Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0304181 Rosa chinensis HOM05D005066 ORTHO05D006138 2.0e-208 728.8 351 100.0
FvH4_2g37550 Fragaria vesca HOM05D005066 ORTHO05D006138 1.2e-200 703.0 351 96.6
FAN15G0307 Fragaria x ananassa HOM05D005066 ORTHO05D006138 2.2e-199 698.7 351 95.7
FAN20G0881 Fragaria x ananassa HOM05D005066 ORTHO05D006138 3.8e-199 698.0 351 95.7
Prupe.1G355000 Prunus persica HOM05D005066 ORTHO05D006138 1.3e-188 662.9 352 89.2
FAN27G0843 Fragaria x ananassa HOM05D005066 ORTHO05D006138 8.7e-188 660.2 357 89.9
MD15G1002700 Malus domestica HOM05D005066 ORTHO05D006138 3.8e-183 644.8 352 87.2
MD08G1003000 Malus domestica HOM05D005066 ORTHO05D006138 3.4e-176 621.7 352 84.7
Cfa014063 Carpinus fangiana HOM05D005066 ORTHO05D006138 1.7e-175 619.4 352 82.1
Duzib093G2109 Durio zibethinus HOM05D005066 ORTHO05D006138 1.1e-174 616.7 352 80.7
CiPaw.07G139500 Carya illinoinensis HOM05D005066 ORTHO05D006138 1.2e-173 613.2 352 81.0
TWI36G1160 Tripterygium wilfordii HOM05D005066 ORTHO05D006138 6.7e-172 607.4 353 80.7
Actinidia37971 Actinidia chinensis HOM05D005066 ORTHO05D006138 8.8e-172 607.1 352 81.0
Thecc.08G057800 Theobroma cacao HOM05D005066 ORTHO05D006138 8.8e-172 607.1 352 79.5
CSS0029951 Camellia sinensis var. sinensis HOM05D005066 ORTHO05D006138 2.0e-171 605.9 352 80.7
Gohir.A05G254700 Gossypium hirsutum HOM05D005066 ORTHO05D006138 2.0e-171 605.9 352 79.5
Lalb_Chr23g0265821 Lupinus albus HOM05D005066 ORTHO05D006138 3.3e-171 605.1 352 80.1
Manes.18G005800 Manihot esculenta HOM05D005066 ORTHO05D006138 4.4e-171 604.7 351 80.6
Potri.005G249800 Populus trichocarpa HOM05D005066 ORTHO05D006138 7.4e-171 604.0 352 79.5
CANSAT25G3513 Cannabis sativa HOM05D005066 ORTHO05D006138 9.7e-171 603.6 353 79.9
Cpa.g.sc26.207 Carica papaya HOM05D005066 ORTHO05D006138 1.3e-170 603.2 352 79.3
AT1G20540 Arabidopsis thaliana HOM05D005066 ORTHO05D006138 4.8e-170 601.3 350 78.6
GSVIVG01008680001 Vitis vinifera HOM05D005066 ORTHO05D006138 4.8e-170 601.3 352 79.8
Hma1.2p1_0507F.1_g168410 Hydrangea macrophylla HOM05D005066 ORTHO05D006138 1.1e-169 600.1 350 79.1
Eucgr.F03549 Eucalyptus grandis HOM05D005066 ORTHO05D006138 1.4e-169 599.7 352 76.7
THA.LOC104813757 Tarenaya hassleriana HOM05D005066 ORTHO05D006138 1.8e-169 599.4 352 78.7
AL1G33470 Arabidopsis lyrata HOM05D005066 ORTHO05D006138 2.4e-169 599.0 350 78.3
Dinv31933 Davidia involucrata HOM05D005066 ORTHO05D006138 5.3e-169 597.8 339 82.0
Ca_15439_v3 Cicer arietinum L. HOM05D005066 ORTHO05D006138 7.0e-169 597.4 352 79.0
Ciclev10001617m.g Citrus clementina HOM05D005066 ORTHO05D006138 1.0e-167 593.6 361 77.6
TPR.G38213 Trifolium pratense HOM05D005066 ORTHO05D006138 2.2e-167 592.4 352 78.7
VMungo1309G2329 Vigna mungo HOM05D005066 ORTHO05D006138 3.8e-167 591.7 352 78.4
Thhalv10008062m.g Eutrema salsugineum HOM05D005066 ORTHO05D006138 5.0e-167 591.3 350 77.4
Aa31LG7G4800 Aethionema arabicum HOM05D005066 ORTHO05D006138 1.1e-166 590.1 351 77.5
