Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0293811 Rosa chinensis HOM05D002899 ORTHO05D010192 5.5e-116 421.0 215 100.0
FvH4_2g25582 Fragaria vesca HOM05D002899 ORTHO05D010192 5.9e-62 241.5 217 63.6
FAN27G1849 Fragaria x ananassa HOM05D002899 ORTHO05D003850 8.0e-51 204.5 200 61.0
FAN20G0159 Fragaria x ananassa HOM05D002899 ORTHO05D010192 1.2e-30 137.5 126 64.3
MD08G1250100 Malus domestica HOM05D002899 ORTHO05D003850 2.1e-27 126.7 241 39.0
MD15G1445100 Malus domestica HOM05D002899 ORTHO05D003850 4.0e-26 122.5 238 39.1
Prupe.1G587200 Prunus persica HOM05D002899 ORTHO05D003850 8.9e-26 121.3 243 38.3
Hma1.2p1_1059F.1_g253030 Hydrangea macrophylla HOM05D002899 ORTHO05D003850 4.4e-25 119.0 275 34.5
GSVIVG01024262001 Vitis vinifera HOM05D002899 ORTHO05D003850 7.6e-25 118.2 274 35.4
Gohir.D10G191600 Gossypium hirsutum HOM05D002899 ORTHO05D003850 1.7e-24 117.1 198 38.4
Prupe.5G048700 Prunus persica HOM05D002899 ORTHO05D003850 1.7e-24 117.1 256 39.1
COL.COLO4_33467 Corchorus olitorius HOM05D002899 ORTHO05D003850 6.4e-24 115.2 270 34.4
Gorai.011G214400 Gossypium raimondii HOM05D002899 ORTHO05D003850 6.4e-24 115.2 198 38.4
RcHm_v2.0_Chr7g0218481 Rosa chinensis HOM05D002899 ORTHO05D003850 3.5e-22 109.4 260 36.2
Peaxi162Scf01026g00001 Petunia axillaris HOM05D002899 ORTHO05D003850 6.0e-22 108.6 245 34.3
FAN04G0489 Fragaria x ananassa HOM05D002899 ORTHO05D003850 2.3e-21 106.7 240 36.2
Sed0003802 Sechium edule HOM05D002899 ORTHO05D003850 3.0e-21 106.3 237 34.6
FvH4_5g27320 Fragaria vesca HOM05D002899 ORTHO05D003850 5.1e-21 105.5 239 36.0
FAN18G3509 Fragaria x ananassa HOM05D002899 ORTHO05D003850 5.1e-21 105.5 239 36.0
TAR375G0529 Trochodendron aralioides HOM05D002899 ORTHO05D003850 6.6e-21 105.1 235 34.9
Actinidia08787 Actinidia chinensis HOM05D002899 ORTHO05D003850 8.7e-21 104.8 248 33.9
FAN08G1317 Fragaria x ananassa HOM05D002899 ORTHO05D003850 8.7e-21 104.8 239 36.0
CiPaw.05G210800 Carya illinoinensis HOM05D002899 ORTHO05D003850 1.1e-20 104.4 269 33.5
Haze_00347 Corylus avellana HOM05D002899 ORTHO05D003850 1.5e-20 104.0 234 35.5
Duzib128G1532 Durio zibethinus HOM05D002899 ORTHO05D003850 1.9e-20 103.6 153 42.5
Cc05_g11170 Coffea canephora HOM05D002899 ORTHO05D003850 2.5e-20 103.2 178 38.2
Lj9C24T10 Lonicera japonica HOM05D002899 ORTHO05D003850 2.5e-20 103.2 252 32.5
CsaV3_2G035840 Cucumis sativus L. HOM05D002899 ORTHO05D003850 3.3e-20 102.8 231 34.6
MBI02_g25679_MAGBIO Magnolia biondii HOM05D002899 ORTHO05D003850 4.3e-20 102.4 236 33.5
MELO3C024757.2 Cucumis melo HOM05D002899 ORTHO05D003850 7.3e-20 101.7 231 33.8
Gohir.A11G221200 Gossypium hirsutum HOM05D002899 ORTHO05D003850 7.3e-20 101.7 152 40.8
Gohir.D11G234700 Gossypium hirsutum HOM05D002899 ORTHO05D003850 7.3e-20 101.7 152 40.8
Gorai.007G247300 Gossypium raimondii HOM05D002899 ORTHO05D003850 7.3e-20 101.7 152 40.8
