Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0281231 Rosa chinensis HOM05D000528 ORTHO05D000999 1.8e-44 183.0 152 100.0
FvH4_2g17050 Fragaria vesca HOM05D000528 ORTHO05D000999 1.4e-33 146.7 76 96.1
FAN27G0212 Fragaria x ananassa HOM05D000528 ORTHO05D000999 1.4e-33 146.7 76 96.1
FAN15G2552 Fragaria x ananassa HOM05D000528 ORTHO05D000999 3.1e-33 145.6 76 94.7
FAN24G2253 Fragaria x ananassa HOM05D000528 ORTHO05D000999 3.1e-33 145.6 76 94.7
MD05G1143400 Malus domestica HOM05D000528 ORTHO05D000999 1.8e-25 119.8 76 80.3
Duzib248G0733 Durio zibethinus HOM05D000528 ORTHO05D000999 3.1e-25 119.0 76 76.3
MD10G1143300 Malus domestica HOM05D000528 ORTHO05D000999 3.1e-25 119.0 76 78.9
Prupe.8G182200 Prunus persica HOM05D000528 ORTHO05D000999 3.1e-25 119.0 76 77.6
Duzib132G0712 Durio zibethinus HOM05D000528 ORTHO05D000999 1.6e-24 116.7 76 75.0
Gohir.D12G013000 Gossypium hirsutum HOM05D000528 ORTHO05D000999 2.7e-24 115.9 76 73.7
Gorai.008G013100 Gossypium raimondii HOM05D000528 ORTHO05D000999 7.7e-24 114.4 76 72.4
Cfa005397 Carpinus fangiana HOM05D000528 ORTHO05D000999 1.0e-23 114.0 76 77.6
Duzib052G1203 Durio zibethinus HOM05D000528 ORTHO05D000999 1.0e-23 114.0 76 75.0
Haze_01955 Corylus avellana HOM05D000528 ORTHO05D000999 1.3e-23 113.6 76 77.6
Gohir.D04G151500 Gossypium hirsutum HOM05D000528 ORTHO05D000999 5.0e-23 111.7 76 72.4
Gorai.012G138200 Gossypium raimondii HOM05D000528 ORTHO05D000999 5.0e-23 111.7 76 72.4
COL.COLO4_03851 Corchorus olitorius HOM05D000528 ORTHO05D000999 6.5e-23 111.3 76 73.7
Gohir.D02G193100 Gossypium hirsutum HOM05D000528 ORTHO05D000999 2.5e-22 109.4 76 71.1
Gorai.005G215900 Gossypium raimondii HOM05D000528 ORTHO05D000999 2.5e-22 109.4 76 71.1
Cpa.g.c29182.2 Carica papaya HOM05D000528 ORTHO05D000999 9.5e-22 107.5 76 71.1
Gohir.A03G170000 Gossypium hirsutum HOM05D000528 ORTHO05D000999 9.5e-22 107.5 76 69.7
Gorai.013G065100 Gossypium raimondii HOM05D000528 ORTHO05D000999 9.5e-22 107.5 76 69.7
Lalb_Chr10g0107731 Lupinus albus HOM05D000528 ORTHO05D000999 9.5e-22 107.5 76 69.7
THA.LOC104804077 Tarenaya hassleriana HOM05D000528 ORTHO05D000999 9.5e-22 107.5 76 71.1
Nn5g31050 Nelumbo nucifera HOM05D000528 ORTHO05D000999 1.6e-21 106.7 76 71.1
Psat2g000400 Pisum sativum HOM05D000528 ORTHO05D000999 2.1e-21 106.3 77 71.4
MELO3C015692.2 Cucumis melo HOM05D000528 ORTHO05D000999 2.8e-21 105.9 76 67.1
