Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0290411 Rosa chinensis HOM05D007082 ORTHO05D008895 4.6e-106 387.9 194 100.0
FvH4_2g23151 Fragaria vesca HOM05D007082 ORTHO05D008895 1.6e-74 283.1 161 87.6
FAN20G2212 Fragaria x ananassa HOM05D007082 ORTHO05D008895 1.8e-73 279.6 161 86.3
MD03G1260600 Malus domestica HOM05D007082 ORTHO05D008895 7.0e-70 267.7 158 81.6
Prupe.8G236800 Prunus persica HOM05D004770 ORTHO05D005572 3.8e-68 261.9 178 75.8
CiPaw.07G089100 Carya illinoinensis HOM05D007082 ORTHO05D008895 2.2e-63 246.1 164 74.4
Haze_04674 Corylus avellana HOM05D007082 ORTHO05D008895 2.4e-62 242.7 158 73.4
Cfa004492 Carpinus fangiana HOM05D007082 ORTHO05D008895 4.5e-61 238.4 158 73.4
CSS0029740 Camellia sinensis var. sinensis HOM05D007082 ORTHO05D008895 7.7e-61 237.7 162 70.4
CSS0021912 Camellia sinensis var. sinensis HOM05D007082 ORTHO05D008895 1.0e-60 237.3 162 70.4
QL12p020738 Quercus lobata HOM05D007082 ORTHO05D008895 1.9e-59 233.0 158 70.9
Haze_10047 Corylus avellana HOM05D007082 ORTHO05D008895 3.0e-57 225.7 158 69.0
Manes.01G205300 Manihot esculenta HOM05D007082 ORTHO05D008895 2.0e-56 223.0 154 70.8
Potri.005G212900 Populus trichocarpa HOM05D007082 ORTHO05D008895 2.0e-56 223.0 158 65.2
Ciclev10022619m.g Citrus clementina HOM05D007082 ORTHO05D008895 5.7e-56 221.5 158 66.5
Dinv32900 Davidia involucrata HOM05D007082 ORTHO05D008895 9.8e-56 220.7 152 68.4
Haze_10052 Corylus avellana HOM05D007082 ORTHO05D008895 3.7e-55 218.8 158 66.5
Atru.chr5.1487 Acer truncatum HOM05D000296 ORTHO05D000175 1.1e-54 217.2 157 68.2
Lalb_Chr10g0095561 Lupinus albus HOM05D007082 ORTHO05D008895 1.1e-54 217.2 159 68.6
Hund09516 Selenicereus undatus HOM05D007082 ORTHO05D008895 1.4e-54 216.9 164 66.5
TWI12G0539 Tripterygium wilfordii HOM05D007082 ORTHO05D008895 5.4e-54 214.9 156 67.9
CANSAT25G2376 Cannabis sativa HOM05D007082 ORTHO05D008895 7.0e-54 214.5 155 66.5
Nitab4.5_0016351g0010 Nicotiana tabacum HOM05D007082 ORTHO05D008895 2.7e-53 212.6 165 62.4
Lj2P1167T48 Lonicera japonica HOM05D007082 ORTHO05D008895 3.5e-53 212.2 156 63.5
Oeu025749.1 Olea europaea HOM05D007082 ORTHO05D008895 3.5e-53 212.2 154 65.6
MSTRG.18253 Avicennia marina HOM05D007082 ORTHO05D008895 4.5e-53 211.8 154 63.6
CAN.G410.16 Capsicum annuum HOM05D007082 ORTHO05D008895 1.0e-52 210.7 165 63.0
Sabra05G0162600 Salix brachista HOM05D004770 ORTHO05D005572 1.3e-52 210.3 148 64.9
Sopen01g035010 Solanum pennellii HOM05D007082 ORTHO05D008895 1.7e-52 209.9 165 63.0
Sed0015110 Sechium edule HOM05D007082 ORTHO05D008895 2.3e-52 209.5 160 64.4
arahy.Tifrunner.gnm1.ann1.CZ80LA Arachis hypogaea HOM05D007082 ORTHO05D008895 3.8e-52 208.8 161 64.6
Rhsim13G0027400 Rhododendron simsii HOM05D007082 ORTHO05D008895 5.0e-52 208.4 162 63.6
SalBow4G2456 Salvia bowleyana HOM05D007082 ORTHO05D008895 5.0e-52 208.4 154 63.6
