Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0302231 Rosa chinensis HOM05D005790 ORTHO05D007464 3.4e-132 474.9 228 100.0
RcHm_v2.0_Chr6g0272131 Rosa chinensis HOM05D005790 ORTHO05D007464 1.7e-99 366.3 266 71.8
FvH4_2g39120 Fragaria vesca HOM05D005790 ORTHO05D007464 2.2e-91 339.3 266 66.9
FAN20G0385 Fragaria x ananassa HOM05D005790 ORTHO05D007464 1.6e-89 333.2 276 64.1
FAN20G1847 Fragaria x ananassa HOM05D005790 ORTHO05D007464 3.7e-86 322.0 305 58.0
FAN15G2431 Fragaria x ananassa HOM05D005790 ORTHO05D007464 4.8e-86 321.6 305 58.0
Prupe.1G369900 Prunus persica HOM05D005790 ORTHO05D007464 2.5e-82 309.3 269 61.0
MD15G1016100 Malus domestica HOM05D005790 ORTHO05D007464 1.8e-77 293.1 252 60.3
FAN27G0896 Fragaria x ananassa HOM05D005790 ORTHO05D007464 1.4e-74 283.5 290 54.1
MD08G1017100 Malus domestica HOM05D005790 ORTHO05D007464 1.9e-74 283.1 280 54.6
CANSAT01G0079 Cannabis sativa HOM05D005790 ORTHO05D007464 1.1e-71 273.9 248 58.5
Dinv31817 Davidia involucrata HOM05D005790 ORTHO05D007464 2.8e-70 269.2 254 54.7
Cfa013914 Carpinus fangiana HOM05D005790 ORTHO05D007464 3.1e-69 265.8 254 54.7
GSVIVG01009836001 Vitis vinifera HOM05D005790 ORTHO05D007464 5.3e-69 265.0 250 53.2
Duzib093G0196 Durio zibethinus HOM05D005790 ORTHO05D007464 1.2e-68 263.8 251 55.8
CSS0050056 Camellia sinensis var. sinensis HOM05D005790 ORTHO05D007464 1.5e-68 263.5 254 55.5
CSS0048998 Camellia sinensis var. sinensis HOM05D005790 ORTHO05D007464 3.4e-68 262.3 254 55.1
Actinidia37976 Actinidia chinensis HOM05D005790 ORTHO05D007464 4.5e-68 261.9 253 54.9
CiPaw.07G153400 Carya illinoinensis HOM05D005790 ORTHO05D007464 2.5e-66 256.1 256 55.9
COL.COLO4_26188 Corchorus olitorius HOM05D005790 ORTHO05D007464 2.5e-66 256.1 269 52.0
QL02p010842 Quercus lobata HOM05D005790 ORTHO05D007464 1.6e-65 253.4 254 53.1
Rhsim06G0026000 Rhododendron simsii HOM05D005790 ORTHO05D007464 6.1e-65 251.5 266 51.9
Gohir.A06G005800 Gossypium hirsutum HOM05D005790 ORTHO05D007464 1.0e-64 250.8 251 53.0
Gorai.010G006000 Gossypium raimondii HOM05D005790 ORTHO05D007464 1.0e-64 250.8 251 53.0
ClCG05G018560 Citrullus lanatus HOM05D005790 ORTHO05D007464 2.3e-64 249.6 250 52.8
Sed0009865 Sechium edule HOM05D005790 ORTHO05D007464 3.0e-64 249.2 249 52.6
Potri.009G002100 Populus trichocarpa HOM05D005790 ORTHO05D007464 5.1e-64 248.4 253 52.6
Gohir.D06G001600 Gossypium hirsutum HOM05D005790 ORTHO05D007464 8.8e-64 247.7 251 52.2
Manes.13G125500 Manihot esculenta HOM05D005790 ORTHO05D007464 1.1e-63 247.3 268 51.1
PGR031G1208 Punica granatum HOM05D005790 ORTHO05D007464 2.0e-63 246.5 253 53.4
vmacro21704 Vaccinium macrocarpon HOM05D005790 ORTHO05D007464 4.4e-63 245.4 265 51.3
TAR381G1687 Trochodendron aralioides HOM05D005790 ORTHO05D007464 5.7e-63 245.0 287 46.7
