Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0275711 Rosa chinensis HOM05D000622 ORTHO05D000475 4.1e-53 211.1 102 100.0
RcHm_v2.0_Chr7g0183211 Rosa chinensis HOM05D000622 ORTHO05D000475 1.7e-19 99.4 97 60.8
FAN08G2329 Fragaria x ananassa HOM05D000622 ORTHO05D000475 1.1e-18 96.7 97 58.8
FvH4_5g13730 Fragaria vesca HOM05D000622 ORTHO05D000475 3.3e-18 95.1 97 57.7
FAN13G2713 Fragaria x ananassa HOM05D000622 ORTHO05D000475 3.3e-18 95.1 97 57.7
FAN18G4294 Fragaria x ananassa HOM05D000622 ORTHO05D000475 3.3e-18 95.1 97 57.7
Prupe.5G206200 Prunus persica HOM05D000622 ORTHO05D000475 1.2e-17 93.2 97 56.7
MD06G1226000 Malus domestica HOM05D000622 ORTHO05D000475 1.1e-13 80.1 96 51.0
MD14G1212900 Malus domestica HOM05D000622 ORTHO05D000475 4.6e-12 74.7 96 47.9
Dinv17425 Davidia involucrata HOM05D000622 ORTHO05D000475 3.9e-11 71.6 100 47.0
MELO3C017229.2 Cucumis melo HOM05D000622 ORTHO05D000475 1.5e-10 69.7 95 46.3
Sed0001974 Sechium edule HOM05D000622 ORTHO05D000475 1.9e-10 69.3 91 44.0
GSVIVG01008107001 Vitis vinifera HOM05D000622 ORTHO05D000475 1.9e-10 69.3 95 42.1
ClCG06G015590 Citrullus lanatus HOM05D000622 ORTHO05D000475 5.6e-10 67.8 95 45.3
CsaV3_1G002980 Cucumis sativus L. HOM05D000622 ORTHO05D000475 1.2e-09 66.6 95 45.3
arahy.Tifrunner.gnm1.ann1.N01RGU Arachis hypogaea HOM05D000622 ORTHO05D000475 1.6e-09 66.2 100 41.0
arahy.Tifrunner.gnm1.ann1.YCZ32I Arachis hypogaea HOM05D000622 ORTHO05D000475 1.6e-09 66.2 100 41.0
CANSAT56G0997 Cannabis sativa HOM05D000622 ORTHO05D000475 1.6e-09 66.2 98 41.8
Phvul.003G184000 Phaseolus vulgaris HOM05D000622 ORTHO05D000475 6.2e-09 64.3 102 40.2
HanXRQChr08g0230481 Helianthus annuus HOM05D000622 ORTHO05D000475 8.0e-09 63.9 64 53.1
Sed0006272 Sechium edule HOM05D000622 ORTHO05D000475 1.1e-08 63.5 97 42.3
TAR629G1969 Trochodendron aralioides HOM05D000622 ORTHO05D000475 1.1e-08 63.5 100 40.0
Nn4g23441 Nelumbo nucifera HOM05D000622 ORTHO05D000475 1.4e-08 63.2 83 45.8
Glyma.17G079200 Glycine max HOM05D000622 ORTHO05D000475 1.8e-08 62.8 98 40.8
Cpa.g.sc746.3 Carica papaya HOM05D000622 ORTHO05D000475 2.3e-08 62.4 98 39.8
Dinv22771 Davidia involucrata HOM05D000622 ORTHO05D000475 2.3e-08 62.4 98 42.9
Hma1.2p1_0322F.1_g124660 Hydrangea macrophylla HOM05D000622 ORTHO05D000475 2.3e-08 62.4 90 38.9
THA.LOC104818351 Tarenaya hassleriana HOM05D000622 ORTHO05D000475 2.3e-08 62.4 60 53.3
TAR371G0311 Trochodendron aralioides HOM05D000622 ORTHO05D000475 2.3e-08 62.4 99 38.4
Phvul.008G032800 Phaseolus vulgaris HOM05D000622 ORTHO05D000475 3.1e-08 62.0 64 50.0
