Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0289621 Rosa chinensis HOM05D004135 ORTHO05D028393 5.6e-33 143.7 71 100.0
RcHm_v2.0_Chr5g0018341 Rosa chinensis HOM05D004135 ORTHO05D005558 8.0e-24 113.2 70 81.4
FvH4_3g11400 Fragaria vesca HOM05D004135 ORTHO05D005558 4.0e-23 110.9 70 78.6
QL05p064858 Quercus lobata HOM05D004135 ORTHO05D005558 6.8e-23 110.2 69 78.3
RcHm_v2.0_Chr0c29g0501101 Rosa chinensis HOM05D004135 ORTHO05D028393 2.6e-22 108.2 59 86.4
RcHm_v2.0_Chr1g0337861 Rosa chinensis HOM05D004135 ORTHO05D028393 2.6e-22 108.2 59 86.4
CiPaw.09G148400 Carya illinoinensis HOM05D004135 ORTHO05D005558 9.8e-22 106.3 70 74.3
Cfa000762 Carpinus fangiana HOM05D004135 ORTHO05D005558 1.3e-21 105.9 70 74.3
FAN16G1287 Fragaria x ananassa HOM05D004135 ORTHO05D005558 1.3e-21 105.9 72 76.4
FAN25G0882 Fragaria x ananassa HOM05D004135 ORTHO05D005558 1.3e-21 105.9 72 76.4
CANSAT35G0477 Cannabis sativa HOM05D004135 ORTHO05D005558 1.7e-21 105.5 70 70.0
FAN21G1456 Fragaria x ananassa HOM05D004135 ORTHO05D005558 1.7e-21 105.5 72 75.0
MSTRG.7569 Avicennia marina HOM05D004135 ORTHO05D005558 3.7e-21 104.4 70 74.3
MSTRG.16319 Avicennia marina HOM05D004135 ORTHO05D005558 1.4e-20 102.4 70 72.9
Migut.M01941 Erythranthe guttata HOM05D004135 ORTHO05D005558 2.4e-20 101.7 70 71.4
MELO3C007042.2 Cucumis melo HOM05D004135 ORTHO05D005558 4.1e-20 100.9 70 72.9
CsaV3_6G052670 Cucumis sativus L. HOM05D004135 ORTHO05D005558 4.1e-20 100.9 70 71.4
PGR083G2348 Punica granatum HOM05D004135 ORTHO05D005558 5.4e-20 100.5 70 70.0
Eucgr.D01026 Eucalyptus grandis HOM05D004135 ORTHO05D005558 7.0e-20 100.1 70 71.4
Cpa.g.sc285.5 Carica papaya HOM05D004135 ORTHO05D005558 9.2e-20 99.8 70 70.0
Ca_00931_v3 Cicer arietinum L. HOM05D004135 ORTHO05D005558 9.2e-20 99.8 70 71.4
Lj6g0020585 Lotus japonicus HOM05D004135 ORTHO05D005558 9.2e-20 99.8 70 71.4
TPR.G8030 Trifolium pratense HOM05D004135 ORTHO05D005558 9.2e-20 99.8 70 71.4
Prupe.4G101800 Prunus persica HOM05D004135 ORTHO05D005558 1.2e-19 99.4 70 70.0
ClCG01G025420 Citrullus lanatus HOM05D004135 ORTHO05D005558 1.6e-19 99.0 70 71.4
Potri.011G155800 Populus trichocarpa HOM05D004135 ORTHO05D005558 1.6e-19 99.0 70 68.6
Sed0006315 Sechium edule HOM05D004135 ORTHO05D005558 1.6e-19 99.0 70 71.4
Thecc.06G007700 Theobroma cacao HOM05D004135 ORTHO05D005558 1.6e-19 99.0 70 70.0
CSS0034299 Camellia sinensis var. sinensis HOM05D004135 ORTHO05D005558 2.1e-19 98.6 70 67.1
Duzib160G0522 Durio zibethinus HOM05D004135 ORTHO05D005558 2.1e-19 98.6 70 68.6
Duzib235G1539 Durio zibethinus HOM05D004135 ORTHO05D005558 2.1e-19 98.6 70 68.6
