Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0275831 Rosa chinensis HOM05D005180 ORTHO05D006136 2.4e-125 452.2 237 100.0
FvH4_2g13990 Fragaria vesca HOM05D005180 ORTHO05D006136 3.6e-121 438.3 238 97.1
FAN20G0932 Fragaria x ananassa HOM05D005180 ORTHO05D006136 6.2e-121 437.6 238 96.6
FAN24G0415 Fragaria x ananassa HOM05D005180 ORTHO05D006136 1.4e-120 436.4 238 96.6
FAN27G2246 Fragaria x ananassa HOM05D005180 ORTHO05D006136 3.1e-120 435.3 238 97.1
FAN15G0398 Fragaria x ananassa HOM05D005180 ORTHO05D006136 2.0e-119 432.6 238 95.8
Prupe.8G027400 Prunus persica HOM05D005180 ORTHO05D006136 6.2e-113 411.0 237 90.7
MD10G1023900 Malus domestica HOM05D005180 ORTHO05D006136 4.0e-112 408.3 237 89.5
Lalb_Chr20g0121321 Lupinus albus HOM05D005180 ORTHO05D006136 2.5e-98 362.5 243 79.0
Ciclev10021949m.g Citrus clementina HOM05D005180 ORTHO05D006136 9.0e-96 354.0 241 77.6
vmacro07270 Vaccinium macrocarpon HOM05D005180 ORTHO05D006136 1.2e-95 353.6 242 77.3
Potri.013G080200 Populus trichocarpa HOM05D005180 ORTHO05D006136 7.7e-95 350.9 239 77.0
Sabra13G0072900 Salix brachista HOM05D005180 ORTHO05D006136 5.0e-94 348.2 237 76.8
Nitab4.5_0000428g0030 Nicotiana tabacum HOM05D005180 ORTHO05D006136 5.5e-93 344.7 243 74.1
Nitab4.5_0002915g0060 Nicotiana tabacum HOM05D005180 ORTHO05D006136 1.2e-92 343.6 243 74.5
Peaxi162Scf00050g01910 Petunia axillaris HOM05D005180 ORTHO05D006136 2.7e-92 342.4 243 72.8
CsaV3_2G036420 Cucumis sativus L. HOM05D005180 ORTHO05D006136 1.0e-91 340.5 239 77.4
Eucgr.D02531 Eucalyptus grandis HOM05D005180 ORTHO05D006136 1.4e-91 340.1 209 83.3
Ca_00419_v3 Cicer arietinum L. HOM05D005180 ORTHO05D006136 5.1e-91 338.2 241 73.4
MELO3C021887.2 Cucumis melo HOM05D005180 ORTHO05D006136 5.1e-91 338.2 239 76.6
Gorai.003G054000 Gossypium raimondii HOM05D005180 ORTHO05D006136 6.7e-91 337.8 242 74.0
PGSC0003DMG400022705 Solanum tuberosum HOM05D005180 ORTHO05D006136 6.7e-91 337.8 243 72.0
VMungo0540G0753 Vigna mungo HOM05D005180 ORTHO05D006136 6.7e-91 337.8 206 83.0
Glyma.15G080600 Glycine max HOM05D005180 ORTHO05D006136 1.1e-90 337.0 242 74.0
Solyc01g008990.4 Solanum lycopersicum HOM05D005180 ORTHO05D006136 1.1e-90 337.0 242 71.9
Sopen01g004480 Solanum pennellii HOM05D005180 ORTHO05D006136 2.0e-90 336.3 243 71.6
Gohir.D03G052000 Gossypium hirsutum HOM05D005180 ORTHO05D006136 4.3e-90 335.1 242 73.6
Duzib106G0272 Durio zibethinus HOM05D005180 ORTHO05D006136 7.4e-90 334.3 242 74.8
Phvul.006G178100 Phaseolus vulgaris HOM05D005180 ORTHO05D006136 9.7e-90 334.0 206 82.5
CAN.G714.6 Capsicum annuum HOM05D005180 ORTHO05D006136 1.3e-89 333.6 243 72.0
Glyma.13G232100 Glycine max HOM05D005180 ORTHO05D006136 1.3e-89 333.6 207 82.6
Sed0003176 Sechium edule HOM05D005180 ORTHO05D006136 1.3e-89 333.6 239 74.5
TPR.G11750 Trifolium pratense HOM05D005180 ORTHO05D006136 1.7e-89 333.2 241 72.6
Haze_00396 Corylus avellana HOM05D005180 ORTHO05D006136 4.8e-89 331.6 242 73.6
ClCG09G016930 Citrullus lanatus HOM05D005180 ORTHO05D006136 8.2e-89 330.9 239 75.3
Psat1g199720 Pisum sativum HOM05D005180 ORTHO05D006136 1.1e-88 330.5 205 81.5
Thecc.05G216000 Theobroma cacao HOM05D005180 ORTHO05D006136 1.4e-88 330.1 205 82.4
