Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0303721 Rosa chinensis HOM05D004247 ORTHO05D004994 4.7e-83 311.2 167 100.0
FAN20G0823 Fragaria x ananassa HOM05D004247 ORTHO05D004994 2.7e-78 295.4 168 95.8
FvH4_2g37890 Fragaria vesca HOM05D004247 ORTHO05D004994 2.3e-77 292.4 168 95.2
FAN15G0804 Fragaria x ananassa HOM05D004247 ORTHO05D004994 3.9e-77 291.6 168 95.8
FAN27G2657 Fragaria x ananassa HOM05D004247 ORTHO05D004994 6.6e-77 290.8 168 95.2
CiPaw.08G069600 Carya illinoinensis HOM05D004247 ORTHO05D004994 1.1e-71 273.5 167 85.0
Haze_22717 Corylus avellana HOM05D004247 ORTHO05D004994 1.7e-69 266.2 167 82.6
Prupe.1G358900 Prunus persica HOM05D004247 ORTHO05D004994 2.3e-69 265.8 167 82.0
Cfa014015 Carpinus fangiana HOM05D004247 ORTHO05D004994 3.0e-69 265.4 167 82.6
CiPaw.07G143100 Carya illinoinensis HOM05D004247 ORTHO05D004994 8.7e-69 263.8 167 80.8
QL02p013016 Quercus lobata HOM05D004247 ORTHO05D004994 8.7e-69 263.8 168 82.1
MD15G1006300 Malus domestica HOM05D004247 ORTHO05D004994 2.8e-67 258.8 168 81.5
ClCG05G015390 Citrullus lanatus HOM05D004247 ORTHO05D004994 8.1e-67 257.3 168 81.0
MD08G1007200 Malus domestica HOM05D004247 ORTHO05D004994 1.4e-66 256.5 168 82.1
COL.COLO4_26078 Corchorus olitorius HOM05D004247 ORTHO05D004994 5.3e-66 254.6 169 81.7
Duzib116G0390 Durio zibethinus HOM05D004247 ORTHO05D004994 5.3e-66 254.6 168 81.0
TWI56G0334 Tripterygium wilfordii HOM05D004247 ORTHO05D004994 6.9e-66 254.2 168 81.0
Gorai.009G190800 Gossypium raimondii HOM05D004247 ORTHO05D004994 2.9e-64 248.8 168 78.6
Gohir.D05G185400 Gossypium hirsutum HOM05D004247 ORTHO05D004994 6.4e-64 247.7 168 78.0
arahy.Tifrunner.gnm1.ann1.X5CP5W Arachis hypogaea HOM05D004247 ORTHO05D004994 1.1e-63 246.9 171 80.1
Cpa.g.sc26.256 Carica papaya HOM05D004247 ORTHO05D004994 1.1e-63 246.9 169 77.5
Ciclev10002698m.g Citrus clementina HOM05D004247 ORTHO05D004994 1.4e-63 246.5 170 77.6
Glyma.04G020300 Glycine max HOM05D004247 ORTHO05D004994 1.4e-63 246.5 168 81.5
Lj1g0015317 Lotus japonicus HOM05D004247 ORTHO05D004994 3.2e-63 245.4 170 78.2
arahy.Tifrunner.gnm1.ann1.X4SEKR Arachis hypogaea HOM05D004247 ORTHO05D004994 7.1e-63 244.2 171 78.4
Gohir.A05G182400 Gossypium hirsutum HOM05D004247 ORTHO05D004994 7.1e-63 244.2 168 77.4
Thecc.08G052400 Theobroma cacao HOM05D004247 ORTHO05D004994 7.1e-63 244.2 169 78.1
Sc26g0004480 Simmondsia chinensis HOM05D004247 ORTHO05D004994 9.3e-63 243.8 170 75.9
MELO3C003725.2 Cucumis melo HOM05D004247 ORTHO05D004994 1.2e-62 243.4 167 77.2
Dinv31897 Davidia involucrata HOM05D004247 ORTHO05D004994 1.6e-62 243.0 162 79.0
Glyma.06G020400 Glycine max HOM05D004247 ORTHO05D004994 2.7e-62 242.3 169 79.9
Lj4C16T12 Lonicera japonica HOM05D004247 ORTHO05D004994 2.7e-62 242.3 169 74.6
Lalb_Chr03g0033581 Lupinus albus HOM05D004247 ORTHO05D004994 2.7e-62 242.3 167 75.4