Gohir.A05G111900 Gossypium hirsutum HOM05D004135 ORTHO05D005558 2.1e-19 98.6 70 68.6
Gohir.D05G112400 Gossypium hirsutum HOM05D004135 ORTHO05D005558 2.1e-19 98.6 70 68.6
Gorai.009G116600 Gossypium raimondii HOM05D004135 ORTHO05D005558 2.1e-19 98.6 70 68.6
Medtr2g032130 Medicago truncatula HOM05D004135 ORTHO05D005558 2.7e-19 98.2 70 70.0
SGA_v2.0_scaffold298G47640 Striga asiatica HOM05D004135 ORTHO05D005558 2.7e-19 98.2 70 70.0
Gorai.005G119100 Gossypium raimondii HOM05D004135 ORTHO05D005558 3.5e-19 97.8 70 68.6
TWI15G0841 Tripterygium wilfordii HOM05D004135 ORTHO05D005558 3.5e-19 97.8 70 67.1
Manes.14G126900 Manihot esculenta HOM05D004135 ORTHO05D005558 4.6e-19 97.4 70 68.6
Peaxi162Scf00195g00518 Petunia axillaris HOM05D004135 ORTHO05D005558 6.0e-19 97.1 70 67.1
Sed0027064 Sechium edule HOM05D004135 ORTHO05D005558 6.0e-19 97.1 70 70.0
Aa31LG6G11870 Aethionema arabicum HOM05D004135 ORTHO05D005558 7.8e-19 96.7 70 67.1
Thhalv10008349m.g Eutrema salsugineum HOM05D004135 ORTHO05D005558 7.8e-19 96.7 70 67.1
Gohir.A02G088700 Gossypium hirsutum HOM05D004135 ORTHO05D005558 7.8e-19 96.7 68 69.1
Gohir.D02G104900 Gossypium hirsutum HOM05D004135 ORTHO05D005558 7.8e-19 96.7 70 67.1
HanXRQChr11g0340901 Helianthus annuus HOM05D004135 ORTHO05D005558 7.8e-19 96.7 68 67.6
Nitab4.5_0001219g0030 Nicotiana tabacum HOM05D004135 ORTHO05D005558 7.8e-19 96.7 70 65.7
Nitab4.5_0012414g0010 Nicotiana tabacum HOM05D004135 ORTHO05D005558 7.8e-19 96.7 70 65.7
THA.LOC104814339 Tarenaya hassleriana HOM05D004135 ORTHO05D005558 7.8e-19 96.7 70 68.6
GSVIVG01021747001 Vitis vinifera HOM05D004135 ORTHO05D005558 7.8e-19 96.7 70 67.1
Actinidia25200 Actinidia chinensis HOM05D004135 ORTHO05D005558 1.0e-18 96.3 70 64.3
Carub.0004s1652 Capsella rubella HOM05D004135 ORTHO05D005558 1.0e-18 96.3 70 65.7
THA.LOC104798582 Tarenaya hassleriana HOM05D004135 ORTHO05D005558 1.0e-18 96.3 70 67.1
Os04g0612600 Oryza sativa ssp. japonica HOM05D004135 ORTHO05D005558 1.3e-18 95.9 70 67.1
CAN.G675.30 Capsicum annuum HOM05D004135 ORTHO05D005558 1.7e-18 95.5 70 65.7
Hma1.2p1_0300F.1_g117980 Hydrangea macrophylla HOM05D004135 ORTHO05D005558 1.7e-18 95.5 70 67.1
Zm00001eb430730 Zea mays HOM05D004135 ORTHO05D005558 1.7e-18 95.5 70 67.1
Glyma.15G136100 Glycine max HOM05D004135 ORTHO05D005558 2.3e-18 95.1 67 68.7
Phvul.006G122500 Phaseolus vulgaris HOM05D004135 ORTHO05D005558 2.3e-18 95.1 67 67.2
Sp1g26530 Schrenkiella parvula HOM05D004135 ORTHO05D005558 2.3e-18 95.1 70 65.7
TWI38G0133 Tripterygium wilfordii HOM05D004135 ORTHO05D005558 2.3e-18 95.1 70 67.1
BcaC01g05751 Brassica carinata HOM05D004135 ORTHO05D005558 3.0e-18 94.7 70 64.3
