1
FAN04G1977 Fragaria x ananassa HOM05D002537 ORTHO05D002751 2.2e-09 68.2 129 29.5
Peaxi162Scf00314g00642 Petunia axillaris HOM05D002537 ORTHO05D002751 2.2e-09 68.2 120 30.8
QL10p000562 Quercus lobata HOM05D002537 ORTHO05D002751 2.2e-09 68.2 160 31.9
Cc00_g33380 Coffea canephora HOM05D002537 ORTHO05D002751 2.9e-09 67.8 147 32.7
Lsat_1_v5_gn_5_10240 Lactuca sativa HOM05D002537 ORTHO05D002751 2.9e-09 67.8 122 34.4
FAN08G1434 Fragaria x ananassa HOM05D002537 ORTHO05D002751 3.8e-09 67.4 130 29.2
Mapoly0001s0020 Marchantia polymorpha HOM05D002537 ORTHO05D002751 3.8e-09 67.4 121 31.4
PGSC0003DMG400014176 Solanum tuberosum HOM05D002537 ORTHO05D002751 3.8e-09 67.4 119 31.9
Lalb_Chr12g0202491 Lupinus albus HOM05D002537 ORTHO05D002751 4.9e-09 67.0 124 31.5
Thecc.03G139900 Theobroma cacao HOM05D002537 ORTHO05D002751 4.9e-09 67.0 113 31.0
AagrBONN_evm.TU.Sc2ySwM_228.3565 Anthoceros agrestis HOM05D002537 ORTHO05D002751 6.4e-09 66.6 81 34.6
Glyma.08G007800 Glycine max HOM05D002537 ORTHO05D002751 6.4e-09 66.6 123 31.7
SMO351G0173 Selaginella moellendorffii HOM05D002537 ORTHO05D002751 6.4e-09 66.6 139 28.1
Solyc03g118230.3 Solanum lycopersicum HOM05D002537 ORTHO05D002751 6.4e-09 66.6 119 31.9
Sopen03g037140 Solanum pennellii HOM05D002537 ORTHO05D002751 6.4e-09 66.6 119 31.9
Zm00001eb421380 Zea mays HOM05D002537 ORTHO05D002751 6.4e-09 66.6 157 33.1
Ah.02g114620 Amaranthus hybridus HOM05D002537 ORTHO05D002751 1.1e-08 65.9 136 33.8
Ca_16813_v3 Cicer arietinum L. HOM05D002537 ORTHO05D002751 1.1e-08 65.9 124 31.5
RcHm_v2.0_Chr7g0188751 Rosa chinensis HOM05D002537 ORTHO05D002751 1.1e-08 65.9 129 29.5
CAN.G843.13 Capsicum annuum HOM05D002537 ORTHO05D002751 1.4e-08 65.5 143 29.4
Lalb_Chr07g0183801 Lupinus albus HOM05D002537 ORTHO05D002751 1.4e-08 65.5 124 29.8
Medtr8g100130 Medicago truncatula HOM05D002537 ORTHO05D002751 1.4e-08 65.5 124 30.6
GSVIVG01008644001 Vitis vinifera HOM05D002537 ORTHO05D002751 1.4e-08 65.5 131 31.3
ECA246G2368 Erigeron canadensis HOM05D002537 ORTHO05D002751 1.9e-08 65.1 122 33.6
Hma1.2p1_0577F.1_g182310 Hydrangea macrophylla HOM05D002537 ORTHO05D002751 1.9e-08 65.1 123 31.7
Pp3c4_22830 Physcomitrium patens HOM05D002537 ORTHO05D002751 1.9e-08 65.1 147 30.6
Pp3c4_22880 Physcomitrium patens HOM05D002537 ORTHO05D002751 1.9e-08 65.1 147 30.6
MD14G1147800 Malus domestica HOM05D002537 ORTHO05D002751 3.2e-08 64.3 165 27.3
Nitab4.5_0010249g0020 Nicotiana tabacum HOM05D002537 ORTHO05D002751 3.2e-08 64.3 119 31.1
Zm00001eb084860 Zea mays HOM05D002537 ORTHO05D002751 3.2e-08 64.3 159 29.6
Dinv23220 Davidia involucrata HOM05D002537 ORTHO05D002751 4.2e-08 63.9 115 30.4
Duzib084G0396 Durio zibethinus HOM05D002537 ORTHO05D002751 4.2e-08 63.9 140 27.9
Nitab4.5_0000976g0050 Nicotiana tabacum HOM05D002537 ORTHO05D002751 4.2e-08 63.9 119 31.1
Glyma.05G200400 Glycine max HOM05D002537 ORTHO05D002751 5.5e-08 63.5 126 30.2
Psat7g039360 Pisum sativum HOM05D002537 ORTHO05D002751 5.5e-08 63.5 124 29.8