PSO541G1800 Papaver somniferum HOM05D004247 ORTHO05D004994 2.7e-62 242.3 167 74.9
Phvul.009G020300 Phaseolus vulgaris HOM05D004247 ORTHO05D004994 3.5e-62 241.9 168 76.8
CsaV3_3G046150 Cucumis sativus L. HOM05D004247 ORTHO05D004994 4.6e-62 241.5 167 77.2
Peaxi162Scf00174g00103 Petunia axillaris HOM05D004247 ORTHO05D004994 4.6e-62 241.5 168 75.6
VMungo1309G1934 Vigna mungo HOM05D004247 ORTHO05D004994 4.6e-62 241.5 168 76.8
Ca_15453_v3 Cicer arietinum L. HOM05D004247 ORTHO05D004994 6.0e-62 241.1 170 77.6
Nitab4.5_0007524g0020 Nicotiana tabacum HOM05D004247 ORTHO05D004994 6.0e-62 241.1 168 76.8
TAR381G1019 Trochodendron aralioides HOM05D004247 ORTHO05D004994 6.0e-62 241.1 167 74.9
PSO675G9160 Papaver somniferum HOM05D004247 ORTHO05D004994 1.8e-61 239.6 167 73.7
Cc10_g01080 Coffea canephora HOM05D004247 ORTHO05D004994 2.3e-61 239.2 168 75.6
THA.LOC104813771 Tarenaya hassleriana HOM05D004247 ORTHO05D004994 3.9e-61 238.4 169 74.0
GSVIVG01008733001 Vitis vinifera HOM05D004247 ORTHO05D004994 5.1e-61 238.0 169 74.6
Potri.005G246100 Populus trichocarpa HOM05D004247 ORTHO05D004994 6.7e-61 237.7 169 75.1
MBI05_g34744_MAGBIO Magnolia biondii HOM05D004247 ORTHO05D004994 1.5e-60 236.5 168 75.0
Lalb_Chr19g0131621 Lupinus albus HOM05D004247 ORTHO05D004994 2.5e-60 235.7 167 72.5
MBI08_g05719_MAGBIO Magnolia biondii HOM05D004247 ORTHO05D004994 3.3e-60 235.3 163 77.3
Sabra05G0190200 Salix brachista HOM05D004247 ORTHO05D004994 7.4e-60 234.2 169 72.8
CANSAT25G3567 Cannabis sativa HOM05D004247 ORTHO05D004994 1.3e-59 233.4 172 76.2
Nitab4.5_0003030g0010 Nicotiana tabacum HOM05D004247 ORTHO05D004994 1.3e-59 233.4 170 72.9
Actinidia37957 Actinidia chinensis HOM05D004247 ORTHO05D004994 3.7e-59 231.9 168 75.0
Migut.N03188 Erythranthe guttata HOM05D004247 ORTHO05D004994 3.7e-59 231.9 170 70.0
Nitab4.5_0001936g0030 Nicotiana tabacum HOM05D004247 ORTHO05D004994 6.2e-59 231.1 168 72.6
Ah.04g150590 Amaranthus hybridus HOM05D004247 ORTHO05D004994 1.8e-58 229.6 171 74.3
Manes.05G142000 Manihot esculenta HOM05D004247 ORTHO05D004994 1.8e-58 229.6 170 71.2
Hma1.2p1_2322F.1_g319850 Hydrangea macrophylla HOM05D004247 ORTHO05D004994 2.4e-58 229.2 169 71.0
Hma1.2p1_3012F.1_g331630 Hydrangea macrophylla HOM05D004247 ORTHO05D004994 2.4e-58 229.2 169 71.0
Aqoxy6G01936 Aquilegia oxysepala HOM05D004247 ORTHO05D004994 3.1e-58 228.8 168 73.2
Lalb_Chr01g0008481 Lupinus albus HOM05D004247 ORTHO05D004994 5.3e-58 228.0 169 71.6
CAN.G311.79 Capsicum annuum HOM05D004247 ORTHO05D004994 6.9e-58 227.6 167 73.7
Medtr3g114850 Medicago truncatula HOM05D004247 ORTHO05D004994 6.9e-58 227.6 170 72.9
TAR625G1162 Trochodendron aralioides HOM05D004247 ORTHO05D004994 6.9e-58 227.6 167 68.9
Lj4P802T100 Lonicera japonica HOM05D004247 ORTHO05D004994 9.0e-58 227.3 167 70.1