vmacro14749 Vaccinium macrocarpon HOM05D007082 ORTHO05D008895 8.6e-52 207.6 151 64.9
arahy.Tifrunner.gnm1.ann1.4F6QX0 Arachis hypogaea HOM05D007082 ORTHO05D008895 1.1e-51 207.2 160 65.0
SGA_v2.0_scaffold12G06137 Striga asiatica HOM05D003153 ORTHO05D008895 1.1e-51 207.2 181 58.6
Thecc.05G027700 Theobroma cacao HOM05D007082 ORTHO05D008895 1.5e-51 206.8 158 62.0
ClCG07G000420 Citrullus lanatus HOM05D007082 ORTHO05D008895 1.9e-51 206.5 159 62.9
Cc01_g19180 Coffea canephora HOM05D007082 ORTHO05D008895 1.9e-51 206.5 154 63.0
Lj2g0002316 Lotus japonicus HOM05D007082 ORTHO05D008895 1.9e-51 206.5 157 65.0
Lsat_1_v5_gn_9_86820 Lactuca sativa HOM05D007082 ORTHO05D008895 2.5e-51 206.1 156 64.7
Psat6g025560 Pisum sativum HOM05D007082 ORTHO05D008895 1.2e-50 203.8 157 64.3
Migut.D00329 Erythranthe guttata HOM05D007082 ORTHO05D008895 1.6e-50 203.4 154 63.0
DCAR_002714 Daucus carota HOM05D007082 ORTHO05D008895 2.8e-50 202.6 163 64.4
TAR622G1184 Trochodendron aralioides HOM05D007082 ORTHO05D008895 3.6e-50 202.2 161 59.0
Medtr1g033230 Medicago truncatula HOM05D007082 ORTHO05D008895 6.1e-50 201.4 157 63.7
Lsat_1_v5_gn_9_6120 Lactuca sativa HOM05D007082 ORTHO05D008895 8.0e-50 201.1 157 63.1
Nn5g27058 Nelumbo nucifera HOM05D007082 ORTHO05D008895 8.0e-50 201.1 157 61.8
Ah.11g050380 Amaranthus hybridus HOM05D007082 ORTHO05D008895 1.0e-49 200.7 165 60.6
Medtr5g020430 Medicago truncatula HOM05D007082 ORTHO05D008895 1.0e-49 200.7 157 63.7
SGA_v2.0_scaffold1G00512 Striga asiatica HOM05D007082 ORTHO05D008895 1.0e-49 200.7 153 64.7
MELO3C014298.2 Cucumis melo HOM05D007082 ORTHO05D008895 4.0e-49 198.7 155 62.6
CsaV3_2G013600 Cucumis sativus L. HOM05D007082 ORTHO05D008895 1.2e-48 197.2 155 62.6
HanXRQChr05g0154391 Helianthus annuus HOM05D007082 ORTHO05D008895 1.5e-48 196.8 154 61.7
TPR.G34570 Trifolium pratense HOM05D007082 ORTHO05D008895 1.5e-48 196.8 157 63.1
PGR119G0159 Punica granatum HOM05D007082 ORTHO05D008895 5.7e-48 194.9 153 62.1
Psat6g050280 Pisum sativum HOM05D007082 ORTHO05D008895 7.5e-48 194.5 157 61.1
Eucgr.H01442 Eucalyptus grandis HOM05D007082 ORTHO05D008895 8.3e-47 191.0 149 61.1
Duzib128G1180 Durio zibethinus HOM05D007082 ORTHO05D008895 1.1e-46 190.7 158 58.2
COL.COLO4_14680 Corchorus olitorius HOM05D007082 ORTHO05D008895 3.2e-46 189.1 158 57.6
Eucgr.H01429 Eucalyptus grandis HOM05D007082 ORTHO05D008895 5.4e-46 188.3 149 60.4
MD15G1065600 Malus domestica HOM05D007082 ORTHO05D008895 9.2e-46 187.6 125 77.6
THA.LOC104800748 Tarenaya hassleriana HOM05D007082 ORTHO05D008895 1.2e-45 187.2 156 62.8
PSO832G2607 Papaver somniferum HOM05D007082 ORTHO05D008895 1.6e-45 186.8 162 54.3
Actinidia00788 Actinidia chinensis HOM05D004770 ORTHO05D005572 2.7e-45 186.0 160 57.5
Eucgr.H01435 Eucalyptus grandis HOM05D007082 ORTHO05D008895 4.6e-45 185.3 150 58.7
Glyma.08G176000 Glycine max HOM05D007082 ORTHO05D008895 7.8e-45 184.5 157 59.9
