Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0302371 Rosa chinensis HOM05D005790 ORTHO05D007464 3.0e-83 312.0 180 100.0
RcHm_v2.0_Chr6g0272131 Rosa chinensis HOM05D005790 ORTHO05D007464 1.8e-48 196.4 180 62.8
FvH4_2g39120 Fragaria vesca HOM05D005790 ORTHO05D007464 4.5e-47 191.8 180 60.0
FAN15G2431 Fragaria x ananassa HOM05D005790 ORTHO05D007464 1.0e-46 190.7 180 59.4
MD15G1016100 Malus domestica HOM05D005790 ORTHO05D007464 3.2e-45 185.7 180 58.3
MD08G1017100 Malus domestica HOM05D005790 ORTHO05D007464 4.2e-45 185.3 180 58.3
Prupe.1G369900 Prunus persica HOM05D005790 ORTHO05D007464 1.2e-44 183.7 180 57.2
FAN20G0385 Fragaria x ananassa HOM05D005790 ORTHO05D007464 1.6e-44 183.3 176 58.5
FAN20G1847 Fragaria x ananassa HOM05D005790 ORTHO05D007464 1.6e-44 183.3 176 58.5
Lalb_Chr08g0246071 Lupinus albus HOM05D005790 ORTHO05D007464 1.8e-43 179.9 178 55.1
COL.COLO4_26188 Corchorus olitorius HOM05D005790 ORTHO05D007464 3.0e-43 179.1 180 55.0
arahy.Tifrunner.gnm1.ann1.BXK9RQ Arachis hypogaea HOM05D005790 ORTHO05D007464 3.3e-42 175.6 208 50.5
Lj1g0012079 Lotus japonicus HOM05D005790 ORTHO05D007464 7.5e-42 174.5 178 54.5
Manes.13G125500 Manihot esculenta HOM05D005790 ORTHO05D007464 7.5e-42 174.5 180 55.6
Ca_02056_v3 Cicer arietinum L. HOM05D005790 ORTHO05D007464 1.7e-41 173.3 180 52.2
Gohir.A06G005800 Gossypium hirsutum HOM05D005790 ORTHO05D007464 1.7e-41 173.3 180 53.9
Glyma.06G026400 Glycine max HOM05D005790 ORTHO05D007464 3.7e-41 172.2 206 49.0
Gorai.010G006000 Gossypium raimondii HOM05D005790 ORTHO05D007464 4.8e-41 171.8 180 53.9
Potri.009G002100 Populus trichocarpa HOM05D005790 ORTHO05D007464 4.8e-41 171.8 180 52.8
Gohir.D06G001600 Gossypium hirsutum HOM05D005790 ORTHO05D007464 8.2e-41 171.0 180 53.9
arahy.Tifrunner.gnm1.ann1.S6ZM1I Arachis hypogaea HOM05D005790 ORTHO05D007464 1.1e-40 170.6 208 49.5
Phvul.009G014700 Phaseolus vulgaris HOM05D005790 ORTHO05D007464 1.4e-40 170.2 178 53.4
VMungo1309G1814 Vigna mungo HOM05D005790 ORTHO05D007464 1.4e-40 170.2 178 53.4
CANSAT01G0079 Cannabis sativa HOM05D005790 ORTHO05D007464 2.4e-40 169.5 178 55.1
Medtr3g113190 Medicago truncatula HOM05D005790 ORTHO05D007464 3.1e-40 169.1 180 52.8
TPR.G30295 Trifolium pratense HOM05D005790 ORTHO05D007464 4.1e-40 168.7 180 52.2
PGR031G1208 Punica granatum HOM05D005790 ORTHO05D007464 2.0e-39 166.4 180 51.7
CSS0048998 Camellia sinensis var. sinensis HOM05D005790 ORTHO05D007464 4.5e-39 165.2 177 52.0
CSS0050056 Camellia sinensis var. sinensis HOM05D005790 ORTHO05D007464 4.5e-39 165.2 177 52.0
Cfa013914 Carpinus fangiana HOM05D005790 ORTHO05D007464 4.5e-39 165.2 180 52.2
Psat5g014760 Pisum sativum HOM05D005790 ORTHO05D007464 7.7e-39 164.5 178 50.6
Atru.chr13.345 Acer truncatum HOM05D005790 ORTHO05D007464 1.0e-38 164.1 180 51.7
Dinv31817 Davidia involucrata HOM05D005790 ORTHO05D007464 1.3e-38 163.7 179 51.4
Sed0009865 Sechium edule HOM05D005790 ORTHO05D007464 1.7e-38 163.3 180 50.6
Atru.BG.234.p Acer truncatum HOM05D005790 ORTHO05D007464 5.0e-38 161.8 178 51.1
Actinidia37976 Actinidia chinensis HOM05D005790 ORTHO05D007464 5.0e-38 161.8 179 51.4
Haze_22599 Corylus avellana HOM05D005790 ORTHO05D007464 6.5e-38 161.4 180 52.2
