Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0281661 Rosa chinensis HOM05D006835 ORTHO05D008587 2.5e-80 303.1 330 100.0
FAN27G3385 Fragaria x ananassa HOM05D006835 ORTHO05D008587 7.7e-77 291.6 331 98.5
FAN24G3450 Fragaria x ananassa HOM05D006835 ORTHO05D008587 7.9e-74 281.6 331 96.7
FvH4_2g17170 Fragaria vesca HOM05D006835 ORTHO05D008587 7.0e-70 268.5 318 98.4
Prupe.8G183100 Prunus persica HOM05D006835 ORTHO05D008587 1.4e-65 254.2 330 90.6
MD10G1144800 Malus domestica HOM05D006835 ORTHO05D008587 2.5e-59 233.4 317 90.9
Haze_01949 Corylus avellana HOM05D006835 ORTHO05D008587 1.2e-58 231.1 327 85.6
QL11p057002 Quercus lobata HOM05D006835 ORTHO05D008587 2.7e-58 229.9 328 88.1
CANSAT25G2962 Cannabis sativa HOM05D006835 ORTHO05D008587 1.5e-56 224.2 330 85.5
CANSAT25G1616 Cannabis sativa HOM05D006835 ORTHO05D008587 1.7e-55 220.7 330 84.8
CiPaw.06G113200 Carya illinoinensis HOM05D006835 ORTHO05D008587 1.1e-54 218.0 328 70.4
Potri.004G209400 Populus trichocarpa HOM05D006835 ORTHO05D008587 4.5e-53 212.6 328 82.9
Thecc.02G149200 Theobroma cacao HOM05D006835 ORTHO05D008587 1.3e-52 211.1 328 84.5
COL.COLO4_04808 Corchorus olitorius HOM05D006835 ORTHO05D008587 5.0e-52 209.1 328 84.8
Dinv41853 Davidia involucrata HOM05D006835 ORTHO05D008587 6.5e-52 208.8 329 72.6
Oeu034382.1 Olea europaea HOM05D006835 ORTHO05D008587 2.5e-51 206.8 327 83.8
Duzib132G0412 Durio zibethinus HOM05D006835 ORTHO05D008587 4.2e-51 206.1 328 81.4
Sabra04G0141200 Salix brachista HOM05D006835 ORTHO05D008587 7.2e-51 205.3 328 81.7
Cc05_g09290 Coffea canephora HOM05D006835 ORTHO05D008587 4.7e-50 202.6 328 82.9
Gohir.A13G063900 Gossypium hirsutum HOM05D006835 ORTHO05D008587 8.0e-50 201.8 328 83.2
Gohir.D13G058000 Gossypium hirsutum HOM05D006835 ORTHO05D008587 5.2e-49 199.1 328 83.2
Gorai.013G065400 Gossypium raimondii HOM05D006835 ORTHO05D008587 5.2e-49 199.1 328 83.2
MELO3C015685.2 Cucumis melo HOM05D006835 ORTHO05D008587 9.8e-48 194.9 328 74.7
Manes.15G113100 Manihot esculenta HOM05D006835 ORTHO05D008587 1.3e-47 194.5 327 78.6
MBI15_g25631_MAGBIO Magnolia biondii HOM05D006835 ORTHO05D008587 2.2e-47 193.7 318 78.6
Rhsim12G0002300 Rhododendron simsii HOM05D006835 ORTHO05D008587 2.2e-47 193.7 325 82.5
Atru.chr5.3592 Acer truncatum HOM05D006835 ORTHO05D008587 2.8e-47 193.4 328 83.5
CsaV3_7G002240 Cucumis sativus L. HOM05D006835 ORTHO05D008587 6.3e-47 192.2 328 73.8
Lj4g0005221 Lotus japonicus HOM05D006835 ORTHO05D008587 6.3e-47 192.2 328 79.6
Migut.E01343 Erythranthe guttata HOM05D006835 ORTHO05D008587 8.3e-47 191.8 330 80.6