CsaV3_7G002160 Cucumis sativus L. HOM05D000528 ORTHO05D000999 2.8e-21 105.9 76 67.1
AT4G38200 Arabidopsis thaliana HOM05D000528 ORTHO05D000999 3.6e-21 105.5 76 68.4
TWI79G1344 Tripterygium wilfordii HOM05D000528 ORTHO05D000999 3.6e-21 105.5 74 73.0
Ca_06507_v3 Cicer arietinum L. HOM05D000528 ORTHO05D000999 4.7e-21 105.1 77 71.4
Lalb_Chr04g0246891 Lupinus albus HOM05D000528 ORTHO05D000999 4.7e-21 105.1 77 70.1
Sp7g37550 Schrenkiella parvula HOM05D000528 ORTHO05D000999 4.7e-21 105.1 75 69.3
Aa31LG6G16910 Aethionema arabicum HOM05D000528 ORTHO05D000999 6.1e-21 104.8 76 68.4
QL11p056832 Quercus lobata HOM05D000528 ORTHO05D000999 6.1e-21 104.8 76 72.4
AL7G10100 Arabidopsis lyrata HOM05D000528 ORTHO05D000999 8.0e-21 104.4 76 67.1
CANSAT25G0393 Cannabis sativa HOM05D000528 ORTHO05D000999 8.0e-21 104.4 76 71.1
MSTRG.27607 Avicennia marina HOM05D000528 ORTHO05D000999 1.0e-20 104.0 88 70.5
BolC7t46797H Brassica oleracea HOM05D000528 ORTHO05D000999 1.4e-20 103.6 76 67.1
Carub.0007s0009 Capsella rubella HOM05D000528 ORTHO05D000999 1.4e-20 103.6 76 67.1
CARHR293970 Cardamine hirsuta HOM05D000528 ORTHO05D000999 1.4e-20 103.6 76 67.1
Thhalv10024199m.g Eutrema salsugineum HOM05D000528 ORTHO05D000999 1.4e-20 103.6 75 68.0
TPR.G18631 Trifolium pratense HOM05D000528 ORTHO05D000999 1.4e-20 103.6 76 71.1
C01p03530 Brassica napus HOM05D000528 ORTHO05D000999 1.8e-20 103.2 76 65.8
BolC1t00342H Brassica oleracea HOM05D000528 ORTHO05D000999 1.8e-20 103.2 76 65.8
ClCG02G003230 Citrullus lanatus HOM05D000528 ORTHO05D000999 1.8e-20 103.2 76 68.4
A01p03180 Brassica napus HOM05D000528 ORTHO05D000999 2.3e-20 102.8 76 65.8
BraA01t00303Z Brassica rapa HOM05D000528 ORTHO05D000999 2.3e-20 102.8 76 65.8
Glyma.14G000300 Glycine max HOM05D000528 ORTHO05D000999 2.3e-20 102.8 79 69.6
THA.LOC104819698 Tarenaya hassleriana HOM05D000528 ORTHO05D000999 2.3e-20 102.8 76 65.8
Potri.004G208400 Populus trichocarpa HOM05D000528 ORTHO05D000999 4.0e-20 102.1 76 71.1
Sed0019498 Sechium edule HOM05D000528 ORTHO05D000999 4.0e-20 102.1 76 67.1
BraA06t27780Z Brassica rapa HOM05D000528 ORTHO05D000999 5.2e-20 101.7 74 67.6
CiPaw.06G113900 Carya illinoinensis HOM05D000528 ORTHO05D000999 5.2e-20 101.7 76 69.7
AL7G15780 Arabidopsis lyrata HOM05D000528 ORTHO05D000999 8.8e-20 100.9 76 65.8
AT4G35380 Arabidopsis thaliana HOM05D000528 ORTHO05D000999 8.8e-20 100.9 76 65.8
Carub.0007s0493 Capsella rubella HOM05D000528 ORTHO05D000999 8.8e-20 100.9 76 65.8