GSVIVG01009836001 Vitis vinifera HOM05D005790 ORTHO05D007464 8.5e-38 161.0 177 48.6
CiPaw.07G153400 Carya illinoinensis HOM05D005790 ORTHO05D007464 3.2e-37 159.1 180 51.7
Ciclev10008674m.g Citrus clementina HOM05D005790 ORTHO05D007464 5.5e-37 158.3 180 50.6
Peaxi162Scf00085g00528 Petunia axillaris HOM05D005790 ORTHO05D007464 5.5e-37 158.3 180 48.3
CARHR237760 Cardamine hirsuta HOM05D005790 ORTHO05D007464 7.2e-37 157.9 178 50.0
TAR381G1687 Trochodendron aralioides HOM05D005790 ORTHO05D007464 7.2e-37 157.9 179 49.2
Solyc11g010910.3 Solanum lycopersicum HOM05D005790 ORTHO05D007464 1.2e-36 157.1 180 49.4
Sopen11g005650 Solanum pennellii HOM05D005790 ORTHO05D007464 1.2e-36 157.1 180 49.4
PGSC0003DMG400016117 Solanum tuberosum HOM05D005790 ORTHO05D007464 1.2e-36 157.1 180 49.4
vmacro21704 Vaccinium macrocarpon HOM05D005790 ORTHO05D007464 1.2e-36 157.1 179 49.2
Cc10_g02010 Coffea canephora HOM05D005790 ORTHO05D007464 1.6e-36 156.8 179 49.7
Eucgr.J01034 Eucalyptus grandis HOM05D005790 ORTHO05D007464 1.6e-36 156.8 180 51.1
TWI36G0257 Tripterygium wilfordii HOM05D005790 ORTHO05D007464 1.6e-36 156.8 180 50.0
MELO3C024652.2 Cucumis melo HOM05D005790 ORTHO05D007464 2.1e-36 156.4 208 44.7
CsaV3_1G045470 Cucumis sativus L. HOM05D005790 ORTHO05D007464 2.7e-36 156.0 208 45.2
CsaV3_UNG233270 Cucumis sativus L. HOM05D005790 ORTHO05D007464 2.7e-36 156.0 208 45.2
Lj4A790T66 Lonicera japonica HOM05D005790 ORTHO05D007464 4.7e-36 155.2 179 47.5
Migut.D00577 Erythranthe guttata HOM05D005790 ORTHO05D007464 8.0e-36 154.5 179 48.6
PSO675G3524 Papaver somniferum HOM05D005790 ORTHO05D007464 8.0e-36 154.5 179 48.6
MSTRG.18414 Avicennia marina HOM05D005790 ORTHO05D007464 1.0e-35 154.1 180 47.2
Hund17229 Selenicereus undatus HOM05D005790 ORTHO05D007464 1.0e-35 154.1 178 46.6
AL7G22390 Arabidopsis lyrata HOM05D005790 ORTHO05D007464 2.3e-35 152.9 177 49.7
PSO541G0736 Papaver somniferum HOM05D005790 ORTHO05D007464 4.0e-35 152.1 178 48.3
Sp7g27670 Schrenkiella parvula HOM05D005790 ORTHO05D007464 4.0e-35 152.1 177 48.0
Aa31LG4G5850 Aethionema arabicum HOM05D005790 ORTHO05D007464 6.8e-35 151.4 177 47.5
Thhalv10025433m.g Eutrema salsugineum HOM05D005790 ORTHO05D007464 8.8e-35 151.0 177 48.0
BraA01t00778Z Brassica rapa HOM05D005790 ORTHO05D007464 1.2e-34 150.6 177 49.2
AT4G29860 Arabidopsis thaliana HOM05D005790 ORTHO05D007464 1.5e-34 150.2 177 49.2
ECA247G0379 Erigeron canadensis HOM05D005790 ORTHO05D007464 3.4e-34 149.1 179 44.7
Thecc.08G038500 Theobroma cacao HOM05D005790 ORTHO05D007464 4.4e-34 148.7 180 48.9
Carub.0004s1477 Capsella rubella HOM05D005790 ORTHO05D007464 7.5e-34 147.9 177 48.6
C01p09340 Brassica napus HOM05D005790 ORTHO05D007464 9.8e-34 147.5 177 47.5
BolC1t00922H Brassica oleracea HOM05D005790 ORTHO05D007464 9.8e-34 147.5 177 47.5
AUR62014415 Chenopodium quinoa HOM05D005790 ORTHO05D007464 2.2e-33 146.4 178 45.5
A01p08300 Brassica napus HOM05D005790 ORTHO05D007464 3.7e-33 145.6 177 48.0
SalBow1G3128 Salvia bowleyana HOM05D005790 ORTHO05D007464 4.8e-33 145.2 180 46.1
ClCG05G018560 Citrullus lanatus HOM05D005790 ORTHO05D007464 6.3e-33 144.8 235 40.0
HanXRQChr02g0043921 Helianthus annuus HOM05D005790 ORTHO05D007464 6.3e-33 144.8 178 44.9