Actinidia07010 Actinidia chinensis HOM05D005180 ORTHO05D006136 2.4e-88 329.3 242 73.6
CiPaw.06G034400 Carya illinoinensis HOM05D005180 ORTHO05D006136 2.4e-88 329.3 242 73.6
COL.COLO4_15239 Corchorus olitorius HOM05D005180 ORTHO05D006136 2.4e-88 329.3 206 81.1
HanXRQChr01g0020751 Helianthus annuus HOM05D005180 ORTHO05D006136 2.4e-88 329.3 243 72.8
GSVIVG01037378001 Vitis vinifera HOM05D005180 ORTHO05D006136 2.4e-88 329.3 242 73.6
Manes.08G064700 Manihot esculenta HOM05D005180 ORTHO05D006136 3.1e-88 328.9 239 74.1
PGR004G2116 Punica granatum HOM05D005180 ORTHO05D006136 6.9e-88 327.8 249 71.5
Sopen11g029830 Solanum pennellii HOM05D005180 ORTHO05D006136 6.9e-88 327.8 240 70.8
Rhsim13G0203300 Rhododendron simsii HOM05D005180 ORTHO05D006136 1.2e-87 327.0 206 81.6
Lj6g0006583 Lotus japonicus HOM05D005180 ORTHO05D006136 1.5e-87 326.6 209 80.9
Rhsim04G0005300 Rhododendron simsii HOM05D005180 ORTHO05D006136 1.5e-87 326.6 206 80.6
Aqoxy5G01637 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 2.0e-87 326.2 242 71.5
Hma1.2p1_1711F.1_g298680 Hydrangea macrophylla HOM05D005180 ORTHO05D006136 2.0e-87 326.2 205 81.0
Sc24g0001580 Simmondsia chinensis HOM05D005180 ORTHO05D006136 2.6e-87 325.9 239 70.7
CSS0011166 Camellia sinensis var. sinensis HOM05D005180 ORTHO05D006136 4.5e-87 325.1 242 72.7
Gohir.A02G141500 Gossypium hirsutum HOM05D005180 ORTHO05D006136 5.9e-87 324.7 206 80.6
Cc01_g07100 Coffea canephora HOM05D005180 ORTHO05D006136 1.7e-86 323.2 242 71.1
CANSAT56G1354 Cannabis sativa HOM05D005180 ORTHO05D006136 2.2e-86 322.8 245 71.8
arahy.Tifrunner.gnm1.ann1.F0IXSY Arachis hypogaea HOM05D005180 ORTHO05D006136 2.9e-86 322.4 239 72.4
arahy.Tifrunner.gnm1.ann1.ZTB6Z9 Arachis hypogaea HOM05D005180 ORTHO05D006136 2.9e-86 322.4 239 72.4
Cfa016051 Carpinus fangiana HOM05D005180 ORTHO05D006136 5.0e-86 321.6 242 71.9
Duzib177G0947 Durio zibethinus HOM05D005180 ORTHO05D006136 5.0e-86 321.6 205 80.5
QL09p023193 Quercus lobata HOM05D005180 ORTHO05D006136 5.0e-86 321.6 202 81.2
arahy.Tifrunner.gnm1.ann1.ZY7ZXH Arachis hypogaea HOM05D005180 ORTHO05D006136 6.5e-86 321.2 239 72.0
MSTRG.18479 Avicennia marina HOM05D005180 ORTHO05D006136 8.5e-86 320.9 239 71.5
Medtr2g015520 Medicago truncatula HOM05D005180 ORTHO05D006136 1.1e-85 320.5 205 79.5
PSO063G1868 Papaver somniferum HOM05D005180 ORTHO05D006136 2.5e-85 319.3 246 69.9
Nitab4.5_0002161g0010 Nicotiana tabacum HOM05D005180 ORTHO05D006136 3.2e-85 318.9 240 69.2
TWI32G1096 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 9.4e-85 317.4 203 79.3
Lsat_1_v5_gn_1_93761 Lactuca sativa HOM05D005180 ORTHO05D006136 1.2e-84 317.0 247 69.6
CAN.G1085.4 Capsicum annuum HOM05D005180 ORTHO05D006136 1.6e-84 316.6 239 69.0
TAR374G0042 Trochodendron aralioides HOM05D005180 ORTHO05D006136 1.6e-84 316.6 205 79.5
Nitab4.5_0002567g0080 Nicotiana tabacum HOM05D005180 ORTHO05D006136 2.1e-84 316.2 240 68.3
TWI60G1377 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 6.1e-84 314.7 202 79.7
arahy.Tifrunner.gnm1.ann1.T3IE7U Arachis hypogaea HOM05D005180 ORTHO05D006136 1.4e-83 313.5 233 71.2
SalBow6G2568 Salvia bowleyana HOM05D005180 ORTHO05D006136 2.3e-83 312.8 239 70.3