CDE05G0957 Ceratophyllum demersum HOM05D000528 ORTHO05D000999 8.8e-20 100.9 76 64.5
Dinv14186 Davidia involucrata HOM05D000528 ORTHO05D000999 8.8e-20 100.9 76 71.1
LjContig00081g0024847 Lotus japonicus HOM05D000528 ORTHO05D000999 8.8e-20 100.9 76 68.4
arahy.Tifrunner.gnm1.ann1.9EA0XY Arachis hypogaea HOM05D000528 ORTHO05D000999 1.2e-19 100.5 83 65.1
Glyma.02G312200 Glycine max HOM05D000528 ORTHO05D000999 1.2e-19 100.5 78 67.9
Aa31LG6G12380 Aethionema arabicum HOM05D000528 ORTHO05D000999 2.0e-19 99.8 76 64.5
Migut.N01366 Erythranthe guttata HOM05D000528 ORTHO05D000999 2.0e-19 99.8 78 69.2
CARHR243700 Cardamine hirsuta HOM05D000528 ORTHO05D000999 2.6e-19 99.4 76 64.5
Medtr5g099310 Medicago truncatula HOM05D000528 ORTHO05D000999 2.6e-19 99.4 76 65.8
Sed0020334 Sechium edule HOM05D000528 ORTHO05D000999 2.6e-19 99.4 76 65.8
BcaNung01999 Brassica carinata HOM05D000528 ORTHO05D000999 3.4e-19 99.0 77 66.2
PSO675G4154 Papaver somniferum HOM05D000528 ORTHO05D000999 3.4e-19 99.0 80 62.5
Sp7g33170 Schrenkiella parvula HOM05D000528 ORTHO05D000999 3.4e-19 99.0 76 64.5
SGA_v2.0_scaffold98G29311 Striga asiatica HOM05D000528 ORTHO05D000999 4.4e-19 98.6 78 67.9
MSTRG.16960 Avicennia marina HOM05D000528 ORTHO05D000999 5.7e-19 98.2 77 68.8
arahy.Tifrunner.gnm1.ann1.I95U6T Arachis hypogaea HOM05D000528 ORTHO05D000999 7.5e-19 97.8 85 62.4
PSO541G5174 Papaver somniferum HOM05D000528 ORTHO05D000999 7.5e-19 97.8 81 63.0
SalBow5G2253 Salvia bowleyana HOM05D000528 ORTHO05D000999 7.5e-19 97.8 78 67.9
SalBow5G3559 Salvia bowleyana HOM05D000528 ORTHO05D000999 7.5e-19 97.8 78 67.9
SGA_v2.0_scaffold80G25807 Striga asiatica HOM05D000528 ORTHO05D000999 9.8e-19 97.4 77 70.1
HPP92_021916 Vanilla planifolia HOM05D000528 ORTHO05D000999 9.8e-19 97.4 74 64.9
Ciclev10027671m.g Citrus clementina HOM05D000528 ORTHO05D000999 1.7e-18 96.7 76 67.1
PGR142G3048 Punica granatum HOM05D000528 ORTHO05D000999 1.7e-18 96.7 76 64.5
Sabra04G0140400 Salix brachista HOM05D000528 ORTHO05D000999 1.7e-18 96.7 76 68.4
CDE05G1718 Ceratophyllum demersum HOM05D000528 ORTHO05D000999 2.2e-18 96.3 76 61.8
Thhalv10024200m.g Eutrema salsugineum HOM05D000528 ORTHO05D000999 2.2e-18 96.3 76 63.2
Solyc01g112340.3 Solanum lycopersicum HOM05D000528 ORTHO05D000999 2.8e-18 95.9 88 64.8
Sopen01g054440 Solanum pennellii HOM05D000528 ORTHO05D000999 2.8e-18 95.9 88 64.8