A03p19330 Brassica napus HOM05D004135 ORTHO05D005558 3.0e-18 94.7 70 64.3
C03p22580 Brassica napus HOM05D004135 ORTHO05D005558 3.0e-18 94.7 70 64.3
BolC3t14655H Brassica oleracea HOM05D004135 ORTHO05D005558 3.0e-18 94.7 70 64.3
BraA03t11189Z Brassica rapa HOM05D004135 ORTHO05D005558 3.0e-18 94.7 70 64.3
Oeu060331.1 Olea europaea HOM05D004135 ORTHO05D005558 3.0e-18 94.7 70 67.1
unitig_748.g7354 Utricularia gibba HOM05D004135 ORTHO05D005558 3.0e-18 94.7 70 65.7
BcaB06g28829 Brassica carinata HOM05D004135 ORTHO05D005558 3.9e-18 94.4 70 64.3
Glyma.09G030400 Glycine max HOM05D004135 ORTHO05D005558 3.9e-18 94.4 67 67.2
PSO541G2415 Papaver somniferum HOM05D004135 ORTHO05D005558 3.9e-18 94.4 70 67.1
PSO675G0864 Papaver somniferum HOM05D004135 ORTHO05D005558 3.9e-18 94.4 70 67.1
Sopen02g018720 Solanum pennellii HOM05D004135 ORTHO05D005558 3.9e-18 94.4 70 65.7
VMungo0540G1545 Vigna mungo HOM05D004135 ORTHO05D005558 3.9e-18 94.4 67 67.2
AT1G30630 Arabidopsis thaliana HOM05D004135 ORTHO05D005558 5.1e-18 94.0 70 64.3
BcaB07g32703 Brassica carinata HOM05D004135 ORTHO05D005558 5.1e-18 94.0 70 64.3
BraA04t18166Z Brassica rapa HOM05D004135 ORTHO05D005558 5.1e-18 94.0 70 64.3
CDE02G1412 Ceratophyllum demersum HOM05D004135 ORTHO05D005558 5.1e-18 94.0 70 64.3
DCAR_003828 Daucus carota HOM05D004135 ORTHO05D005558 5.1e-18 94.0 70 64.3
Thhalv10017028m.g Eutrema salsugineum HOM05D004135 ORTHO05D005558 5.1e-18 94.0 70 64.3
Sp4g17120 Schrenkiella parvula HOM05D004135 ORTHO05D005558 5.1e-18 94.0 70 64.3
TAR627G0684 Trochodendron aralioides HOM05D004135 ORTHO05D005558 5.1e-18 94.0 70 65.7
Lalb_Chr20g0120301 Lupinus albus HOM05D004135 ORTHO05D005558 6.6e-18 93.6 70 67.1
SalBow8G1631 Salvia bowleyana HOM05D004135 ORTHO05D005558 6.6e-18 93.6 70 67.1
SalBow8G2729 Salvia bowleyana HOM05D004135 ORTHO05D005558 6.6e-18 93.6 70 67.1
Lsat_1_v5_gn_1_86700 Lactuca sativa HOM05D004135 ORTHO05D005558 8.6e-18 93.2 68 64.7
arahy.Tifrunner.gnm1.ann1.CJHC7K Arachis hypogaea HOM05D004135 ORTHO05D005558 1.1e-17 92.8 74 66.2
C04p64030 Brassica napus HOM05D004135 ORTHO05D005558 1.1e-17 92.8 70 62.9
Solyc02g069585.1 Solanum lycopersicum HOM05D004135 ORTHO05D005558 1.1e-17 92.8 70 64.3
Aa31LG10G6460 Aethionema arabicum HOM05D004135 ORTHO05D005558 1.5e-17 92.4 70 62.9
AL1G44690 Arabidopsis lyrata HOM05D004135 ORTHO05D005558 1.5e-17 92.4 70 62.9
BcaC05g27087 Brassica carinata HOM05D004135 ORTHO05D005558 1.5e-17 92.4 70 64.3
A04p26610 Brassica napus HOM05D004135 ORTHO05D005558 1.5e-17 92.4 70 62.9
A09p35780 Brassica napus HOM05D004135 ORTHO05D005558 1.5e-17 92.4 70 64.3