Carub.0001s2001 Capsella rubella HOM05D005066 ORTHO05D006138 1.1e-166 590.1 350 76.9
Lj1g0027661 Lotus japonicus HOM05D005066 ORTHO05D006138 1.9e-166 589.3 352 78.4
MSTRG.27774 Avicennia marina HOM05D005066 ORTHO05D006138 3.2e-166 588.6 350 75.4
A06p16540 Brassica napus HOM05D005066 ORTHO05D006138 4.2e-166 588.2 350 77.4
BraA06t24760Z Brassica rapa HOM05D005066 ORTHO05D006138 4.2e-166 588.2 350 77.4
Cc10_g00720 Coffea canephora HOM05D005066 ORTHO05D006138 5.5e-166 587.8 352 76.7
Oeu011330.2 Olea europaea HOM05D005066 ORTHO05D006138 5.5e-166 587.8 352 75.9
Sp1g18250 Schrenkiella parvula HOM05D005066 ORTHO05D006138 1.2e-165 586.6 350 76.9
PGR031G0259 Punica granatum HOM05D005066 ORTHO05D006138 2.1e-165 585.9 352 76.4
CsaV3_6G031630 Cucumis sativus L. HOM05D005066 ORTHO05D006138 3.6e-165 585.1 351 78.6
Medtr3g115200 Medicago truncatula HOM05D005066 ORTHO05D006138 3.6e-165 585.1 352 77.8
BcaB07g32052 Brassica carinata HOM05D005066 ORTHO05D006138 4.7e-165 584.7 350 77.4
Gorai.009G267800 Gossypium raimondii HOM05D005066 ORTHO05D006138 8.0e-165 583.9 339 79.1
Phvul.009G010100 Phaseolus vulgaris HOM05D005066 ORTHO05D006138 1.0e-164 583.6 352 77.6
Glyma.06G018800 Glycine max HOM05D005066 ORTHO05D006138 8.8e-164 580.5 352 77.3
CANSAT54G1628 Cannabis sativa HOM05D005066 ORTHO05D006138 2.6e-163 578.9 354 77.1
Potri.002G011200 Populus trichocarpa HOM05D005066 ORTHO05D006138 9.7e-163 577.0 355 74.9
Peaxi162Scf00893g00433 Petunia axillaris HOM05D005066 ORTHO05D006138 1.3e-162 576.6 353 76.5
SGA_v2.0_scaffold108G30855 Striga asiatica HOM05D005066 ORTHO05D006138 1.7e-162 576.2 352 74.4
Migut.C00955 Erythranthe guttata HOM05D005066 ORTHO05D006138 1.4e-161 573.2 352 74.4
DCAR_013911 Daucus carota HOM05D005066 ORTHO05D006138 7.0e-161 570.9 338 78.1
arahy.Tifrunner.gnm1.ann1.B8YF15 Arachis hypogaea HOM05D005066 ORTHO05D006138 9.1e-161 570.5 339 78.2
MBI05_g05143_MAGBIO Magnolia biondii HOM05D005066 ORTHO05D006138 1.2e-160 570.1 352 74.1
arahy.Tifrunner.gnm1.ann1.76XKSK Arachis hypogaea HOM05D005066 ORTHO05D006138 2.6e-160 568.9 338 78.1
Rhsim06G0007900 Rhododendron simsii HOM05D005066 ORTHO05D006138 2.9e-159 565.5 374 72.7
Aa31LG4G6350 Aethionema arabicum HOM05D005066 ORTHO05D006138 8.5e-159 563.9 352 74.4
Thhalv10018792m.g Eutrema salsugineum HOM05D005066 ORTHO05D006138 1.1e-158 563.5 352 74.1
PGSC0003DMG400009976 Solanum tuberosum HOM05D005066 ORTHO05D006138 2.5e-158 562.4 352 74.4
Lj4C805G13 Lonicera japonica HOM05D005066 ORTHO05D006138 4.2e-158 561.6 353 73.7
Nitab4.5_0000588g0150 Nicotiana tabacum HOM05D005066 ORTHO05D006138 4.2e-158 561.6 340 75.9
PSO170G0128 Papaver somniferum HOM05D005066 ORTHO05D006138 7.2e-158 560.8 351 73.5
Solyc04g082300.2 Solanum lycopersicum HOM05D005066 ORTHO05D006138 7.2e-158 560.8 352 74.1
Sopen04g035920 Solanum pennellii HOM05D005066 ORTHO05D006138 7.2e-158 560.8 352 74.1
Sp5g31400 Schrenkiella parvula HOM05D005066 ORTHO05D006138 1.2e-157 560.1 352 73.3
BcaC08g47273 Brassica carinata HOM05D005066 ORTHO05D006138 2.1e-157 559.3 352 74.1