Nitab4.5_0009225g0010 Nicotiana tabacum HOM05D002899 ORTHO05D003850 7.3e-20 101.7 154 44.2
Thecc.05G227100 Theobroma cacao HOM05D002899 ORTHO05D003850 7.3e-20 101.7 152 41.4
TAR633G0361 Trochodendron aralioides HOM05D002899 ORTHO05D003850 7.3e-20 101.7 237 34.6
Eucgr.G00845 Eucalyptus grandis HOM05D002899 ORTHO05D003850 9.6e-20 101.3 269 32.3
Cfa016110 Carpinus fangiana HOM05D002899 ORTHO05D003850 1.3e-19 100.9 235 34.9
ClCG02G007900 Citrullus lanatus HOM05D002899 ORTHO05D003850 1.3e-19 100.9 237 33.3
Lj5P331T27 Lonicera japonica HOM05D002899 ORTHO05D003850 1.3e-19 100.9 249 32.5
CSS0044416 Camellia sinensis var. sinensis HOM05D002899 ORTHO05D003850 2.1e-19 100.1 238 34.5
Atru.chr6.914 Acer truncatum HOM05D002899 ORTHO05D003850 3.6e-19 99.4 154 40.3
AUR62024879 Chenopodium quinoa HOM05D002899 ORTHO05D003850 4.8e-19 99.0 246 30.9
Oeu027900.2 Olea europaea HOM05D002899 ORTHO05D003850 4.8e-19 99.0 205 35.6
Sed0007587 Sechium edule HOM05D002899 ORTHO05D003850 4.8e-19 99.0 237 33.3
AUR62030668 Chenopodium quinoa HOM05D002899 ORTHO05D003850 6.2e-19 98.6 246 30.5
TWI38G1169 Tripterygium wilfordii HOM05D002899 ORTHO05D003850 6.2e-19 98.6 243 31.7
Cpa.g.sc43.153 Carica papaya HOM05D002899 ORTHO05D003850 8.1e-19 98.2 157 40.1
Manes.09G130600 Manihot esculenta HOM05D002899 ORTHO05D003850 1.1e-18 97.8 191 35.6
Solyc10g005990.4 Solanum lycopersicum HOM05D002899 ORTHO05D003850 1.4e-18 97.4 249 32.1
MSTRG.8559 Avicennia marina HOM05D002899 ORTHO05D003850 1.8e-18 97.1 217 35.9
CAN.G492.37 Capsicum annuum HOM05D002899 ORTHO05D003850 1.8e-18 97.1 247 31.6
ECA247G1085 Erigeron canadensis HOM05D002899 ORTHO05D003850 1.8e-18 97.1 269 30.9
Lsat_1_v5_gn_9_37520 Lactuca sativa HOM05D002899 ORTHO05D003850 1.8e-18 97.1 154 42.2
Sopen10g001950 Solanum pennellii HOM05D002899 ORTHO05D003850 1.8e-18 97.1 249 32.1
Nn3g21896 Nelumbo nucifera HOM05D002899 ORTHO05D003850 4.0e-18 95.9 208 35.6
PGR142G0302 Punica granatum HOM05D002899 ORTHO05D003850 4.0e-18 95.9 155 40.0
Atru.chr12.1814 Acer truncatum HOM05D002899 ORTHO05D003850 5.3e-18 95.5 156 40.4
Aa31LG11G5630 Aethionema arabicum HOM05D002899 ORTHO05D003850 5.3e-18 95.5 183 37.2
EL10Ac2g02592 Beta vulgaris HOM05D002899 ORTHO05D003850 5.3e-18 95.5 183 35.0
Dinv04696 Davidia involucrata HOM05D002899 ORTHO05D003850 5.3e-18 95.5 191 37.7
Glyma.02G073100 Glycine max HOM05D002899 ORTHO05D003850 5.3e-18 95.5 238 30.7
Oeu028990.1 Olea europaea HOM05D002899 ORTHO05D003850 5.3e-18 95.5 229 32.8
Sabra19G0053900 Salix brachista HOM05D002899 ORTHO05D003850 5.3e-18 95.5 181 36.5
Lalb_Chr09g0328871 Lupinus albus HOM05D002899 ORTHO05D003850 6.9e-18 95.1 238 29.8
Potri.019G043200 Populus trichocarpa HOM05D002899 ORTHO05D003850 9.0e-18 94.7 216 33.3
Sc11g0002190 Simmondsia chinensis HOM05D002899 ORTHO05D003850 9.0e-18 94.7 247 31.6