C05p29690 Brassica napus HOM05D004135 ORTHO05D005558 1.5e-17 92.4 70 64.3
BolC5t31698H Brassica oleracea HOM05D004135 ORTHO05D005558 1.5e-17 92.4 70 64.3
BraA09t39101Z Brassica rapa HOM05D004135 ORTHO05D005558 1.5e-17 92.4 70 64.3
Carub.0001s2889 Capsella rubella HOM05D004135 ORTHO05D005558 1.5e-17 92.4 70 62.9
Nn7g38349 Nelumbo nucifera HOM05D004135 ORTHO05D005558 1.5e-17 92.4 70 65.7
Ciclev10016127m.g Citrus clementina HOM05D004135 ORTHO05D005558 1.9e-17 92.0 70 65.7
PGSC0003DMG400021137 Solanum tuberosum HOM05D004135 ORTHO05D005558 1.9e-17 92.0 70 64.3
TAR629G2923 Trochodendron aralioides HOM05D004135 ORTHO05D005558 1.9e-17 92.0 70 62.9
ATR0763G246 Amborella trichopoda HOM05D004135 ORTHO05D005558 3.3e-17 91.3 70 64.3
AT2G34840 Arabidopsis thaliana HOM05D004135 ORTHO05D005558 3.3e-17 91.3 70 62.9
BcaC02g07752 Brassica carinata HOM05D004135 ORTHO05D005558 3.3e-17 91.3 70 62.9
Lj2A337T32 Lonicera japonica HOM05D004135 ORTHO05D005558 3.3e-17 91.3 67 65.7
Nn4g26687 Nelumbo nucifera HOM05D004135 ORTHO05D005558 3.3e-17 91.3 70 64.3
BolC4t27879H Brassica oleracea HOM05D004135 ORTHO05D005558 5.6e-17 90.5 70 62.9
ECA236G2122 Erigeron canadensis HOM05D000091 ORTHO05D001510 5.6e-17 90.5 70 62.9
Atru.chr6.3256 Acer truncatum HOM05D004135 ORTHO05D005558 7.3e-17 90.1 70 67.1
Manes.06G053900 Manihot esculenta HOM05D004135 ORTHO05D005558 7.3e-17 90.1 70 64.3
TWI81G0788 Tripterygium wilfordii HOM05D004135 ORTHO05D005558 7.3e-17 90.1 68 66.2
DCAR_007807 Daucus carota HOM05D004135 ORTHO05D005558 9.5e-17 89.7 72 61.1
Sabra11G0144000 Salix brachista HOM05D004135 ORTHO05D005558 1.6e-16 89.0 85 56.5
HanXRQChr04g0119201 Helianthus annuus HOM05D004135 ORTHO05D005558 2.1e-16 88.6 70 61.4
Lj1A1156T44 Lonicera japonica HOM05D004135 ORTHO05D005558 2.1e-16 88.6 82 57.3
Sopen02g009560 Solanum pennellii HOM05D004135 ORTHO05D005558 2.8e-16 88.2 70 61.4
HPP92_013200 Vanilla planifolia HOM05D004135 ORTHO05D005558 2.8e-16 88.2 70 60.0
MD10G1241400 Malus domestica HOM05D004135 ORTHO05D005558 3.6e-16 87.8 69 62.3
Aqoxy6G00202 Aquilegia oxysepala HOM05D004135 ORTHO05D005558 4.7e-16 87.4 70 58.6
PGSC0003DMG400031401 Solanum tuberosum HOM05D004135 ORTHO05D005558 4.7e-16 87.4 70 61.4
CARHR030110 Cardamine hirsuta HOM05D004135 ORTHO05D005558 6.2e-16 87.0 70 60.0
EL10Ac8g19524 Beta vulgaris HOM05D004135 ORTHO05D005558 8.1e-16 86.7 70 60.0
AUR62027344 Chenopodium quinoa HOM05D004135 ORTHO05D005558 8.1e-16 86.7 70 58.6
Sc24g0002580 Simmondsia chinensis HOM05D004135 ORTHO05D005558 8.1e-16 86.7 70 61.4
AUR62042515 Chenopodium quinoa HOM05D004135 ORTHO05D005558 1.1e-15 86.3 70 58.6