SGA_v2.0_scaffold29G12131 Striga asiatica HOM05D005180 ORTHO05D006136 2.3e-83 312.8 241 69.7
Atru.chr5.727 Acer truncatum HOM05D005180 ORTHO05D006136 3.0e-83 312.4 196 80.6
ECA240G0118 Erigeron canadensis HOM05D005180 ORTHO05D006136 5.1e-83 311.6 239 69.0
AUR62005241 Chenopodium quinoa HOM05D005180 ORTHO05D006136 6.7e-83 311.2 239 67.8
PGSC0003DMG400027389 Solanum tuberosum HOM05D005180 ORTHO05D006136 1.1e-82 310.5 242 68.2
AT5G16790 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 2.0e-82 309.7 232 72.0
CARHR196370 Cardamine hirsuta HOM05D005180 ORTHO05D006136 2.0e-82 309.7 229 69.4
Oeu032043.1 Olea europaea HOM05D005180 ORTHO05D006136 2.0e-82 309.7 204 76.5
AL6G27810 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 2.6e-82 309.3 232 72.0
Dinv35897 Davidia involucrata HOM05D005180 ORTHO05D006136 4.4e-82 308.5 228 71.9
Nn8g41146 Nelumbo nucifera HOM05D005180 ORTHO05D006136 5.7e-82 308.1 206 76.2
Os08g0160000 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 5.7e-82 308.1 211 73.9
Potri.013G082900 Populus trichocarpa HOM05D005180 ORTHO05D006136 1.3e-81 307.0 193 80.8
unitig_64.g29770 Utricularia gibba HOM05D005180 ORTHO05D006136 1.3e-81 307.0 243 66.7
EL10Ac6g14989 Beta vulgaris HOM05D005180 ORTHO05D006136 2.2e-81 306.2 239 67.8
AUR62000723 Chenopodium quinoa HOM05D005180 ORTHO05D006136 2.2e-81 306.2 239 66.9
unitig_62.g23868 Utricularia gibba HOM05D005180 ORTHO05D006136 2.8e-81 305.8 240 67.1
Aqoxy3G02241 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 3.7e-81 305.4 242 69.0
Oeu025945.2 Olea europaea HOM05D005180 ORTHO05D006136 1.1e-80 303.9 197 77.7
THA.LOC104820896 Tarenaya hassleriana HOM05D005180 ORTHO05D006136 1.1e-80 303.9 202 76.2
DCAR_016143 Daucus carota HOM05D005180 ORTHO05D006136 1.4e-80 303.5 205 74.6
Migut.D00701 Erythranthe guttata HOM05D005180 ORTHO05D006136 1.4e-80 303.5 239 69.5
Actinidia24488 Actinidia chinensis HOM05D005180 ORTHO05D006136 2.4e-80 302.8 228 71.9
Ah.04g161260 Amaranthus hybridus HOM05D005180 ORTHO05D006136 7.0e-80 301.2 239 65.7
Lj2P827T12 Lonicera japonica HOM05D005180 ORTHO05D006136 1.2e-79 300.4 199 76.4
CDE02G3757 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 1.5e-79 300.1 199 76.4
AL3G12410 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 3.5e-79 298.9 236 67.8
Sp3g02010 Schrenkiella parvula HOM05D005180 ORTHO05D006136 7.7e-79 297.7 236 68.2
PSO782G2417 Papaver somniferum HOM05D005180 ORTHO05D006136 1.3e-78 297.0 242 66.5
Carub.0003s0208 Capsella rubella HOM05D005180 ORTHO05D006136 2.9e-78 295.8 236 67.4
Thhalv10021437m.g Eutrema salsugineum HOM05D005180 ORTHO05D006136 2.9e-78 295.8 236 66.9
AT3G02950 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 5.0e-78 295.0 236 66.5
Zm00001eb403820 Zea mays HOM05D005180 ORTHO05D006136 8.5e-78 294.3 208 72.1
HPP92_017562 Vanilla planifolia HOM05D005180 ORTHO05D006136 1.5e-77 293.5 229 68.1
C05p63850 Brassica napus HOM05D005180 ORTHO05D006136 3.2e-77 292.4 236 65.7
BolC5t35050H Brassica oleracea HOM05D005180 ORTHO05D006136 3.2e-77 292.4 236 65.7
Zm00001eb001480 Zea mays HOM05D005180 ORTHO05D006136 4.2e-77 292.0 211 69.7
CARHR076980 Cardamine hirsuta HOM05D005180 ORTHO05D006136 5.5e-77 291.6 236 66.5
