Gene: AT1G01960

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G01960
  • Transcript Identifier AT1G01960.1
  • Gene Type Coding gene
  • Location Chr1 : 330830-337582 : negative

Gene Family Information

  • ID HOM05D000528
  • #Genes/#Species 1033/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G01960.1
  • symbol EDA10
  • full_name embryo sac development arrest 10
  • uniprot Q9LPC5

Descriptions

  • Description SEC7-like guanine nucleotide exchange family protein
  • Computational description embryo sac development arrest 10 (EDA10); FUNCTIONS IN: binding, ARF guanyl-nucleotide exchange factor activity, guanyl-nucleotide exchange factor activity; INVOLVED IN: megagametogenesis; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SEC7-like (InterPro:IPR000904), Armadillo-type fold (InterPro:IPR016024), Protein of unknown function DUF1981, SEC7 associated (InterPro:IPR015403); BEST Arabidopsis thaliana protein match is: SEC7-like guanine nucleotide exchange family protein (TAIR:AT3G60860.1); Has 2904 Blast hits to 2648 proteins in 246 species: Archae - 0; Bacteria - 34; Metazoa - 1480; Fungi - 646; Plants - 300; Viruses - 0; Other Eukaryotes - 444 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0032012
IEA
Gene Ontologyregulation of ARF protein signal transduction
GO:0032012
IEA
InterProregulation of ARF protein signal transduction
GO:0015031
IEA
GOA Databaseprotein transport
GO:0050790
IEA
GOA Databaseregulation of catalytic activity
GO:0016192
IMP
Gene Ontologyvesicle-mediated transport1
GO:0009561
IMP
Gene Ontologymegagametogenesis2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005085
IEA
GOA Databaseguanyl-nucleotide exchange factor activity
GO:0005085
IEA
InterProguanyl-nucleotide exchange factor activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016020
IEA
GOA Databasemembrane
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005634
IDA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0005829
IDA
IEA
GOA Databasecytosol
GO:0005829
HDA
IBA
Gene Ontologycytosol3 4
GO:0005802
IBA
Gene Ontologytrans-Golgi network3
GO:0032588
IDA
Gene Ontologytrans-Golgi network membrane1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR016024 Armadillo-type fold
IPR035999 Sec7 domain superfamily
IPR023394 Sec7, C-terminal domain superfamily
IPR032817 Mon2, C-terminal
IPR000904 Sec7 domain
IPR032691 Guanine nucleotide exchange factor, N-terminal
IPR015403 Sec7, C-terminal
IPR032629 Mon2, dimerisation and cyclophilin-binding domain
Mapman id Description
22.3.2.2.2 Vesicle trafficking.post-Golgi trafficking.coat protein recruiting.ARF-GTPase guanyl-nucleotide exchange.ARF-GEF factor (BIG)