Cc09_g10920 Coffea canephora HOM05D000528 ORTHO05D000999 4.9e-18 95.1 76 71.1
Nitab4.5_0009851g0010 Nicotiana tabacum HOM05D000528 ORTHO05D000999 6.3e-18 94.7 78 67.9
Aqoxy6G02996 Aquilegia oxysepala HOM05D000528 ORTHO05D000999 8.3e-18 94.4 73 65.8
CAN.G1645.12 Capsicum annuum HOM05D000528 ORTHO05D000999 8.3e-18 94.4 78 66.7
unitig_748.g8067 Utricularia gibba HOM05D000528 ORTHO05D000999 8.3e-18 94.4 78 65.4
SHI05799 Sapria himalayana HOM05D000528 ORTHO05D000999 1.1e-17 94.0 76 64.5
Actinidia26325 Actinidia chinensis HOM05D000528 ORTHO05D000999 1.4e-17 93.6 78 69.2
Nitab4.5_0001220g0140 Nicotiana tabacum HOM05D000528 ORTHO05D000999 1.4e-17 93.6 73 69.9
arahy.Tifrunner.gnm1.ann1.PIMS1B Arachis hypogaea HOM05D000528 ORTHO05D000999 2.4e-17 92.8 83 61.4
Lsat_1_v5_gn_8_119540 Lactuca sativa HOM05D000528 ORTHO05D000999 5.4e-17 91.7 86 61.6
CSS0040076 Camellia sinensis var. sinensis HOM05D000528 ORTHO05D000999 9.2e-17 90.9 76 68.4
Actinidia32004 Actinidia chinensis HOM05D000528 ORTHO05D000999 1.2e-16 90.5 76 65.8
Lj5C170G20 Lonicera japonica HOM05D000528 ORTHO05D000999 2.0e-16 89.7 70 68.6
Hund00101 Selenicereus undatus HOM05D000528 ORTHO05D000999 2.0e-16 89.7 76 56.6
ATR0605G297 Amborella trichopoda HOM05D000528 ORTHO05D000999 2.7e-16 89.4 78 64.1
AUR62013198 Chenopodium quinoa HOM05D000528 ORTHO05D000999 3.5e-16 89.0 76 55.3
DCAR_005426 Daucus carota HOM05D000528 ORTHO05D000999 3.5e-16 89.0 77 62.3
Peaxi162Scf00362g00022 Petunia axillaris HOM05D000528 ORTHO05D000999 7.8e-16 87.8 73 65.8
Potri.009G169800 Populus trichocarpa HOM05D000528 ORTHO05D000999 7.8e-16 87.8 80 61.2
Ah.01g017710 Amaranthus hybridus HOM05D000528 ORTHO05D000999 1.3e-15 87.0 76 56.6
Sc08g0002040 Simmondsia chinensis HOM05D000528 ORTHO05D000999 1.3e-15 87.0 76 59.2
Gohir.D13G057801 Gossypium hirsutum HOM05D000528 ORTHO05D000999 1.7e-15 86.7 50 82.0
EL10Ac9g21558 Beta vulgaris HOM05D000528 ORTHO05D000999 2.9e-15 85.9 76 53.9
Sabra09G0131600 Salix brachista HOM05D000528 ORTHO05D000999 8.6e-15 84.3 80 60.0
vmacro10880 Vaccinium macrocarpon HOM05D000528 ORTHO05D000999 1.9e-14 83.2 75 60.0
MBI01_g28405_MAGBIO Magnolia biondii HOM05D000528 ORTHO05D000999 4.3e-14 82.0 75 64.0
ECA233G2528 Erigeron canadensis HOM05D000528 ORTHO05D000999 7.3e-14 81.3 71 62.0
HanXRQChr14g0455161 Helianthus annuus HOM05D000528 ORTHO05D000999 2.8e-13 79.3 49 77.6
SEGI_22051 Sequoiadendron giganteum HOM05D000528 ORTHO05D000999 6.1e-13 78.2 78 55.1