BolC6t40062H Brassica oleracea HOM05D005066 ORTHO05D006138 2.1e-157 559.3 352 74.1
Sed0022458 Sechium edule HOM05D005066 ORTHO05D006138 2.1e-157 559.3 351 75.8
Carub.0002s2315 Capsella rubella HOM05D005066 ORTHO05D006138 8.0e-157 557.4 352 74.4
PSO210G7270 Papaver somniferum HOM05D005066 ORTHO05D006138 1.4e-156 556.6 352 73.3
AL2G36340 Arabidopsis lyrata HOM05D005066 ORTHO05D006138 3.0e-156 555.4 352 74.1
vmacro21822 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 1.2e-155 553.5 319 80.6
COL.COLO4_03999 Corchorus olitorius HOM05D005066 ORTHO05D006138 2.0e-155 552.7 319 79.0
ECA238G2025 Erigeron canadensis HOM05D005066 ORTHO05D006138 1.3e-154 550.1 352 72.4
Lsat_1_v5_gn_2_6481 Lactuca sativa HOM05D005066 ORTHO05D006138 4.8e-154 548.1 352 73.0
Aqoxy5G01046 Aquilegia oxysepala HOM05D005066 ORTHO05D006138 6.3e-154 547.7 347 72.3
C06p50230 Brassica napus HOM05D005066 ORTHO05D006138 1.6e-152 543.1 352 72.7
HanXRQChr14g0428271 Helianthus annuus HOM05D005066 ORTHO05D006138 2.7e-152 542.3 350 72.6
BraA07t31713Z Brassica rapa HOM05D005066 ORTHO05D006138 1.0e-151 540.4 352 72.4
Nn6g31745 Nelumbo nucifera HOM05D005066 ORTHO05D006138 1.7e-151 539.7 339 73.7
A07p41830 Brassica napus HOM05D005066 ORTHO05D006138 1.5e-150 536.6 352 72.2
AT1G76260 Arabidopsis thaliana HOM05D005066 ORTHO05D006138 2.5e-150 535.8 352 72.4
Glyma.04G018500 Glycine max HOM05D005066 ORTHO05D006138 6.1e-149 531.2 319 77.7
unitig_26.g9893 Utricularia gibba HOM05D005066 ORTHO05D006138 8.0e-149 530.8 352 68.2
Sabra05G0193300 Salix brachista HOM05D005066 ORTHO05D006138 8.8e-148 527.3 383 67.4
Hund05118 Selenicereus undatus HOM05D005066 ORTHO05D006138 1.5e-147 526.6 338 74.6
AUR62043922 Chenopodium quinoa HOM05D005066 ORTHO05D006138 3.4e-147 525.4 352 72.4
CARHR069820 Cardamine hirsuta HOM05D005066 ORTHO05D006138 1.7e-146 523.1 352 70.2
SalBow7G4394 Salvia bowleyana HOM05D005066 ORTHO05D006138 7.0e-145 517.7 408 61.0
Gohir.D05G256300 Gossypium hirsutum HOM05D005066 ORTHO05D006138 4.7e-141 505.0 293 78.8
AUR62036885 Chenopodium quinoa HOM05D005066 ORTHO05D006138 8.9e-140 500.7 346 69.1
ATR0661G259 Amborella trichopoda HOM05D005066 ORTHO05D006138 2.0e-139 499.6 338 66.0
BcaC05g25960 Brassica carinata HOM05D005066 ORTHO05D006138 1.7e-138 496.5 294 77.6
C05p19110 Brassica napus HOM05D005066 ORTHO05D006138 1.7e-138 496.5 309 74.1
BolC5t30611H Brassica oleracea HOM05D005066 ORTHO05D006138 1.7e-138 496.5 309 74.1
Sc15g0004490 Simmondsia chinensis HOM05D005066 ORTHO05D006138 1.4e-137 493.4 319 71.2
Os08g0554000 Oryza sativa ssp. japonica HOM05D005066 ORTHO05D006138 3.5e-136 488.8 353 64.0
Zm00001eb039840 Zea mays HOM05D005066 ORTHO05D006138 1.5e-134 483.4 353 63.7
EL10Ac1g01978 Beta vulgaris HOM05D005066 ORTHO05D006138 3.1e-132 475.7 296 75.0
BcaC08g47124 Brassica carinata HOM05D005066 ORTHO05D006138 2.0e-131 473.0 319 70.5
Zm00001eb180420 Zea mays HOM05D005066 ORTHO05D006138 1.3e-130 470.3 353 62.0
Psat5g011560 Pisum sativum HOM05D005066 ORTHO05D006138 1.7e-130 469.9 269 79.2