unitig_21.g20691 Utricularia gibba HOM05D002899 ORTHO05D003850 1.2e-17 94.4 211 35.5
CDE05G1238 Ceratophyllum demersum HOM05D002899 ORTHO05D003850 1.5e-17 94.0 201 33.8
HanXRQChr15g0463941 Helianthus annuus HOM05D002899 ORTHO05D003850 1.5e-17 94.0 181 36.5
Lju926C12T4 Lonicera japonica HOM05D002899 ORTHO05D003850 1.5e-17 94.0 277 32.5
Sc06g0010130 Simmondsia chinensis HOM05D002899 ORTHO05D003850 1.5e-17 94.0 246 31.7
Sabra13G0065200 Salix brachista HOM05D002899 ORTHO05D003850 2.0e-17 93.6 211 32.2
SGA_v2.0_scaffold39G15236 Striga asiatica HOM05D002899 ORTHO05D003850 3.4e-17 92.8 183 36.1
Phvul.004G082100 Phaseolus vulgaris HOM05D002899 ORTHO05D003850 4.5e-17 92.4 161 40.4
DCAR_022992 Daucus carota HOM05D002899 ORTHO05D003850 7.6e-17 91.7 211 33.2
Potri.013G076000 Populus trichocarpa HOM05D002899 ORTHO05D003850 7.6e-17 91.7 178 34.8
PGSC0003DMG400014409 Solanum tuberosum HOM05D002899 ORTHO05D003850 7.6e-17 91.7 249 31.7
THA.LOC104823791 Tarenaya hassleriana HOM05D002899 ORTHO05D003850 7.6e-17 91.7 158 38.6
A09p60630 Brassica napus HOM05D002899 ORTHO05D003850 1.3e-16 90.9 156 39.7
SEGI_23967 Sequoiadendron giganteum HOM05D002899 ORTHO05D003850 1.3e-16 90.9 159 37.1
CARHR017600 Cardamine hirsuta HOM05D002899 ORTHO05D003850 2.2e-16 90.1 158 38.6
AL1G29240 Arabidopsis lyrata HOM05D002899 ORTHO05D003850 3.8e-16 89.4 158 38.6
Carub.0001s1679 Capsella rubella HOM05D002899 ORTHO05D003850 3.8e-16 89.4 158 39.2
THA.LOC104805726 Tarenaya hassleriana HOM05D002899 ORTHO05D003850 3.8e-16 89.4 158 36.7
MSTRG.22435 Avicennia marina HOM05D002899 ORTHO05D003850 8.4e-16 88.2 181 36.5
AT1G17070 Arabidopsis thaliana HOM05D002899 ORTHO05D003850 1.1e-15 87.8 158 38.6
BcaC07g41444 Brassica carinata HOM05D002899 ORTHO05D003850 1.4e-15 87.4 156 38.5
C08p44090 Brassica napus HOM05D002899 ORTHO05D003850 1.4e-15 87.4 156 38.5
BolC8t51957H Brassica oleracea HOM05D002899 ORTHO05D003850 1.4e-15 87.4 156 38.5
SHI02598 Sapria himalayana HOM05D002899 ORTHO05D003850 1.4e-15 87.4 234 28.6
Peaxi162Scf00017g01725 Petunia axillaris HOM05D002899 ORTHO05D003850 1.9e-15 87.0 237 30.0
Rhsim06G0232100 Rhododendron simsii HOM05D002899 ORTHO05D003850 1.9e-15 87.0 182 34.6
AagrBONN_evm.TU.Sc2ySwM_340.341 Anthoceros agrestis HOM05D002899 ORTHO05D003850 2.4e-15 86.7 159 39.6
Aqoxy2G00924 Aquilegia oxysepala HOM05D002899 ORTHO05D003850 2.4e-15 86.7 234 32.5
arahy.Tifrunner.gnm1.ann1.VWPR3S Arachis hypogaea HOM05D002899 ORTHO05D003850 2.4e-15 86.7 193 35.2
HanXRQChr10g0291501 Helianthus annuus HOM05D002899 ORTHO05D003850 2.4e-15 86.7 154 39.6
Lsat_1_v5_gn_9_37500 Lactuca sativa HOM05D002899 ORTHO05D003850 3.2e-15 86.3 154 37.0
Psat4g207720 Pisum sativum HOM05D002899 ORTHO05D003850 3.2e-15 86.3 161 40.4
ATR1098G071 Amborella trichopoda HOM05D002899 ORTHO05D003850 4.2e-15 85.9 182 35.2