Zm00001eb206130 Zea mays HOM05D000528 ORTHO05D000999 3.4e-11 72.4 60 60.0
Gohir.A08G133701 Gossypium hirsutum HOM05D000528 ORTHO05D000999 7.8e-08 61.2 50 56.0
Zm00001eb388040 Zea mays HOM05D000528 ORTHO05D000999 7.8e-08 61.2 88 42.0
CiPaw.02G166800 Carya illinoinensis HOM05D000528 ORTHO05D000999 1.0e-07 60.8 76 42.1
PGR042G1274 Punica granatum HOM05D000528 ORTHO05D000999 1.7e-07 60.1 83 42.2
Hund27352 Selenicereus undatus HOM05D000528 ORTHO05D000999 1.7e-07 60.1 70 45.7
COL.COLO4_12559 Corchorus olitorius HOM05D000528 ORTHO05D000999 5.0e-07 58.5 79 41.8
MD07G1123200 Malus domestica HOM05D000528 ORTHO05D000999 6.6e-07 58.2 75 40.0
Duzib138G0174 Durio zibethinus HOM05D000528 ORTHO05D000999 8.6e-07 57.8 79 40.5
Gohir.D08G154800 Gossypium hirsutum HOM05D000528 ORTHO05D000999 8.6e-07 57.8 50 54.0
SalBow5G0378 Salvia bowleyana HOM05D000528 ORTHO05D000999 8.6e-07 57.8 80 40.0
SalBow5G4354 Salvia bowleyana HOM05D000528 ORTHO05D000999 8.6e-07 57.8 80 40.0
BcaC02g10193 Brassica carinata HOM05D000528 ORTHO05D000999 1.1e-06 57.4 75 41.3
C04p31720 Brassica napus HOM05D000528 ORTHO05D000999 1.1e-06 57.4 75 41.3
BolC4t24721H Brassica oleracea HOM05D000528 ORTHO05D000999 1.1e-06 57.4 75 41.3
BraA04t15857Z Brassica rapa HOM05D000528 ORTHO05D000999 1.1e-06 57.4 75 41.3
Duzib133G0584 Durio zibethinus HOM05D000528 ORTHO05D000999 1.1e-06 57.4 79 41.8
Manes.05G044300 Manihot esculenta HOM05D000528 ORTHO05D000999 1.1e-06 57.4 78 41.0
Thecc.01G375000 Theobroma cacao HOM05D000528 ORTHO05D000999 1.1e-06 57.4 79 39.2
A04p01370 Brassica napus HOM05D000528 ORTHO05D000999 1.5e-06 57.0 75 41.3
MSTRG.20755 Avicennia marina HOM05D000528 ORTHO05D000999 1.9e-06 56.6 63 47.6
Lalb_Chr12g0208321 Lupinus albus HOM05D000528 ORTHO05D000999 1.9e-06 56.6 79 38.0
Aa31LG1G11290 Aethionema arabicum HOM05D000528 ORTHO05D000999 2.5e-06 56.2 51 54.9
BraA09t42272Z Brassica rapa HOM05D000528 ORTHO05D000999 2.5e-06 56.2 51 58.8
Haze_16826 Corylus avellana HOM05D000528 ORTHO05D000999 2.5e-06 56.2 76 42.1
TWI59G0018 Tripterygium wilfordii HOM05D000528 ORTHO05D000999 2.5e-06 56.2 81 43.2
AT3G60860 Arabidopsis thaliana HOM05D000528 ORTHO05D000999 3.3e-06 55.8 76 39.5
CiPaw.01G261100 Carya illinoinensis HOM05D000528 ORTHO05D000999 3.3e-06 55.8 80 40.0
THA.LOC104814085 Tarenaya hassleriana HOM05D000528 ORTHO05D000999 3.3e-06 55.8 51 54.9