BNapus_Darmor_BZH_scaffold_170p00070 Brassica napus HOM05D005066 ORTHO05D006138 7.0e-129 464.5 307 71.0
Ah.13g072510 Amaranthus hybridus HOM05D005066 ORTHO05D006138 9.5e-126 454.1 397 58.7
TAR381G1664 Trochodendron aralioides HOM05D005066 ORTHO05D006138 2.6e-123 446.0 323 66.6
MELO3C026544.2 Cucumis melo HOM05D005066 ORTHO05D006138 1.0e-119 434.1 255 78.0
CSS0013002 Camellia sinensis var. sinensis HOM05D005066 ORTHO05D006138 7.3e-118 427.9 352 61.1
QL02p013964 Quercus lobata HOM05D005066 ORTHO05D006138 3.6e-117 425.6 263 75.7
Haze_22764 Corylus avellana HOM05D005066 ORTHO05D006138 4.7e-109 398.7 223 84.8
AUR62043921 Chenopodium quinoa HOM05D005066 ORTHO05D006138 5.6e-94 348.6 201 80.6
CARHR021010 Cardamine hirsuta HOM05D005066 ORTHO05D006138 1.3e-85 320.9 203 73.4
Atru.chr13.151 Acer truncatum HOM05D005066 ORTHO05D006138 1.6e-85 320.5 180 82.8
AagrBONN_evm.TU.Sc2ySwM_362.948 Anthoceros agrestis HOM05D005066 ORTHO05D006138 1.0e-82 311.2 353 41.4
Mapoly0054s0060 Marchantia polymorpha HOM05D005066 ORTHO05D006138 2.2e-82 310.1 358 42.5
HPP92_008373 Vanilla planifolia HOM05D005066 ORTHO05D006138 2.2e-82 310.1 232 61.6
Actinidia29788 Actinidia chinensis HOM05D005066 ORTHO05D006138 3.9e-79 299.3 211 67.3
SMO118G0316 Selaginella moellendorffii HOM05D005066 ORTHO05D006138 6.9e-76 288.5 354 40.1
ClCG08G009490 Citrullus lanatus HOM05D005066 ORTHO05D006138 7.4e-70 268.5 158 76.6
SHI08001 Sapria himalayana HOM05D005066 ORTHO05D006138 1.5e-67 260.8 198 62.6
AUR62043554 Chenopodium quinoa HOM05D005066 ORTHO05D006138 4.8e-53 212.6 144 70.1
Cre02.g109400 Chlamydomonas reinhardtii HOM05D005066 ORTHO05D006138 4.8e-53 212.6 363 31.7
ClCG08G009550 Citrullus lanatus HOM05D005066 ORTHO05D006138 1.2e-51 208.0 126 77.8
ClCG00G005440 Citrullus lanatus HOM05D005066 ORTHO05D006138 2.6e-46 190.3 126 71.4
CDE02G3878 Ceratophyllum demersum HOM05D005066 ORTHO05D006138 3.7e-45 186.4 108 76.9
MBI05_g41554_MAGBIO Magnolia biondii HOM05D005066 ORTHO05D006138 1.0e-42 178.3 129 64.3
QL02p013958 Quercus lobata HOM05D005066 ORTHO05D006138 1.1e-41 174.9 87 92.0
Duzib116G0540 Durio zibethinus HOM05D005066 ORTHO05D006138 1.0e-39 168.3 225 41.3
PRCOL_00000380 Prasinoderma coloniale HOM05D005066 ORTHO05D006138 2.0e-30 137.5 339 27.4
CDE04G2988 Ceratophyllum demersum HOM05D005066 ORTHO05D006138 1.9e-25 120.9 72 69.4
Haze_22758 Corylus avellana HOM05D005066 ORTHO05D006138 1.9e-25 120.9 76 72.4
SEGI_37952 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 2.1e-24 117.5 82 58.5
CBR_g17938 Chara braunii HOM05D005066 ORTHO05D006138 2.2e-21 107.5 216 30.1
vmacro11237 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 1.1e-20 105.1 69 73.9
vmacro11236 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 4.1e-20 103.2 70 71.4
MCO04G183 Micromonas commoda HOM05D005066 ORTHO05D006138 5.0e-18 96.3 355 23.4
SEGI_07968 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 2.1e-16 90.9 63 66.7
Actinidia09068 Actinidia chinensis HOM05D005066 ORTHO05D006138 7.5e-14 82.4 54 75.9