Sc09g0008570 Simmondsia chinensis HOM05D002899 ORTHO05D003850 4.2e-15 85.9 208 32.7
arahy.Tifrunner.gnm1.ann1.T623PT Arachis hypogaea HOM05D002899 ORTHO05D003850 7.1e-15 85.1 193 34.7
PSO339G6595 Papaver somniferum HOM05D002899 ORTHO05D003850 7.1e-15 85.1 166 38.6
HPP92_017274 Vanilla planifolia HOM05D002899 ORTHO05D003850 9.3e-15 84.7 154 37.0
arahy.Tifrunner.gnm1.ann1.2Q8IWK Arachis hypogaea HOM05D002899 ORTHO05D003850 1.2e-14 84.3 192 34.9
Ciclev10030682m.g Citrus clementina HOM05D002899 ORTHO05D003850 1.2e-14 84.3 185 33.0
Thhalv10006789m.g Eutrema salsugineum HOM05D002899 ORTHO05D003850 1.2e-14 84.3 158 37.3
Ah.12g063970 Amaranthus hybridus HOM05D002899 ORTHO05D003850 1.6e-14 84.0 164 36.0
COL.COLO4_32217 Corchorus olitorius HOM05D002899 ORTHO05D003850 1.6e-14 84.0 167 33.5
Actinidia27037 Actinidia chinensis HOM05D002899 ORTHO05D003850 2.1e-14 83.6 182 33.0
BcaC07g41394 Brassica carinata HOM05D002899 ORTHO05D003850 2.1e-14 83.6 192 30.7
PSO384G0661 Papaver somniferum HOM05D002899 ORTHO05D003850 3.5e-14 82.8 166 38.0
Pp3c19_6430 Physcomitrium patens HOM05D002899 ORTHO05D003850 6.0e-14 82.0 157 37.6
AUR62014872 Chenopodium quinoa HOM05D002899 ORTHO05D003850 7.9e-14 81.6 227 32.6
Pp3c22_1760 Physcomitrium patens HOM05D002899 ORTHO05D003850 7.9e-14 81.6 158 38.6
QL03p062784 Quercus lobata HOM05D002899 ORTHO05D003850 1.0e-13 81.3 80 55.0
QL03p066723 Quercus lobata HOM05D002899 ORTHO05D003850 1.0e-13 81.3 80 55.0
Mapoly0121s0014 Marchantia polymorpha HOM05D002899 ORTHO05D003850 3.0e-13 79.7 158 39.2
AL4G40710 Arabidopsis lyrata HOM05D002899 ORTHO05D003850 8.7e-13 78.2 172 35.5
BcaB02g06683 Brassica carinata HOM05D002899 ORTHO05D003850 8.7e-13 78.2 175 34.3
Medtr8g010350 Medicago truncatula HOM05D002899 ORTHO05D003850 1.1e-12 77.8 155 36.8
Ca_23166_v3 Cicer arietinum L. HOM05D002899 ORTHO05D003850 1.9e-12 77.0 166 38.0
ECA247G0541 Erigeron canadensis HOM05D002899 ORTHO05D003850 1.9e-12 77.0 173 32.4
AT2G42330 Arabidopsis thaliana HOM05D002899 ORTHO05D003850 3.3e-12 76.3 160 34.4
CDE02G4151 Ceratophyllum demersum HOM05D000614 ORTHO05D000463 3.3e-12 76.3 70 55.7
Mapoly0085s0035 Marchantia polymorpha HOM05D002899 ORTHO05D003850 3.3e-12 76.3 151 37.1
Medtr7g070300 Medicago truncatula HOM05D002899 ORTHO05D010192 5.6e-12 75.5 129 40.3
QL03p062749 Quercus lobata HOM05D002899 ORTHO05D003850 5.6e-12 75.5 157 34.4
Medtr7g070290 Medicago truncatula HOM05D002899 ORTHO05D003850 7.4e-12 75.1 126 39.7
Sc09g0008520 Simmondsia chinensis HOM05D002899 ORTHO05D003850 9.6e-12 74.7 55 63.6
Migut.F00929 Erythranthe guttata HOM05D002899 ORTHO05D003850 2.8e-11 73.2 210 31.0
Rhsim03G0225400 Rhododendron simsii HOM05D002899 ORTHO05D003850 3.6e-11 72.8 155 36.8
Glyma.16G154400 Glycine max HOM05D002899 ORTHO05D003850 6.2e-11 72.0 161 35.4