PSO210G1980 Papaver somniferum HOM05D007082 ORTHO05D008895 1.0e-44 184.1 172 50.6
Aa31LG5G6620 Aethionema arabicum HOM05D007082 ORTHO05D008895 3.0e-44 182.6 155 60.0
Carub.0001s0641 Capsella rubella HOM05D007082 ORTHO05D008895 3.9e-44 182.2 156 59.6
Cpa.g.sc41.65 Carica papaya HOM05D007082 ORTHO05D008895 5.0e-44 181.8 148 58.8
Eucgr.H01418 Eucalyptus grandis HOM05D007082 ORTHO05D008895 6.6e-44 181.4 147 59.2
EL10Ac5g10526 Beta vulgaris HOM05D007082 ORTHO05D008895 5.6e-43 178.3 157 57.3
AL1G17250 Arabidopsis lyrata HOM05D007082 ORTHO05D008895 9.5e-43 177.6 158 57.0
Gohir.D07G082600 Gossypium hirsutum HOM05D007082 ORTHO05D008895 2.1e-42 176.4 160 54.4
Gorai.001G088200 Gossypium raimondii HOM05D007082 ORTHO05D008895 3.6e-42 175.6 153 54.9
Sc05g0001390 Simmondsia chinensis HOM05D007082 ORTHO05D008895 3.6e-42 175.6 152 54.6
MBI19_g34822_MAGBIO Magnolia biondii HOM05D007082 ORTHO05D008895 4.7e-42 175.3 151 57.0
CARHR006820 Cardamine hirsuta HOM05D007082 ORTHO05D008895 1.4e-41 173.7 156 56.4
SHI10976 Sapria himalayana HOM05D007082 ORTHO05D008895 4.0e-41 172.2 147 56.5
Sp1g05880 Schrenkiella parvula HOM05D007082 ORTHO05D008895 1.5e-40 170.2 156 56.4
AT1G07130 Arabidopsis thaliana HOM05D007082 ORTHO05D008895 2.0e-40 169.9 156 55.8
VMungo1215G3041 Vigna mungo HOM05D007082 ORTHO05D008895 2.0e-40 169.9 157 56.7
HanXRQChr16g0516211 Helianthus annuus HOM05D007082 ORTHO05D008895 7.5e-40 167.9 142 59.2
ECA247G0055 Erigeron canadensis HOM05D007082 ORTHO05D008895 1.3e-39 167.2 123 61.8
Thhalv10008979m.g Eutrema salsugineum HOM05D007082 ORTHO05D008895 1.3e-39 167.2 156 54.5
CDE05G2411 Ceratophyllum demersum HOM05D007082 ORTHO05D008895 1.4e-38 163.7 153 52.9
C08p02920 Brassica napus HOM05D007082 ORTHO05D008895 3.2e-38 162.5 154 53.2
BolC8t47089H Brassica oleracea HOM05D007082 ORTHO05D008895 3.2e-38 162.5 154 53.2
A08p35770 Brassica napus HOM05D007082 ORTHO05D008895 1.2e-37 160.6 154 53.9
BraA08t35483Z Brassica rapa HOM05D007082 ORTHO05D008895 1.2e-37 160.6 154 53.9
SEGI_21621 Sequoiadendron giganteum HOM05D007082 ORTHO05D008895 6.0e-37 158.3 163 48.5
Zm00001eb394240 Zea mays HOM05D007082 ORTHO05D008895 1.3e-36 157.1 160 52.5
BolC8t47080H Brassica oleracea HOM05D007082 ORTHO05D008895 5.0e-36 155.2 154 51.9
unitig_0.g135 Utricularia gibba HOM05D004770 ORTHO05D005572 8.6e-36 154.5 151 50.3
AUR62032313 Chenopodium quinoa HOM05D007082 ORTHO05D008895 1.9e-35 153.3 161 50.9
Phvul.003G015400 Phaseolus vulgaris HOM05D007082 ORTHO05D008895 3.3e-35 152.5 148 55.4
BcaB03g13405 Brassica carinata HOM05D007082 ORTHO05D008895 1.6e-34 150.2 155 49.7
Gohir.A07G077800 Gossypium hirsutum HOM05D007082 ORTHO05D008895 2.1e-34 149.8 160 50.0
Os03g0366900 Oryza sativa ssp. japonica HOM05D007082 ORTHO05D008895 2.1e-34 149.8 157 51.0