Lsat_1_v5_gn_8_28601 Lactuca sativa HOM05D004247 ORTHO05D004994 1.2e-57 226.9 168 70.2
Potri.002G016000 Populus trichocarpa HOM05D004247 ORTHO05D004994 1.2e-57 226.9 169 71.0
CARHR020810 Cardamine hirsuta HOM05D004247 ORTHO05D004994 1.5e-57 226.5 169 71.0
Sabra02G0012900 Salix brachista HOM05D004247 ORTHO05D004994 2.0e-57 226.1 167 69.5
TPR.G38114 Trifolium pratense HOM05D004247 ORTHO05D004994 2.6e-57 225.7 168 70.2
Psat5g011080 Pisum sativum HOM05D004247 ORTHO05D004994 4.5e-57 224.9 170 71.2
Carub.0001s1985 Capsella rubella HOM05D004247 ORTHO05D004994 5.8e-57 224.6 170 71.2
Thhalv10008749m.g Eutrema salsugineum HOM05D004247 ORTHO05D004994 5.8e-57 224.6 168 70.2
Hma1.2p1_0023F.1_g015810 Hydrangea macrophylla HOM05D004247 ORTHO05D004994 5.8e-57 224.6 173 72.8
CSS0046333 Camellia sinensis var. sinensis HOM05D004247 ORTHO05D004994 9.9e-57 223.8 172 72.1
THA.LOC104809663 Tarenaya hassleriana HOM05D004247 ORTHO05D004994 9.9e-57 223.8 171 68.4
BcaB07g32038 Brassica carinata HOM05D004247 ORTHO05D004994 1.7e-56 223.0 168 70.2
A06p16430 Brassica napus HOM05D004247 ORTHO05D004994 2.2e-56 222.6 167 69.5
BraA06t24747Z Brassica rapa HOM05D004247 ORTHO05D004994 2.2e-56 222.6 167 69.5
A07p15730 Brassica napus HOM05D004247 ORTHO05D004994 3.8e-56 221.9 168 69.0
A07p15830 Brassica napus HOM05D004247 ORTHO05D004994 3.8e-56 221.9 168 69.0
BraA07t29309Z Brassica rapa HOM05D004247 ORTHO05D004994 3.8e-56 221.9 168 69.0
ECA232G0296 Erigeron canadensis HOM05D004247 ORTHO05D004994 3.8e-56 221.9 167 68.9
Sp1g18060 Schrenkiella parvula HOM05D004247 ORTHO05D004994 3.8e-56 221.9 168 69.6
Sed0002819 Sechium edule HOM05D004247 ORTHO05D004994 6.4e-56 221.1 167 70.7
AT1G20340 Arabidopsis thaliana HOM05D004247 ORTHO05D004994 8.4e-56 220.7 168 68.5
Oeu021483.1 Olea europaea HOM05D004247 ORTHO05D004994 1.1e-55 220.3 169 66.9
Rhsim07G0251400 Rhododendron simsii HOM05D004247 ORTHO05D004994 1.1e-55 220.3 169 69.2
AL1G33170 Arabidopsis lyrata HOM05D004247 ORTHO05D004994 1.4e-55 219.9 168 67.9
Lsat_1_v5_gn_0_680 Lactuca sativa HOM05D004247 ORTHO05D004994 1.4e-55 219.9 168 67.9
BolC7t42849H Brassica oleracea HOM05D004247 ORTHO05D004994 1.9e-55 219.5 168 67.9
SGA_v2.0_scaffold19G08591 Striga asiatica HOM05D004247 ORTHO05D004994 2.4e-55 219.2 164 70.1
BcaB03g12872 Brassica carinata HOM05D004247 ORTHO05D004994 3.2e-55 218.8 167 68.9
BcaNung03373 Brassica carinata HOM05D004247 ORTHO05D004994 3.2e-55 218.8 168 67.3
C07p23120 Brassica napus HOM05D004247 ORTHO05D004994 3.2e-55 218.8 168 67.3
TWI12G1003 Tripterygium wilfordii HOM05D004247 ORTHO05D004994 4.2e-55 218.4 153 75.8
C08p20070 Brassica napus HOM05D004247 ORTHO05D004994 1.2e-54 216.9 167 70.1
BcaC07g39030 Brassica carinata HOM05D004247 ORTHO05D004994 2.1e-54 216.1 167 70.1
Sed0013890 Sechium edule HOM05D004247 ORTHO05D004994 3.5e-54 215.3 167 68.9