TWI36G0257 Tripterygium wilfordii HOM05D005790 ORTHO05D007464 1.7e-62 243.4 267 51.3
CsaV3_1G045470 Cucumis sativus L. HOM05D005790 ORTHO05D007464 2.2e-62 243.0 249 51.8
MELO3C024652.2 Cucumis melo HOM05D005790 ORTHO05D007464 4.8e-62 241.9 248 52.4
Thecc.08G038500 Theobroma cacao HOM05D005790 ORTHO05D007464 1.1e-61 240.7 230 55.7
PSO541G0736 Papaver somniferum HOM05D005790 ORTHO05D007464 1.4e-61 240.4 243 53.1
PSO675G3524 Papaver somniferum HOM05D005790 ORTHO05D007464 1.4e-61 240.4 260 50.8
Ciclev10008674m.g Citrus clementina HOM05D005790 ORTHO05D007464 1.2e-60 237.3 252 50.8
Aqoxy2G03135 Aquilegia oxysepala HOM05D005790 ORTHO05D007464 3.5e-60 235.7 246 50.8
Ca_02056_v3 Cicer arietinum L. HOM05D005790 ORTHO05D007464 5.9e-60 235.0 228 51.8
Cc10_g02010 Coffea canephora HOM05D005790 ORTHO05D007464 1.7e-59 233.4 240 52.1
Sc02g0005160 Simmondsia chinensis HOM05D005790 ORTHO05D007464 2.9e-59 232.6 250 51.2
arahy.Tifrunner.gnm1.ann1.S6ZM1I Arachis hypogaea HOM05D005790 ORTHO05D007464 1.5e-58 230.3 244 50.8
Nn5g29250 Nelumbo nucifera HOM05D005790 ORTHO05D007464 3.2e-58 229.2 284 45.8
Medtr3g113190 Medicago truncatula HOM05D005790 ORTHO05D007464 5.5e-58 228.4 243 50.2
Lalb_Chr08g0246071 Lupinus albus HOM05D005790 ORTHO05D007464 9.4e-58 227.6 251 46.6
VMungo1309G1814 Vigna mungo HOM05D005790 ORTHO05D007464 9.4e-58 227.6 251 49.4
arahy.Tifrunner.gnm1.ann1.BXK9RQ Arachis hypogaea HOM05D005790 ORTHO05D007464 2.7e-57 226.1 244 50.4
CsaV3_UNG233270 Cucumis sativus L. HOM05D005790 ORTHO05D007464 2.7e-57 226.1 268 47.4
Eucgr.J01034 Eucalyptus grandis HOM05D005790 ORTHO05D007464 2.7e-57 226.1 260 47.7
BraA01t00778Z Brassica rapa HOM05D005790 ORTHO05D007464 6.1e-57 224.9 252 49.2
Phvul.009G014700 Phaseolus vulgaris HOM05D005790 ORTHO05D007464 6.1e-57 224.9 251 48.2
Sopen11g005650 Solanum pennellii HOM05D005790 ORTHO05D007464 6.1e-57 224.9 243 51.0
PGSC0003DMG400016117 Solanum tuberosum HOM05D005790 ORTHO05D007464 8.0e-57 224.6 243 49.8
Glyma.06G026400 Glycine max HOM05D005790 ORTHO05D007464 1.0e-56 224.2 253 49.0
Sp7g27670 Schrenkiella parvula HOM05D005790 ORTHO05D007464 1.0e-56 224.2 250 48.8
Solyc11g010910.3 Solanum lycopersicum HOM05D005790 ORTHO05D007464 1.0e-56 224.2 243 51.0
C01p09340 Brassica napus HOM05D005790 ORTHO05D007464 1.4e-56 223.8 252 48.4
BolC1t00922H Brassica oleracea HOM05D005790 ORTHO05D007464 1.4e-56 223.8 252 48.4
CARHR237760 Cardamine hirsuta HOM05D005790 ORTHO05D007464 1.8e-56 223.4 250 48.4
DCAR_017500 Daucus carota HOM05D005790 ORTHO05D007464 3.0e-56 222.6 246 49.6
THA.LOC104811397 Tarenaya hassleriana HOM05D005790 ORTHO05D007464 1.5e-55 220.3 276 46.0
Lj1g0012079 Lotus japonicus HOM05D005790 ORTHO05D007464 2.0e-55 219.9 253 48.6