vmacro16491 Vaccinium macrocarpon HOM05D000622 ORTHO05D000475 3.1e-08 62.0 91 44.0
Actinidia35040 Actinidia chinensis HOM05D000622 ORTHO05D000475 4.0e-08 61.6 94 41.5
CSS0044038 Camellia sinensis var. sinensis HOM05D000622 ORTHO05D000475 4.0e-08 61.6 93 38.7
Duzib205G1978 Durio zibethinus HOM05D000622 ORTHO05D000475 8.9e-08 60.5 97 38.1
Eucgr.K02533 Eucalyptus grandis HOM05D000622 ORTHO05D000475 8.9e-08 60.5 81 43.2
COL.COLO4_24338 Corchorus olitorius HOM05D000622 ORTHO05D000475 1.2e-07 60.1 98 39.8
Haze_07738 Corylus avellana HOM05D000622 ORTHO05D000475 1.2e-07 60.1 91 44.0
Gohir.D03G096900 Gossypium hirsutum HOM05D000622 ORTHO05D000475 1.2e-07 60.1 93 38.7
Sabra15G0084200 Salix brachista HOM05D000622 ORTHO05D000475 1.2e-07 60.1 95 35.8
Thecc.03G103100 Theobroma cacao HOM05D000622 ORTHO05D000475 1.2e-07 60.1 97 38.1
VMungo1215G0311 Vigna mungo HOM05D000622 ORTHO05D000475 1.2e-07 60.1 98 40.8
Migut.K01271 Erythranthe guttata HOM05D000622 ORTHO05D000475 1.5e-07 59.7 81 45.7
Thhalv10005527m.g Eutrema salsugineum HOM05D000622 ORTHO05D000475 1.5e-07 59.7 93 35.5
Ca_18799_v3 Cicer arietinum L. HOM05D000622 ORTHO05D000475 2.0e-07 59.3 59 52.5
Cc00_g12120 Coffea canephora HOM05D000622 ORTHO05D000475 2.0e-07 59.3 96 37.5
Glyma.05G020200 Glycine max HOM05D000622 ORTHO05D000475 2.0e-07 59.3 100 39.0
QL02p067533 Quercus lobata HOM05D000622 ORTHO05D000475 2.0e-07 59.3 84 39.3
Rhsim12G0148700 Rhododendron simsii HOM05D000813 ORTHO05D004282 2.0e-07 59.3 91 44.0
Gorai.003G101700 Gossypium raimondii HOM05D000622 ORTHO05D000475 2.6e-07 58.9 93 38.7
BraA09t36367Z Brassica rapa HOM05D000622 ORTHO05D000475 3.4e-07 58.5 95 38.9
Cfa019346 Carpinus fangiana HOM05D000622 ORTHO05D000475 3.4e-07 58.5 66 50.0
CiPaw.03G088000 Carya illinoinensis HOM05D000622 ORTHO05D000475 3.4e-07 58.5 94 39.4
Ca_21765_v3 Cicer arietinum L. HOM05D000622 ORTHO05D000475 3.4e-07 58.5 97 36.1
Haze_11900 Corylus avellana HOM05D000622 ORTHO05D000475 3.4e-07 58.5 63 49.2
ECA246G2429 Erigeron canadensis HOM05D000622 ORTHO05D000475 3.4e-07 58.5 96 42.7
Sopen02g033610 Solanum pennellii HOM05D000622 ORTHO05D000475 3.4e-07 58.5 62 51.6
PGSC0003DMG400001461 Solanum tuberosum HOM05D000622 ORTHO05D000475 3.4e-07 58.5 62 51.6
AL8G37630 Arabidopsis lyrata HOM05D000622 ORTHO05D000475 4.4e-07 58.2 87 36.8
CiPaw.11G054600 Carya illinoinensis HOM05D000622 ORTHO05D000475 4.4e-07 58.2 91 40.7
Medtr4g083150 Medicago truncatula HOM05D000622 ORTHO05D000475 4.4e-07 58.2 59 52.5