AUR62011993 Chenopodium quinoa HOM05D007082 ORTHO05D008895 1.1e-33 147.5 161 49.7
C08p02850 Brassica napus HOM05D007082 ORTHO05D008895 3.1e-33 146.0 165 46.1
Lj3g0026065 Lotus japonicus HOM05D007082 ORTHO05D008895 1.2e-32 144.1 118 61.0
SGA_v2.0_scaffold80G25747 Striga asiatica HOM05D004770 ORTHO05D005572 1.2e-32 144.1 182 47.3
Eucgr.L00806 Eucalyptus grandis HOM05D007082 ORTHO05D008895 1.1e-30 137.5 149 45.0
Aqoxy5G02465 Aquilegia oxysepala HOM05D007082 ORTHO05D008895 2.7e-29 132.9 164 47.0
Pp3c1_6180 Physcomitrium patens HOM05D007082 ORTHO05D008895 1.1e-27 127.5 159 42.1
Mapoly0041s0121 Marchantia polymorpha HOM05D007082 ORTHO05D008895 3.3e-27 125.9 156 41.0
ATR0580G091 Amborella trichopoda HOM05D007082 ORTHO05D008895 5.2e-25 118.6 151 42.4
AagrBONN_evm.TU.Sc2ySwM_117.1416 Anthoceros agrestis HOM05D007082 ORTHO05D008895 3.2e-22 109.4 154 38.3
Medtr5g020340 Medicago truncatula HOM05D000096 ORTHO05D008895 7.1e-22 108.2 130 46.9
Actinidia09115 Actinidia chinensis HOM05D007082 ORTHO05D008895 6.4e-15 85.1 66 53.0
SMO307G0023 Selaginella moellendorffii HOM05D007082 ORTHO05D008895 5.6e-11 72.0 101 39.6
MCO14G264 Micromonas commoda HOM05D007082 ORTHO05D008895 6.2e-10 68.6 120 30.0
Peaxi162Scf01115g00007 Petunia axillaris HOM05D007082 ORTHO05D008895 5.3e-09 65.5 66 57.6
Thhalv10000282m.g Eutrema salsugineum HOM05D002728 ORTHO05D002874 1.5e-08 63.9 136 29.4
A04p18810 Brassica napus HOM05D002728 ORTHO05D002874 5.8e-08 62.0 136 28.7
Carub.0004s0383 Capsella rubella HOM05D002728 ORTHO05D002874 5.8e-08 62.0 131 29.0
AL4G14970 Arabidopsis lyrata HOM05D002728 ORTHO05D002874 7.6e-08 61.6 131 29.0
PGSC0003DMG400045025 Solanum tuberosum HOM05D007082 ORTHO05D008895 7.6e-08 61.6 114 37.7
BcaB06g27981 Brassica carinata HOM05D002728 ORTHO05D002874 9.9e-08 61.2 180 26.1
Sp4g03490 Schrenkiella parvula HOM05D002728 ORTHO05D002874 1.3e-07 60.8 139 27.3
Sc05g0001360 Simmondsia chinensis HOM05D007082 ORTHO05D008895 1.3e-07 60.8 141 33.3
BolC4t26964H Brassica oleracea HOM05D002728 ORTHO05D002874 1.7e-07 60.5 136 27.9
BraA04t17490Z Brassica rapa HOM05D002728 ORTHO05D002874 1.7e-07 60.5 136 27.9
C04p54120 Brassica napus HOM05D002728 ORTHO05D002874 2.2e-07 60.1 178 25.8
BcaC02g08447 Brassica carinata HOM05D002728 ORTHO05D002874 2.9e-07 59.7 179 25.7
PRCOL_00001098 Prasinoderma coloniale HOM05D007082 ORTHO05D008895 3.8e-07 59.3 175 30.3
AT2G24490 Arabidopsis thaliana HOM05D002728 ORTHO05D002874 1.1e-06 57.8 131 28.2
Aa31LG7G11480 Aethionema arabicum HOM05D002728 ORTHO05D002874 1.4e-06 57.4 144 25.0
TAR626G0658 Trochodendron aralioides HOM05D002728 ORTHO05D002874 1.9e-06 57.0 145 29.0
DCAR_000664 Daucus carota HOM05D002728 ORTHO05D002874 7.1e-06 55.1 136 25.7
Thhalv10021296m.g Eutrema salsugineum HOM05D002728 ORTHO05D002874 9.3e-06 54.7 134 27.6


User provided reference genes

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