Actinidia07458 Actinidia chinensis HOM05D005066 ORTHO05D006138 2.9e-13 80.5 44 79.5
arahy.Tifrunner.gnm1.ann1.7RQ6TB Arachis hypogaea HOM05D005066 ORTHO05D006138 1.9e-12 77.8 80 48.8
Peaxi162Scf00362g00643 Petunia axillaris HOM05D000347 ORTHO05D001997 4.1e-12 76.6 220 24.5
arahy.Tifrunner.gnm1.ann1.FBZU85 Arachis hypogaea HOM05D005066 ORTHO05D006138 2.7e-11 73.9 147 34.0
Glyma.12G033100 Glycine max HOM05D000347 ORTHO05D001997 4.6e-11 73.2 166 25.9
SGA_v2.0_scaffold275G46594 Striga asiatica HOM05D005066 ORTHO05D406259 7.8e-11 72.4 178 33.7
HPP92_001386 Vanilla planifolia HOM05D001978 ORTHO05D003036 5.0e-10 69.7 256 24.6
Cre02.g109150 Chlamydomonas reinhardtii HOM05D005066 ORTHO05D006138 6.6e-10 69.3 71 38.0
Glyma.11G091500 Glycine max HOM05D000347 ORTHO05D001997 1.5e-09 68.2 144 27.8
vmacro21824 Vaccinium macrocarpon HOM05D004614 ORTHO05D005339 3.3e-09 67.0 48 60.4
Ah.01g008430 Amaranthus hybridus HOM05D000347 ORTHO05D001997 4.3e-09 66.6 171 25.1
Solyc01g111590.4 Solanum lycopersicum HOM05D000347 ORTHO05D001997 1.6e-08 64.7 148 26.4
Nitab4.5_0000283g0360 Nicotiana tabacum HOM05D000347 ORTHO05D001997 2.1e-08 64.3 149 25.5
Nitab4.5_0003914g0030 Nicotiana tabacum HOM05D000347 ORTHO05D001997 2.8e-08 63.9 149 25.5
Sopen01g053630 Solanum pennellii HOM05D000347 ORTHO05D001997 2.8e-08 63.9 146 26.7
AagrBONN_evm.TU.Sc2ySwM_228.219 Anthoceros agrestis HOM05D002302 ORTHO05D002728 3.6e-08 63.5 157 25.5
vmacro21823 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 6.2e-08 62.8 33 81.8
Lj9A393T56 Lonicera japonica HOM05D000347 ORTHO05D001997 8.1e-08 62.4 222 22.5
PGSC0003DMG400006171 Solanum tuberosum HOM05D000347 ORTHO05D001997 1.4e-07 61.6 148 27.7
FvH4_2g01180 Fragaria vesca HOM05D000347 ORTHO05D001997 2.3e-07 60.8 149 24.8
FAN24G3508 Fragaria x ananassa HOM05D000347 ORTHO05D001997 2.3e-07 60.8 149 24.8
Os11g0660300 Oryza sativa ssp. japonica HOM05D005151 ORTHO05D006322 2.3e-07 60.8 178 24.7
Zm00001eb165440 Zea mays HOM05D005151 ORTHO05D006322 3.1e-07 60.5 178 24.2
FAN15G3271 Fragaria x ananassa HOM05D000347 ORTHO05D001997 5.2e-07 59.7 149 24.2
FAN20G0646 Fragaria x ananassa HOM05D000347 ORTHO05D001997 5.2e-07 59.7 149 24.2
DCAR_013994 Daucus carota HOM05D000347 ORTHO05D001997 6.8e-07 59.3 218 21.6
SEGI_12583 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 8.9e-07 58.9 46 56.5
Zm00001eb329590 Zea mays HOM05D001978 ORTHO05D003036 1.2e-06 58.5 214 22.4
Zm00001eb110650 Zea mays HOM05D001978 ORTHO05D003036 2.0e-06 57.8 214 22.4
FAN27G1321 Fragaria x ananassa HOM05D000347 ORTHO05D001997 4.4e-06 56.6 148 23.6
Nn4g22810 Nelumbo nucifera HOM05D005066 ORTHO05D006138 4.4e-06 56.6 41 61.0
CAN.G588.81 Capsicum annuum HOM05D000347 ORTHO05D001997 5.8e-06 56.2 151 24.5
C05p13640 Brassica napus HOM05D003006 ORTHO05D002838 7.5e-06 55.8 113 31.0
AUR62038170 Chenopodium quinoa HOM05D000030 ORTHO05D000031 7.5e-06 55.8 42 59.5


User provided reference genes

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