Aa31LG5G13450 Aethionema arabicum HOM05D005180 ORTHO05D006136 7.2e-77 291.2 241 64.7
MBI19_g22663_MAGBIO Magnolia biondii HOM05D005180 ORTHO05D006136 9.4e-77 290.8 242 65.7
A05p44170 Brassica napus HOM05D005180 ORTHO05D006136 8.0e-76 287.7 236 64.8
BraSC90t46693Z Brassica rapa HOM05D005180 ORTHO05D006136 8.0e-76 287.7 236 64.8
Os05g0569800 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 2.3e-75 286.2 244 63.1
ATR0829G067 Amborella trichopoda HOM05D005180 ORTHO05D006136 2.2e-73 279.6 243 60.9
Cpa.g.sc14.58 Carica papaya HOM05D005180 ORTHO05D006136 3.7e-73 278.9 183 77.0
Dinv16767 Davidia involucrata HOM05D005180 ORTHO05D006136 1.1e-72 277.3 210 71.0
Hund05844 Selenicereus undatus HOM05D005180 ORTHO05D006136 3.1e-72 275.8 203 69.5
Prupe.8G026900 Prunus persica HOM05D005180 ORTHO05D006136 5.3e-72 275.0 223 71.3
CDE11G0176 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 3.8e-70 268.9 178 75.8
SMO356G0075 Selaginella moellendorffii HOM05D005180 ORTHO05D006136 3.8e-70 268.9 238 59.7
Mapoly0076s0002 Marchantia polymorpha HOM05D005180 ORTHO05D006136 9.4e-69 264.2 227 62.6
AagrBONN_evm.TU.Sc2ySwM_344.1992 Anthoceros agrestis HOM05D005180 ORTHO05D006136 2.6e-66 256.1 197 67.0
MD05G1022700 Malus domestica HOM05D005180 ORTHO05D006136 4.4e-66 255.4 165 83.0
Pp3c15_21620 Physcomitrium patens HOM05D005180 ORTHO05D006136 2.2e-65 253.1 225 59.6
SHI53994 Sapria himalayana HOM05D005180 ORTHO05D006136 5.2e-59 231.9 234 56.8
Carub.0006s1501 Capsella rubella HOM05D005180 ORTHO05D006136 1.2e-58 230.7 151 77.5
MD05G1023000 Malus domestica HOM05D005180 ORTHO05D006136 4.8e-57 225.3 237 59.9
MD00G1125800 Malus domestica HOM05D005180 ORTHO05D006136 6.3e-57 224.9 133 85.7
SEGI_37847 Sequoiadendron giganteum HOM05D005180 ORTHO05D006136 2.3e-54 216.5 191 60.7
Prupe.8G027200 Prunus persica HOM05D005180 ORTHO05D006136 6.1e-52 208.4 111 92.8
CBR_g51237 Chara braunii HOM05D005180 ORTHO05D006136 2.7e-39 166.4 176 52.3
Glyma.07G081200 Glycine max HOM05D005180 ORTHO05D006136 6.6e-38 161.8 104 77.9
CBR_g4125 Chara braunii HOM05D005180 ORTHO05D006136 1.6e-36 157.1 173 50.3
FvH4_4g00100 Fragaria vesca HOM05D005180 ORTHO05D006136 8.9e-35 151.4 85 96.5
Prupe.8G026600 Prunus persica HOM05D005180 ORTHO05D006136 7.5e-34 148.3 86 83.7
MCO09G003 Micromonas commoda HOM05D005180 ORTHO05D006136 3.3e-29 132.9 188 41.5
SHI47254 Sapria himalayana HOM05D005180 ORTHO05D006136 7.3e-29 131.7 120 60.0
FAN23G1155 Fragaria x ananassa HOM05D001255 ORTHO05D011996 2.1e-23 113.6 75 85.3
FAN20G1163 Fragaria x ananassa HOM05D001255 ORTHO05D006136 6.6e-22 108.6 78 76.9
Solyc11g072180.3 Solanum lycopersicum HOM05D005180 ORTHO05D006136 3.6e-20 102.8 91 64.8
FAN23G1307 Fragaria x ananassa HOM05D005180 ORTHO05D006136 3.4e-18 96.3 57 89.5
Cre03.g182350 Chlamydomonas reinhardtii HOM05D005180 ORTHO05D006136 4.4e-18 95.9 200 32.0
SHI47253 Sapria himalayana HOM05D005180 ORTHO05D006136 7.6e-18 95.1 57 82.5
FAN23G2223 Fragaria x ananassa HOM05D001255 ORTHO05D006136 1.9e-16 90.5 51 92.2
PRCOL_00001653 Prasinoderma coloniale HOM05D005180 ORTHO05D006136 1.9e-13 80.5 219 28.3


User provided reference genes

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