Aa31LG7G4700 Aethionema arabicum HOM05D004247 ORTHO05D004994 4.6e-54 214.9 168 65.5
EL10Ac1g02063 Beta vulgaris HOM05D004247 ORTHO05D004994 4.6e-54 214.9 161 71.4
A08p29430 Brassica napus HOM05D004247 ORTHO05D004994 4.6e-54 214.9 167 69.5
BraA08t34878Z Brassica rapa HOM05D004247 ORTHO05D004994 4.6e-54 214.9 167 69.5
BcaC05g25945 Brassica carinata HOM05D004247 ORTHO05D004994 6.0e-54 214.5 169 68.0
C05p18970 Brassica napus HOM05D004247 ORTHO05D004994 6.0e-54 214.5 169 68.0
BolC5t30597H Brassica oleracea HOM05D004247 ORTHO05D004994 6.0e-54 214.5 169 68.0
Aqoxy6G01937 Aquilegia oxysepala HOM05D004247 ORTHO05D004994 1.3e-53 213.4 169 68.6
SalBow6G1848 Salvia bowleyana HOM05D004247 ORTHO05D004994 1.3e-53 213.4 167 66.5
CDE02G3101 Ceratophyllum demersum HOM05D004247 ORTHO05D004994 1.8e-53 213.0 163 67.5
CDE04G1887 Ceratophyllum demersum HOM05D004247 ORTHO05D004994 1.8e-53 213.0 156 71.8
Oeu051143.1 Olea europaea HOM05D004247 ORTHO05D004994 2.3e-53 212.6 168 66.7
CARHR069640 Cardamine hirsuta HOM05D004247 ORTHO05D004994 3.0e-53 212.2 172 65.7
BolC8t49642H Brassica oleracea HOM05D004247 ORTHO05D004994 5.1e-53 211.5 164 69.5
Oeu027609.1 Olea europaea HOM05D004247 ORTHO05D004994 6.7e-53 211.1 168 66.1
Aa31LG4G6220 Aethionema arabicum HOM05D004247 ORTHO05D004994 8.7e-53 210.7 168 67.3
AL2G36140 Arabidopsis lyrata HOM05D004247 ORTHO05D004994 8.7e-53 210.7 172 64.5
PGR031G2466 Punica granatum HOM05D004247 ORTHO05D004994 8.7e-53 210.7 170 67.6
Rhsim06G0011800 Rhododendron simsii HOM05D004247 ORTHO05D004994 8.7e-53 210.7 166 65.1
ECA233G0125 Erigeron canadensis HOM05D004247 ORTHO05D004994 1.1e-52 210.3 162 67.3
Thhalv10019237m.g Eutrema salsugineum HOM05D004247 ORTHO05D004994 1.5e-52 209.9 168 67.3
BraA07t31695Z Brassica rapa HOM05D004247 ORTHO05D004994 2.5e-52 209.1 171 66.1
HanXRQChr05g0146621 Helianthus annuus HOM05D004247 ORTHO05D004994 2.5e-52 209.1 167 65.9
Sp5g31220 Schrenkiella parvula HOM05D004247 ORTHO05D004994 2.5e-52 209.1 170 65.3
AT1G76100 Arabidopsis thaliana HOM05D004247 ORTHO05D004994 3.3e-52 208.8 172 66.3
A07p41660 Brassica napus HOM05D004247 ORTHO05D004994 7.4e-52 207.6 171 66.1
C06p50040 Brassica napus HOM05D004247 ORTHO05D004994 9.6e-52 207.2 171 66.1
ECA232G3771 Erigeron canadensis HOM05D004247 ORTHO05D004994 9.6e-52 207.2 167 64.7
ATR0661G060 Amborella trichopoda HOM05D004247 ORTHO05D004994 1.6e-51 206.5 169 66.3
BcaC08g47292 Brassica carinata HOM05D004247 ORTHO05D004994 2.1e-51 206.1 171 65.5
BolC6t40043H Brassica oleracea HOM05D004247 ORTHO05D004994 2.1e-51 206.1 171 65.5
BcaC08g47103 Brassica carinata HOM05D004247 ORTHO05D004994 4.8e-51 204.9 170 64.7
Solyc04g082010.1 Solanum lycopersicum HOM05D004247 ORTHO05D004994 1.8e-50 203.0 172 66.9
Sopen04g035660 Solanum pennellii HOM05D004247 ORTHO05D004994 1.8e-50 203.0 172 66.9