VMungo0464G0921 Vigna mungo HOM05D002899 ORTHO05D003850 6.2e-11 72.0 160 35.0
CBR_g50354 Chara braunii HOM05D002899 ORTHO05D003850 1.4e-10 70.9 164 32.3
Aqoxy6G01664 Aquilegia oxysepala HOM05D002899 ORTHO05D003850 2.4e-10 70.1 153 33.3
BraA09t41433Z Brassica rapa HOM05D002899 ORTHO05D003850 5.3e-10 68.9 156 34.6
FAN12G4041 Fragaria x ananassa HOM05D002899 ORTHO05D010192 5.3e-10 68.9 43 69.8
BolC5t30252H Brassica oleracea HOM05D002899 ORTHO05D010192 9.0e-10 68.2 56 57.1
TPR.G27642 Trifolium pratense HOM05D002899 ORTHO05D003850 9.0e-10 68.2 166 38.0
BcaC05g25671 Brassica carinata HOM05D002899 ORTHO05D003850 1.2e-09 67.8 156 33.3
AUR62031081 Chenopodium quinoa HOM05D002899 ORTHO05D003850 1.2e-09 67.8 205 29.8
FvH4_4g13670 Fragaria vesca HOM05D002899 ORTHO05D010192 1.2e-09 67.8 43 69.8
PGR031G2485 Punica granatum HOM05D002899 ORTHO05D003850 2.6e-09 66.6 155 34.2
DCAR_009032 Daucus carota HOM05D002899 ORTHO05D010792 3.4e-09 66.2 59 50.8
Lj9A25T22 Lonicera japonica HOM05D002899 ORTHO05D003850 3.4e-09 66.2 163 32.5
Lj1g0022689 Lotus japonicus HOM05D002899 ORTHO05D003850 3.4e-09 66.2 161 36.0
CARHR137380 Cardamine hirsuta HOM05D002899 ORTHO05D003850 4.5e-09 65.9 153 32.7
C05p15440 Brassica napus HOM05D002899 ORTHO05D003850 7.6e-09 65.1 114 36.8
A06p12970 Brassica napus HOM05D002899 ORTHO05D010192 4.9e-08 62.4 94 41.5
BraA06t24456Z Brassica rapa HOM05D002899 ORTHO05D010192 4.9e-08 62.4 94 41.5
TPR.G6614 Trifolium pratense HOM05D002899 ORTHO05D003850 6.4e-08 62.0 154 35.1
Sp1g15190 Schrenkiella parvula HOM05D002899 ORTHO05D003850 8.4e-08 61.6 140 34.3
MCO06G176 Micromonas commoda HOM05D002899 ORTHO05D003850 1.9e-07 60.5 48 60.4
RcHm_v2.0_Chr4g0414501 Rosa chinensis HOM05D002899 ORTHO05D010192 1.9e-07 60.5 54 51.9
SMO165G0034 Selaginella moellendorffii HOM05D002899 ORTHO05D003850 9.3e-07 58.2 145 32.4
Nn2g12259 Nelumbo nucifera HOM05D004574 ORTHO05D005612 1.2e-06 57.8 63 47.6
SEGI_39097 Sequoiadendron giganteum HOM05D008617 ORTHO05D010792 1.6e-06 57.4 46 54.3
SEGI_36802 Sequoiadendron giganteum HOM05D008111 ORTHO05D010192 2.1e-06 57.0 52 48.1
SEGI_37624 Sequoiadendron giganteum HOM05D008111 ORTHO05D010192 2.1e-06 57.0 88 35.2
SEGI_21570 Sequoiadendron giganteum HOM05D008111 ORTHO05D010192 2.7e-06 56.6 40 57.5
Gohir.D06G048700 Gossypium hirsutum HOM05D004574 ORTHO05D005612 4.6e-06 55.8 49 57.1
Gorai.010G054900 Gossypium raimondii HOM05D004574 ORTHO05D005612 4.6e-06 55.8 49 57.1
Cre07.g325713 Chlamydomonas reinhardtii HOM05D002899 ORTHO05D003850 6.0e-06 55.5 55 47.3
Gohir.A06G049000 Gossypium hirsutum HOM05D004574 ORTHO05D005612 6.0e-06 55.5 49 57.1
Oeu040778.1 Olea europaea HOM05D004574 ORTHO05D005612 7.9e-06 55.1 59 47.5
TPR.G29541 Trifolium pratense HOM05D002899 ORTHO05D003850 7.9e-06 55.1 170 32.4


User provided reference genes

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