Lalb_Chr09g0328551 Lupinus albus HOM05D006835 ORTHO05D008587 2.4e-46 190.3 328 79.9
PGR042G3426 Punica granatum HOM05D006835 ORTHO05D008587 2.4e-46 190.3 328 79.0
Cpa.g.sc60.7 Carica papaya HOM05D006835 ORTHO05D008587 1.2e-45 188.0 327 81.3
Ciclev10028825m.g Citrus clementina HOM05D006835 ORTHO05D008587 1.2e-45 188.0 328 79.0
arahy.Tifrunner.gnm1.ann1.9A9DF4 Arachis hypogaea HOM05D006835 ORTHO05D008587 2.0e-45 187.2 328 80.8
arahy.Tifrunner.gnm1.ann1.N15UBW Arachis hypogaea HOM05D006835 ORTHO05D008587 2.0e-45 187.2 328 80.8
ClCG02G003170 Citrullus lanatus HOM05D006835 ORTHO05D008587 3.5e-45 186.4 328 75.6
Potri.009G170300 Populus trichocarpa HOM05D006835 ORTHO05D008587 4.5e-45 186.0 322 81.1
Psat7g128400 Pisum sativum HOM05D006835 ORTHO05D008587 2.3e-44 183.7 328 77.7
Peaxi162Scf00078g00114 Petunia axillaris HOM05D006835 ORTHO05D008587 2.9e-44 183.3 328 79.9
MSTRG.1776 Avicennia marina HOM05D006835 ORTHO05D008587 3.8e-44 183.0 329 82.1
GSVIVG01023845001 Vitis vinifera HOM05D006835 ORTHO05D008587 3.8e-44 183.0 328 81.7
Actinidia17982 Actinidia chinensis HOM05D006835 ORTHO05D008587 3.3e-43 179.9 319 80.9
MD05G1145000 Malus domestica HOM05D006835 ORTHO05D008587 3.3e-43 179.9 298 87.6
Sed0006636 Sechium edule HOM05D006835 ORTHO05D008587 4.2e-43 179.5 328 72.6
Sopen11g019950 Solanum pennellii HOM05D006835 ORTHO05D008587 4.2e-43 179.5 328 80.2
Sed0026152 Sechium edule HOM05D006835 ORTHO05D008587 7.2e-43 178.7 328 74.7
PGSC0003DMG400023133 Solanum tuberosum HOM05D006835 ORTHO05D008587 7.2e-43 178.7 328 79.9
Glyma.13G141500 Glycine max HOM05D006835 ORTHO05D008587 1.2e-42 177.9 324 79.0
Hma1.2p1_0332F.1_g127850 Hydrangea macrophylla HOM05D006835 ORTHO05D008587 1.2e-42 177.9 320 81.2
Medtr4g084630 Medicago truncatula HOM05D006835 ORTHO05D008587 2.8e-42 176.8 321 77.6
CAN.G430.3 Capsicum annuum HOM05D006835 ORTHO05D008587 3.6e-42 176.4 328 78.7
Ca_18740_v3 Cicer arietinum L. HOM05D006835 ORTHO05D008587 3.6e-42 176.4 321 79.1
Ca_30877_v3 Cicer arietinum L. HOM05D006835 ORTHO05D008587 3.6e-42 176.4 321 79.1
TWI75G0734 Tripterygium wilfordii HOM05D006835 ORTHO05D008587 4.7e-42 176.0 327 79.5
SalBow8G5127 Salvia bowleyana HOM05D006835 ORTHO05D008587 8.0e-42 175.3 319 76.8
THA.LOC104806593 Tarenaya hassleriana HOM05D006835 ORTHO05D008587 6.8e-41 172.2 327 48.9
Sc08g0001990 Simmondsia chinensis HOM05D006835 ORTHO05D008587 8.9e-41 171.8 330 76.1
Solyc11g044360.3 Solanum lycopersicum HOM05D006835 ORTHO05D008587 1.2e-40 171.4 315 80.6
Atru.BG.81.p Acer truncatum HOM05D006835 ORTHO05D008587 1.5e-40 171.0 312 83.7