AL7G22390 Arabidopsis lyrata HOM05D005790 ORTHO05D007464 4.4e-55 218.8 250 48.8
ECA247G0379 Erigeron canadensis HOM05D005790 ORTHO05D007464 4.4e-55 218.8 255 47.5
Lsat_1_v5_gn_1_16241 Lactuca sativa HOM05D005790 ORTHO05D007464 4.4e-55 218.8 253 47.0
AUR62019151 Chenopodium quinoa HOM05D005790 ORTHO05D007464 5.7e-55 218.4 263 46.4
AT4G29860 Arabidopsis thaliana HOM05D005790 ORTHO05D007464 7.4e-55 218.0 253 48.6
A01p08300 Brassica napus HOM05D005790 ORTHO05D007464 7.4e-55 218.0 252 48.0
Thhalv10025433m.g Eutrema salsugineum HOM05D005790 ORTHO05D007464 1.3e-54 217.2 250 46.4
SHI02412 Sapria himalayana HOM05D005790 ORTHO05D007464 1.7e-54 216.9 263 46.8
MSTRG.18414 Avicennia marina HOM05D005790 ORTHO05D007464 8.2e-54 214.5 236 47.9
Aqoxy4G01228 Aquilegia oxysepala HOM05D005790 ORTHO05D007464 1.4e-53 213.8 212 52.4
AUR62014415 Chenopodium quinoa HOM05D005790 ORTHO05D007464 2.4e-53 213.0 273 44.7
EL10Ac1g00445 Beta vulgaris HOM05D005790 ORTHO05D007464 5.3e-53 211.8 263 45.6
Carub.0004s1477 Capsella rubella HOM05D005790 ORTHO05D007464 2.0e-52 209.9 250 46.4
HanXRQChr02g0043921 Helianthus annuus HOM05D005790 ORTHO05D007464 2.0e-52 209.9 245 49.0
Atru.BG.234.p Acer truncatum HOM05D005790 ORTHO05D007464 2.6e-52 209.5 229 50.2
Peaxi162Scf00085g00528 Petunia axillaris HOM05D005790 ORTHO05D007464 1.1e-50 204.1 238 47.5
ATR0945G002 Amborella trichopoda HOM05D005790 ORTHO05D007464 2.5e-50 203.0 270 43.0
Haze_22599 Corylus avellana HOM05D005790 ORTHO05D007464 5.5e-50 201.8 364 36.5
Ah.05g171860 Amaranthus hybridus HOM05D005790 ORTHO05D007464 9.4e-50 201.1 225 47.6
Lj4A790T66 Lonicera japonica HOM05D005790 ORTHO05D007464 6.1e-49 198.4 186 54.8
Zm00001eb378230 Zea mays HOM05D005790 ORTHO05D007464 1.4e-48 197.2 263 41.1
Migut.D00577 Erythranthe guttata HOM05D005790 ORTHO05D007464 6.8e-48 194.9 216 48.1
SGA_v2.0_scaffold8G04609 Striga asiatica HOM05D005790 ORTHO05D007464 2.0e-47 193.4 217 46.5
unitig_26.g10135 Utricularia gibba HOM05D005790 ORTHO05D007464 2.8e-46 189.5 219 43.4
Sabra09G0000400 Salix brachista HOM05D005790 ORTHO05D007464 1.6e-44 183.7 395 33.4
Os06g0131100 Oryza sativa ssp. japonica HOM05D005790 ORTHO05D007464 3.8e-43 179.1 249 41.0
Pp3c20_12860 Physcomitrium patens HOM05D005790 ORTHO05D007464 1.2e-33 147.5 212 39.2
Psat5g014800 Pisum sativum HOM05D005790 ORTHO05D007464 3.6e-33 146.0 185 45.4
Atru.chr13.345 Acer truncatum HOM05D005790 ORTHO05D007464 6.1e-33 145.2 107 65.4
Nitab4.5_0000402g0120 Nicotiana tabacum HOM05D005790 ORTHO05D007464 2.6e-31 139.8 193 45.6
Mapoly0014s0217 Marchantia polymorpha HOM05D005790 ORTHO05D007464 1.7e-30 137.1 223 35.4
SMO147G0253 Selaginella moellendorffii HOM05D005790 ORTHO05D007464 3.2e-29 132.9 243 36.6
RcHm_v2.0_Chr4g0408871 Rosa chinensis HOM05D005790 ORTHO05D007464 5.4e-29 132.1 231 39.4