DCAR_013894 Daucus carota HOM05D004247 ORTHO05D004994 5.3e-50 201.4 168 65.5
PGSC0003DMG400041620 Solanum tuberosum HOM05D004247 ORTHO05D004994 2.9e-48 195.7 172 64.5
Migut.C00904 Erythranthe guttata HOM05D004247 ORTHO05D004994 8.4e-48 194.1 169 63.9
Nn6g31900 Nelumbo nucifera HOM05D004247 ORTHO05D004994 3.2e-47 192.2 144 71.5
unitig_899.g15551 Utricularia gibba HOM05D004247 ORTHO05D004994 1.2e-46 190.3 170 60.6
AUR62036731 Chenopodium quinoa HOM05D004247 ORTHO05D004994 5.1e-45 184.9 102 83.3
AUR62013862 Chenopodium quinoa HOM05D004247 ORTHO05D004994 1.6e-43 179.9 102 80.4
Dinv39560 Davidia involucrata HOM05D004247 ORTHO05D004994 2.8e-43 179.1 101 82.2
TPR.G8442 Trifolium pratense HOM05D004247 ORTHO05D004994 1.5e-41 173.3 100 81.0
SEGI_02730 Sequoiadendron giganteum HOM05D004247 ORTHO05D004994 1.3e-40 170.2 163 59.5
Zm00001eb268360 Zea mays HOM05D004247 ORTHO05D004994 2.2e-40 169.5 170 58.2
Zm00001eb379570 Zea mays HOM05D004247 ORTHO05D004994 2.1e-38 162.9 168 54.8
Os06g0101600 Oryza sativa ssp. japonica HOM05D004247 ORTHO05D004994 8.8e-37 157.5 167 55.1
Sc02g0008920 Simmondsia chinensis HOM05D004247 ORTHO05D004994 1.1e-36 157.1 141 61.7
HPP92_015000 Vanilla planifolia HOM05D004247 ORTHO05D004994 2.2e-35 152.9 209 45.5
Pp3c19_21160 Physcomitrium patens HOM05D004247 ORTHO05D004994 1.8e-34 149.8 171 50.3
SMO351G0102 Selaginella moellendorffii HOM05D004247 ORTHO05D004994 1.7e-32 143.3 174 46.6
Pp3c21_4230 Physcomitrium patens HOM05D004247 ORTHO05D004994 3.8e-32 142.1 167 48.5
AagrBONN_evm.TU.Sc2ySwM_228.703 Anthoceros agrestis HOM05D004247 ORTHO05D004994 4.7e-30 135.2 174 45.4
CBR_g18572 Chara braunii HOM05D004247 ORTHO05D004994 3.0e-29 132.5 171 48.0
PRCOL_00002380 Prasinoderma coloniale HOM05D004247 ORTHO05D004994 1.1e-28 130.6 139 52.5
Pp3c18_13090 Physcomitrium patens HOM05D004247 ORTHO05D004994 2.0e-28 129.8 170 42.9
Atru.chr13.210 Acer truncatum HOM05D004247 ORTHO05D004994 7.4e-28 127.9 176 51.1
Nitab4.5_0006806g0080 Nicotiana tabacum HOM05D004247 ORTHO05D004994 6.3e-27 124.8 70 82.9
Cre03.g182551 Chlamydomonas reinhardtii HOM05D004247 ORTHO05D004994 1.1e-26 124.0 144 49.3
Nitab4.5_0001476g0060 Nicotiana tabacum HOM05D004247 ORTHO05D004994 3.1e-26 122.5 70 80.0
Mapoly0080s0027 Marchantia polymorpha HOM05D004247 ORTHO05D004994 2.0e-25 119.8 168 44.0
MCO15G475 Micromonas commoda HOM05D004247 ORTHO05D004994 1.1e-23 114.0 117 49.6
Nitab4.5_0002353g0080 Nicotiana tabacum HOM05D004247 ORTHO05D004994 2.8e-19 99.4 67 71.6
Nitab4.5_0000498g0120 Nicotiana tabacum HOM05D004247 ORTHO05D004994 7.0e-18 94.7 81 60.5
Cc01_g01320 Coffea canephora HOM05D004247 ORTHO05D004994 6.5e-16 88.2 44 90.9
Cc01_g01310 Coffea canephora HOM05D004247 ORTHO05D004994 1.8e-10 70.1 68 66.2


User provided reference genes

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