Eucgr.H05012 Eucalyptus grandis HOM05D006835 ORTHO05D008587 2.0e-40 170.6 328 78.7
Lsat_1_v5_gn_1_20201 Lactuca sativa HOM05D006835 ORTHO05D008587 2.6e-40 170.2 328 75.9
Nn6g31561 Nelumbo nucifera HOM05D006835 ORTHO05D008587 2.6e-40 170.2 328 80.5
Phvul.007G148200 Phaseolus vulgaris HOM05D006835 ORTHO05D008587 3.4e-40 169.9 328 76.5
unitig_744.g24691 Utricularia gibba HOM05D006835 ORTHO05D008587 7.5e-40 168.7 325 75.7
arahy.Tifrunner.gnm1.ann1.B8P5ZC Arachis hypogaea HOM05D006835 ORTHO05D008587 9.8e-40 168.3 328 79.0
arahy.Tifrunner.gnm1.ann1.ATV9YP Arachis hypogaea HOM05D006835 ORTHO05D008587 1.7e-39 167.5 328 79.0
TPR.G31217 Trifolium pratense HOM05D006835 ORTHO05D008587 1.7e-39 167.5 362 66.0
Aqoxy6G03057 Aquilegia oxysepala HOM05D006835 ORTHO05D008587 6.3e-39 165.6 328 76.8
ECA247G0195 Erigeron canadensis HOM05D006835 ORTHO05D008587 4.1e-38 162.9 328 73.8
PSO541G0957 Papaver somniferum HOM05D006835 ORTHO05D008587 9.2e-38 161.8 336 78.3
ATR0605G237 Amborella trichopoda HOM05D006835 ORTHO05D008587 2.7e-37 160.2 321 68.5
EL10Ac9g21569 Beta vulgaris HOM05D006835 ORTHO05D008587 2.7e-37 160.2 327 74.9
SGA_v2.0_scaffold144G35876 Striga asiatica HOM05D006835 ORTHO05D008587 2.7e-37 160.2 330 76.7
Ah.01g010510 Amaranthus hybridus HOM05D006835 ORTHO05D008587 3.5e-37 159.8 327 77.1
Nitab4.5_0000079g0110 Nicotiana tabacum HOM05D006835 ORTHO05D008587 3.5e-37 159.8 328 79.9
Nitab4.5_0004387g0030 Nicotiana tabacum HOM05D006835 ORTHO05D008587 5.9e-37 159.1 328 79.6
FAN15G1646 Fragaria x ananassa HOM05D006835 ORTHO05D008587 5.0e-36 156.0 80 95.0
Hund06347 Selenicereus undatus HOM05D006835 ORTHO05D008587 1.9e-35 154.1 327 74.3
AUR62010216 Chenopodium quinoa HOM05D006835 ORTHO05D008587 5.6e-35 152.5 327 72.5
AUR62013212 Chenopodium quinoa HOM05D006835 ORTHO05D008587 5.6e-35 152.5 327 72.5
TPR.G38303 Trifolium pratense HOM05D006835 ORTHO05D008587 8.0e-34 148.7 328 71.3
DCAR_006210 Daucus carota HOM05D006835 ORTHO05D008587 4.0e-33 146.4 320 68.1
Carub.0007s0005 Capsella rubella HOM05D006835 ORTHO05D008587 1.2e-32 144.8 326 64.4
CARHR293940 Cardamine hirsuta HOM05D006835 ORTHO05D008587 1.2e-32 144.8 319 66.8
Lsat_1_v5_gn_8_70721 Lactuca sativa HOM05D006835 ORTHO05D008587 2.6e-32 143.7 309 75.7
Sp7g37590 Schrenkiella parvula HOM05D006835 ORTHO05D008587 2.6e-32 143.7 322 65.5
Aa31LG6G16920 Aethionema arabicum HOM05D006835 ORTHO05D008587 9.8e-32 141.7 332 63.6
AT4G38160 Arabidopsis thaliana HOM05D006835 ORTHO05D008587 2.2e-31 140.6 322 70.8
Thhalv10004546m.g Eutrema salsugineum HOM05D006835 ORTHO05D008587 6.4e-31 139.0 322 65.5