Aa31LG4G5850 Aethionema arabicum HOM05D005790 ORTHO05D007464 1.1e-26 124.4 194 40.2
AagrBONN_evm.TU.Sc2ySwM_369.164 Anthoceros agrestis HOM05D005790 ORTHO05D007464 3.3e-26 122.9 251 30.7
Cpa.g.sc140.27 Carica papaya HOM05D005790 ORTHO05D007464 7.3e-26 121.7 130 51.5
TPR.G30295 Trifolium pratense HOM05D005790 ORTHO05D007464 4.0e-24 115.9 66 72.7
TWI36G0035 Tripterygium wilfordii HOM05D005790 ORTHO05D007464 6.8e-24 115.2 84 65.5
Oeu061776.2 Olea europaea HOM05D005790 ORTHO05D000708 1.2e-23 114.4 188 38.8
SalBow1G3128 Salvia bowleyana HOM05D005790 ORTHO05D007464 5.8e-23 112.1 102 54.9
RcHm_v2.0_Chr6g0302301 Rosa chinensis HOM05D005790 ORTHO05D007464 1.1e-21 107.8 49 93.9
CDE05G1328 Ceratophyllum demersum HOM05D005790 ORTHO05D007464 2.4e-21 106.7 66 69.7
TPR.G30287 Trifolium pratense HOM05D005790 ORTHO05D007464 4.6e-20 102.4 84 54.8
Gorai.010G006300 Gossypium raimondii HOM05D005790 ORTHO05D007464 2.5e-18 96.7 48 83.3
SEGI_31412 Sequoiadendron giganteum HOM05D005790 ORTHO05D007464 7.3e-18 95.1 137 40.9
Psat5g014760 Pisum sativum HOM05D005790 ORTHO05D007464 8.9e-16 88.2 43 79.1
Hund17229 Selenicereus undatus HOM05D005790 ORTHO05D007464 2.9e-14 83.2 48 66.7
Aa31LG4G5860 Aethionema arabicum HOM05D005790 ORTHO05D007464 3.7e-14 82.8 64 60.9
Actinidia29793 Actinidia chinensis HOM05D005790 ORTHO05D007464 8.3e-14 81.6 154 39.6
HPP92_020941 Vanilla planifolia HOM05D005790 ORTHO05D007464 3.2e-13 79.7 107 42.1
SEGI_12232 Sequoiadendron giganteum HOM05D005790 ORTHO05D007464 4.1e-13 79.3 48 66.7
TAR625G0591 Trochodendron aralioides HOM05D000460 ORTHO05D000333 4.6e-12 75.9 63 50.8
MD15G1017900 Malus domestica HOM05D005790 ORTHO05D007464 1.7e-11 73.9 154 35.7
MD15G1018000 Malus domestica HOM05D005790 ORTHO05D007464 1.7e-11 73.9 154 35.7
MBI09_g08426_MAGBIO Magnolia biondii HOM05D005790 ORTHO05D007464 8.6e-11 71.6 155 34.2
CBR_g7976 Chara braunii HOM05D001993 ORTHO05D004040 2.5e-10 70.1 104 33.7
CDE05G1505 Ceratophyllum demersum HOM05D005790 ORTHO05D007464 1.1e-08 64.7 41 68.3
CBR_g24442 Chara braunii HOM05D005790 ORTHO05D007464 1.8e-08 63.9 113 30.1
RcHm_v2.0_Chr6g0302371 Rosa chinensis HOM05D005790 ORTHO05D007464 1.8e-08 63.9 80 45.0
VMungo0331G1008 Vigna mungo HOM05D005790 ORTHO05D007464 2.6e-07 60.1 27 85.2
COL.COLO4_38433 Corchorus olitorius HOM05D005790 ORTHO05D030850 5.8e-07 58.9 27 77.8
Hma1.2p1_1776F.1_g301940 Hydrangea macrophylla HOM05D005790 ORTHO05D007464 7.6e-07 58.5 31 80.6
Cre02.g076850 Chlamydomonas reinhardtii HOM05D005790 ORTHO05D007464 2.9e-06 56.6 242 24.4
Actinidia29794 Actinidia chinensis HOM05D005790 ORTHO05D030850 8.4e-06 55.1 31 58.1


User provided reference genes

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