HanXRQChr05g0155411 Helianthus annuus HOM05D002537 ORTHO05D002751 7.1e-08 63.2 153 31.4
Pp3c26_2600 Physcomitrium patens HOM05D002537 ORTHO05D002751 7.1e-08 63.2 126 31.0
Pp3c26_2630 Physcomitrium patens HOM05D002537 ORTHO05D002751 7.1e-08 63.2 126 31.0
Sabra15G0126000 Salix brachista HOM05D002537 ORTHO05D002751 7.1e-08 63.2 125 30.4
HanXRQChr16g0529331 Helianthus annuus HOM05D002537 ORTHO05D002751 1.2e-07 62.4 128 30.5
Ciclev10033491m.g Citrus clementina HOM05D002537 ORTHO05D002751 1.6e-07 62.0 193 26.4
MD06G1131400 Malus domestica HOM05D002537 ORTHO05D002751 1.6e-07 62.0 168 26.2
Manes.15G141750 Manihot esculenta HOM05D003725 ORTHO05D004294 1.6e-07 62.0 76 42.1
Pp3c15_4190 Physcomitrium patens HOM05D002537 ORTHO05D002751 1.6e-07 62.0 157 24.8
Mapoly0003s0164 Marchantia polymorpha HOM05D003725 ORTHO05D004294 2.1e-07 61.6 123 30.1
Lj9C486T16 Lonicera japonica HOM05D002537 ORTHO05D002751 2.7e-07 61.2 113 32.7
Cpa.g.sc2.95 Carica papaya HOM05D003725 ORTHO05D004294 3.5e-07 60.8 115 33.9
Lalb_Chr04g0258121 Lupinus albus HOM05D002537 ORTHO05D002751 3.5e-07 60.8 131 28.2
Pp3c12_22800 Physcomitrium patens HOM05D002537 ORTHO05D002751 3.5e-07 60.8 141 27.0
Thecc.02G298200 Theobroma cacao HOM05D003725 ORTHO05D004294 3.5e-07 60.8 78 38.5
VMungo0720G0266 Vigna mungo HOM05D006943 ORTHO05D008565 3.5e-07 60.8 129 37.2
AagrBONN_evm.TU.Sc2ySwM_228.3719 Anthoceros agrestis HOM05D003725 ORTHO05D004294 4.6e-07 60.5 124 29.0
AUR62009533 Chenopodium quinoa HOM05D002537 ORTHO05D002751 4.6e-07 60.5 104 33.7
Potri.015G105800 Populus trichocarpa HOM05D002537 ORTHO05D002751 6.0e-07 60.1 115 29.6
Manes.17G092600 Manihot esculenta HOM05D003725 ORTHO05D004294 7.9e-07 59.7 76 38.2
Mapoly0056s0059 Marchantia polymorpha HOM05D002537 ORTHO05D002751 7.9e-07 59.7 173 28.3
Pp3c4_270 Physcomitrium patens HOM05D002537 ORTHO05D002751 1.0e-06 59.3 141 26.2
Lj4g0017089 Lotus japonicus HOM05D002537 ORTHO05D002751 1.3e-06 58.9 129 27.1
EL10Ac5g11294 Beta vulgaris HOM05D002537 ORTHO05D002751 1.8e-06 58.5 126 32.5
CBR_g38396 Chara braunii HOM05D002537 ORTHO05D002751 1.8e-06 58.5 119 30.3
Lalb_Chr13g0296971 Lupinus albus HOM05D002537 ORTHO05D002751 1.8e-06 58.5 137 27.7
TPR.G40627 Trifolium pratense HOM05D002537 ORTHO05D002751 2.3e-06 58.2 191 26.2
Manes.06G126500 Manihot esculenta HOM05D002537 ORTHO05D002751 3.0e-06 57.8 166 27.1
SEGI_36760 Sequoiadendron giganteum HOM05D002537 ORTHO05D002751 3.9e-06 57.4 109 32.1
Zm00001eb217780 Zea mays HOM05D003725 ORTHO05D004294 3.9e-06 57.4 115 28.7
Oeu013658.5 Olea europaea HOM05D002537 ORTHO05D002751 5.1e-06 57.0 115 29.6
SEGI_31691 Sequoiadendron giganteum HOM05D002537 ORTHO05D004294 5.1e-06 57.0 109 31.2
Lj6A725G109 Lonicera japonica HOM05D003725 ORTHO05D004294 6.7e-06 56.6 88 34.1
Pp3c17_6370 Physcomitrium patens HOM05D003725 ORTHO05D004294 6.7e-06 56.6 78 34.6
SMO367G0451 Selaginella moellendorffii HOM05D003725 ORTHO05D004294 6.7e-06 56.6 180 27.2


User provided reference genes

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