AagrBONN_evm.TU.Sc2ySwM_117.2536 Anthoceros agrestis HOM05D000528 ORTHO05D000999 4.3e-06 55.5 89 37.1
AL5G43180 Arabidopsis lyrata HOM05D000528 ORTHO05D000999 4.3e-06 55.5 76 39.5
EL10Ac1g00906 Beta vulgaris HOM05D000528 ORTHO05D000999 4.3e-06 55.5 88 38.6
Aqoxy7G00597 Aquilegia oxysepala HOM05D000528 ORTHO05D000999 5.6e-06 55.1 79 41.8
AL1G10360 Arabidopsis lyrata HOM05D000528 ORTHO05D000999 5.6e-06 55.1 51 52.9
AL1G13490 Arabidopsis lyrata HOM05D002403 ORTHO05D002724 5.6e-06 55.1 51 52.9
CARHR000390 Cardamine hirsuta HOM05D000528 ORTHO05D000999 5.6e-06 55.1 51 52.9
Gorai.004G160900 Gossypium raimondii HOM05D000528 ORTHO05D000999 5.6e-06 55.1 50 52.0
Actinidia12265 Actinidia chinensis HOM05D000528 ORTHO05D000999 7.3e-06 54.7 51 52.9
AT1G01960 Arabidopsis thaliana HOM05D000528 ORTHO05D000999 7.3e-06 54.7 51 52.9
BcaC07g42347 Brassica carinata HOM05D000528 ORTHO05D000999 7.3e-06 54.7 51 58.8
C08p53970 Brassica napus HOM05D000528 ORTHO05D000999 7.3e-06 54.7 51 58.8
BolC8t52910H Brassica oleracea HOM05D000528 ORTHO05D000999 7.3e-06 54.7 51 58.8
CSS0048094 Camellia sinensis var. sinensis HOM05D000528 ORTHO05D000999 7.3e-06 54.7 50 54.0
CANSAT56G0585 Cannabis sativa HOM05D000528 ORTHO05D000999 7.3e-06 54.7 80 38.8
Thhalv10006576m.g Eutrema salsugineum HOM05D000528 ORTHO05D000999 7.3e-06 54.7 76 43.4
FAN27G2043 Fragaria x ananassa HOM05D000528 ORTHO05D000999 7.3e-06 54.7 77 39.0
Prupe.2G146800 Prunus persica HOM05D000528 ORTHO05D000999 7.3e-06 54.7 80 42.5
SHI13520 Sapria himalayana HOM05D000528 ORTHO05D000999 7.3e-06 54.7 79 38.0
Atru.chr5.321 Acer truncatum HOM05D000528 ORTHO05D000999 9.5e-06 54.3 80 40.0
FvH4_7g12020 Fragaria vesca HOM05D000528 ORTHO05D000999 9.5e-06 54.3 80 38.8
FAN01G0475 Fragaria x ananassa HOM05D000528 ORTHO05D000999 9.5e-06 54.3 80 38.8
FAN03G2295 Fragaria x ananassa HOM05D000528 ORTHO05D000999 9.5e-06 54.3 80 38.8
FAN06G3409 Fragaria x ananassa HOM05D000528 ORTHO05D000999 9.5e-06 54.3 80 38.8
FAN06G3597 Fragaria x ananassa HOM05D000528 ORTHO05D000999 9.5e-06 54.3 80 38.8
FAN10G0017 Fragaria x ananassa HOM05D000528 ORTHO05D000999 9.5e-06 54.3 80 38.8
PSO782G2518 Papaver somniferum HOM05D000528 ORTHO05D000999 9.5e-06 54.3 89 38.2
Sp1g00340 Schrenkiella parvula HOM05D000528 ORTHO05D000999 9.5e-06 54.3 51 52.9
Hund17011 Selenicereus undatus HOM05D000528 ORTHO05D000999 9.5e-06 54.3 50 52.0


User provided reference genes

Program Settings