Haze_05958 Corylus avellana HOM05D006556 ORTHO05D008146 1.4e-15 85.9 63 63.5
Solyc02g030243.1 Solanum lycopersicum HOM05D004135 ORTHO05D005558 1.8e-15 85.5 70 60.0
Actinidia32352 Actinidia chinensis HOM05D004135 ORTHO05D005558 2.3e-15 85.1 71 59.2
Ah.11g045310 Amaranthus hybridus HOM05D004135 ORTHO05D005558 2.3e-15 85.1 70 57.1
Os04g0644700 Oryza sativa ssp. japonica HOM05D004135 ORTHO05D005558 2.3e-15 85.1 70 58.6
Lsat_1_v5_gn_7_31180 Lactuca sativa HOM05D004135 ORTHO05D005558 4.0e-15 84.3 70 60.0
vmacro10993 Vaccinium macrocarpon HOM05D004135 ORTHO05D005558 6.8e-15 83.6 59 64.4
Rhsim02G0165800 Rhododendron simsii HOM05D004135 ORTHO05D005558 8.9e-15 83.2 70 58.6
COL.COLO4_26892 Corchorus olitorius HOM05D004135 ORTHO05D005558 2.0e-14 82.0 70 58.6
Zm00001eb432010 Zea mays HOM05D004135 ORTHO05D005558 4.4e-14 80.9 70 57.1
vmacro03457 Vaccinium macrocarpon HOM05D004135 ORTHO05D005558 5.8e-14 80.5 85 49.4
Pp3c6_18240 Physcomitrium patens HOM05D004135 ORTHO05D005558 7.5e-14 80.1 70 55.7
AagrBONN_evm.TU.Sc2ySwM_117.3836 Anthoceros agrestis HOM05D004135 ORTHO05D005558 9.9e-14 79.7 70 52.9
CSS0024113 Camellia sinensis var. sinensis HOM05D004135 ORTHO05D028393 9.9e-14 79.7 57 66.7
Mapoly0002s0056 Marchantia polymorpha HOM05D004135 ORTHO05D005558 1.7e-13 79.0 66 51.5
Pp3c27_2170 Physcomitrium patens HOM05D004135 ORTHO05D005558 1.7e-13 79.0 70 54.3
Pp3c16_16890 Physcomitrium patens HOM05D004135 ORTHO05D005558 2.9e-13 78.2 70 52.9
MBI18_g26296_MAGBIO Magnolia biondii HOM05D004135 ORTHO05D005558 3.7e-13 77.8 87 49.4
Zm00001eb274480 Zea mays HOM05D004135 ORTHO05D005558 3.7e-13 77.8 70 54.3
MD05G1263700 Malus domestica HOM05D004135 ORTHO05D005558 1.1e-12 76.3 70 55.7
Zm00001eb180170 Zea mays HOM05D004135 ORTHO05D444922 4.6e-11 70.9 68 54.4
Actinidia31378 Actinidia chinensis HOM05D004135 ORTHO05D005558 2.1e-08 62.0 38 73.7
SMO358G0532 Selaginella moellendorffii HOM05D004135 ORTHO05D005558 2.1e-08 62.0 70 42.9
Thecc.06G007200 Theobroma cacao HOM05D004135 ORTHO05D005558 6.2e-08 60.5 41 70.7
Psat1g164080 Pisum sativum HOM05D004135 ORTHO05D005558 1.8e-07 58.9 36 75.0
Oeu052702.4 Olea europaea HOM05D004135 ORTHO05D005558 4.0e-07 57.8 38 71.1
Cre13.g592450 Chlamydomonas reinhardtii HOM05D004135 ORTHO05D005558 2.0e-06 55.5 65 41.5
PRCOL_00001868 Prasinoderma coloniale HOM05D004135 ORTHO05D005558 2.0e-06 55.5 70 41.4
Haze_08569 Corylus avellana HOM05D004135 ORTHO05D005558 5.8e-06 53.9 69 44.9
MCO11G236 Micromonas commoda HOM05D004135 ORTHO05D005558 5.8e-06 53.9 64 39.1


User provided reference genes

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