AL7G10060 Arabidopsis lyrata HOM05D006835 ORTHO05D008587 1.2e-29 134.8 320 63.8
TAR381G0995 Trochodendron aralioides HOM05D006835 ORTHO05D008587 2.0e-29 134.0 90 75.6
C07p46880 Brassica napus HOM05D006835 ORTHO05D008587 7.8e-29 132.1 328 67.1
BolC7t45204H Brassica oleracea HOM05D006835 ORTHO05D008587 7.8e-29 132.1 328 67.1
A03p48790 Brassica napus HOM05D006835 ORTHO05D008587 1.3e-28 131.3 329 67.8
BraA03t13979Z Brassica rapa HOM05D006835 ORTHO05D008587 1.3e-28 131.3 332 67.2
Glyma.10G054400 Glycine max HOM05D006835 ORTHO05D008587 1.7e-28 131.0 299 78.6
CSS0014591 Camellia sinensis var. sinensis HOM05D006835 ORTHO05D008587 2.8e-26 123.6 277 81.6
VMungo1309G0603 Vigna mungo HOM05D006835 ORTHO05D008587 4.7e-26 122.9 286 80.1
Ah.02g121760 Amaranthus hybridus HOM05D006835 ORTHO05D008587 4.0e-25 119.8 88 63.6
CDE04G0383 Ceratophyllum demersum HOM05D006835 ORTHO05D008587 2.6e-24 117.1 322 51.2
ClCG02G010730 Citrullus lanatus HOM05D006835 ORTHO05D008587 4.9e-23 112.8 296 39.2
Os08g0515800 Oryza sativa ssp. japonica HOM05D006835 ORTHO05D008587 4.1e-22 109.8 330 57.0
SalBow3G3248 Salvia bowleyana HOM05D006835 ORTHO05D008587 3.5e-21 106.7 319 69.3
CSS0013930 Camellia sinensis var. sinensis HOM05D006835 ORTHO05D008587 2.3e-20 104.0 60 80.0
SalBow4G0758 Salvia bowleyana HOM05D006835 ORTHO05D008587 2.1e-18 97.4 319 67.7
vmacro17000 Vaccinium macrocarpon HOM05D006835 ORTHO05D008587 6.2e-18 95.9 323 41.5
TAR381G1325 Trochodendron aralioides HOM05D006835 ORTHO05D008587 8.9e-17 92.0 56 73.2
SalBow8G1833 Salvia bowleyana HOM05D006835 ORTHO05D008587 1.2e-16 91.7 59 71.2
SEGI_34779 Sequoiadendron giganteum HOM05D006835 ORTHO05D008587 1.7e-15 87.8 60 63.3
HPP92_022026 Vanilla planifolia HOM05D006835 ORTHO05D008587 1.3e-12 78.2 58 62.1
Mapoly0015s0200 Marchantia polymorpha HOM05D006835 ORTHO05D008587 1.1e-11 75.1 90 42.2
AagrBONN_evm.TU.Sc2ySwM_344.3279 Anthoceros agrestis HOM05D006835 ORTHO05D008587 2.5e-11 73.9 314 60.2
SEGI_18890 Sequoiadendron giganteum HOM05D006835 ORTHO05D008587 1.7e-07 61.2 42 61.9
Actinidia20590 Actinidia chinensis HOM05D006835 ORTHO05D008587 8.4e-07 58.9 38 68.4
vmacro17002 Vaccinium macrocarpon HOM05D006835 ORTHO05D008587 1.4e-06 58.2 90 42.2
FAN09G1770 Fragaria x ananassa HOM05D005956 ORTHO05D007197 4.2e-06 56.6 58 44.8
FvH4_4g20570 Fragaria vesca HOM05D005956 ORTHO05D006468 5.4e-06 56.2 58 43.1
vmacro17159 Vaccinium macrocarpon HOM05D006835 ORTHO05D008587 7.1e-06 55.8 41 61.0


User provided reference genes

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