Lsat_1_v5_gn_1_16241 Lactuca sativa HOM05D005790 ORTHO05D007464 8.3e-33 144.4 180 46.7
DCAR_017500 Daucus carota HOM05D005790 ORTHO05D007464 1.4e-32 143.7 179 46.9
EL10Ac1g00445 Beta vulgaris HOM05D005790 ORTHO05D007464 3.1e-32 142.5 178 43.3
Aqoxy2G03135 Aquilegia oxysepala HOM05D005790 ORTHO05D007464 4.1e-32 142.1 180 46.1
AUR62019151 Chenopodium quinoa HOM05D005790 ORTHO05D007464 4.1e-32 142.1 178 44.9
CDE05G1328 Ceratophyllum demersum HOM05D005790 ORTHO05D007464 7.0e-32 141.4 178 44.4
Nitab4.5_0000402g0130 Nicotiana tabacum HOM05D005790 ORTHO05D007464 9.1e-32 141.0 120 61.7
Zm00001eb378230 Zea mays HOM05D005790 ORTHO05D007464 9.1e-32 141.0 178 42.7
ATR0945G002 Amborella trichopoda HOM05D005790 ORTHO05D007464 1.2e-31 140.6 177 45.8
Rhsim06G0026000 Rhododendron simsii HOM05D005790 ORTHO05D007464 1.6e-31 140.2 250 37.2
Sc02g0005160 Simmondsia chinensis HOM05D005790 ORTHO05D007464 3.5e-31 139.0 175 46.3
Os06g0131100 Oryza sativa ssp. japonica HOM05D005790 ORTHO05D007464 1.3e-30 137.1 179 42.5
SGA_v2.0_scaffold8G04609 Striga asiatica HOM05D005790 ORTHO05D007464 1.7e-30 136.7 180 41.1
FAN27G0896 Fragaria x ananassa HOM05D005790 ORTHO05D007464 2.3e-30 136.3 168 50.0
QL02p010842 Quercus lobata HOM05D005790 ORTHO05D007464 1.9e-29 133.3 274 35.8
SHI02412 Sapria himalayana HOM05D005790 ORTHO05D007464 1.9e-29 133.3 176 42.0
unitig_26.g10135 Utricularia gibba HOM05D005790 ORTHO05D007464 8.0e-28 127.9 177 40.7
Oeu061776.2 Olea europaea HOM05D005790 ORTHO05D000708 4.0e-27 125.6 228 36.0
Duzib093G0196 Durio zibethinus HOM05D005790 ORTHO05D007464 6.8e-27 124.8 147 49.0
Gorai.010G006300 Gossypium raimondii HOM05D005790 ORTHO05D007464 1.2e-23 114.0 146 47.3
THA.LOC104811397 Tarenaya hassleriana HOM05D005790 ORTHO05D007464 9.5e-21 104.4 147 43.5
Sabra09G0000400 Salix brachista HOM05D005790 ORTHO05D007464 3.6e-20 102.4 149 43.0
Actinidia29793 Actinidia chinensis HOM05D005790 ORTHO05D007464 6.1e-20 101.7 91 58.2
Nn5g29250 Nelumbo nucifera HOM05D005790 ORTHO05D007464 4.0e-19 99.0 146 40.4
MBI09_g08426_MAGBIO Magnolia biondii HOM05D005790 ORTHO05D007464 1.3e-17 94.0 89 53.9
RcHm_v2.0_Chr4g0408871 Rosa chinensis HOM05D005790 ORTHO05D007464 3.0e-14 82.8 143 41.3
Mapoly0014s0217 Marchantia polymorpha HOM05D005790 ORTHO05D007464 3.9e-14 82.4 118 36.4
SMO147G0253 Selaginella moellendorffii HOM05D005790 ORTHO05D007464 3.9e-14 82.4 118 39.0
Aqoxy4G01228 Aquilegia oxysepala HOM05D005790 ORTHO05D007464 5.0e-14 82.0 118 39.8
RcHm_v2.0_Chr6g0302301 Rosa chinensis HOM05D005790 ORTHO05D007464 5.0e-14 82.0 90 52.2
TWI36G0035 Tripterygium wilfordii HOM05D005790 ORTHO05D007464 5.0e-14 82.0 118 41.5
CBR_g7976 Chara braunii HOM05D001993 ORTHO05D004040 1.2e-12 77.4 120 35.8
HPP92_020940 Vanilla planifolia HOM05D005790 ORTHO05D007464 2.8e-12 76.3 49 71.4
CBR_g24442 Chara braunii HOM05D005790 ORTHO05D007464 4.7e-12 75.5 120 35.0
Ah.05g171860 Amaranthus hybridus HOM05D005790 ORTHO05D007464 1.1e-11 74.3 118 34.7
RcHm_v2.0_Chr6g0302231 Rosa chinensis HOM05D005790 ORTHO05D007464 4.1e-08 62.4 80 45.0
Pp3c20_12860 Physcomitrium patens HOM05D005790 ORTHO05D007464 5.4e-08 62.0 117 37.6


User provided reference genes

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