arahy.Tifrunner.gnm1.ann1.E5YE70 Arachis hypogaea HOM05D000622 ORTHO05D000475 5.8e-07 57.8 62 50.0
arahy.Tifrunner.gnm1.ann1.I6685F Arachis hypogaea HOM05D000622 ORTHO05D000475 5.8e-07 57.8 62 50.0
AUR62003092 Chenopodium quinoa HOM05D000622 ORTHO05D000475 5.8e-07 57.8 62 43.5
Duzib084G0887 Durio zibethinus HOM05D000622 ORTHO05D000475 5.8e-07 57.8 97 39.2
Eucgr.B00605 Eucalyptus grandis HOM05D000622 ORTHO05D000475 5.8e-07 57.8 95 37.9
Lalb_Chr12g0197251 Lupinus albus HOM05D000622 ORTHO05D000475 5.8e-07 57.8 100 39.0
Potri.015G058700 Populus trichocarpa HOM05D000622 ORTHO05D000475 5.8e-07 57.8 91 38.5
QL10p019819 Quercus lobata HOM05D000622 ORTHO05D000475 5.8e-07 57.8 90 40.0
Carub.0008s2167 Capsella rubella HOM05D000622 ORTHO05D000475 7.5e-07 57.4 95 38.9
AUR62007909 Chenopodium quinoa HOM05D000622 ORTHO05D000475 7.5e-07 57.4 93 36.6
Nn3g17465 Nelumbo nucifera HOM05D000622 ORTHO05D000475 7.5e-07 57.4 87 43.7
AT5G60980 Arabidopsis thaliana HOM05D000622 ORTHO05D000475 9.8e-07 57.0 102 35.3
Eucgr.G02443 Eucalyptus grandis HOM05D000622 ORTHO05D000475 9.8e-07 57.0 81 42.0
FAN02G1607 Fragaria x ananassa HOM05D000622 ORTHO05D000475 9.8e-07 57.0 66 45.5
FAN14G3609 Fragaria x ananassa HOM05D000622 ORTHO05D000475 9.8e-07 57.0 66 45.5
Nitab4.5_0002957g0020 Nicotiana tabacum HOM05D000622 ORTHO05D000475 9.8e-07 57.0 88 37.5
Psat4g047640 Pisum sativum HOM05D000622 ORTHO05D000475 9.8e-07 57.0 98 35.7
TPR.G34045 Trifolium pratense HOM05D000622 ORTHO05D000475 9.8e-07 57.0 59 52.5
Aa31LG11G2300 Aethionema arabicum HOM05D000622 ORTHO05D000475 1.3e-06 56.6 91 37.4
ECA246G0234 Erigeron canadensis HOM05D000622 ORTHO05D000475 1.3e-06 56.6 63 47.6
Lalb_Chr09g0328991 Lupinus albus HOM05D000622 ORTHO05D000475 1.3e-06 56.6 59 52.5
MBI16_g10834_MAGBIO Magnolia biondii HOM05D000622 ORTHO05D000475 1.3e-06 56.6 101 38.6
Manes.01G096400 Manihot esculenta HOM05D000622 ORTHO05D000475 1.3e-06 56.6 62 50.0
Manes.06G083600 Manihot esculenta HOM05D000622 ORTHO05D000475 1.3e-06 56.6 95 37.9
SEGI_09153 Sequoiadendron giganteum HOM05D000622 ORTHO05D000475 1.3e-06 56.6 89 38.2
TAR633G2797 Trochodendron aralioides HOM05D000622 ORTHO05D000475 1.3e-06 56.6 64 46.9
vmacro05640 Vaccinium macrocarpon HOM05D000622 ORTHO05D000475 1.3e-06 56.6 64 46.9
ATR0561G075 Amborella trichopoda HOM05D000622 ORTHO05D000475 1.7e-06 56.2 65 44.6
FvH4_6g46800 Fragaria vesca HOM05D000622 ORTHO05D000475 1.7e-06 56.2 66 45.5
FAN09G3898 Fragaria x ananassa HOM05D000622 ORTHO05D000475 1.7e-06 56.2 66 45.5
Hma1.2p1_0060F.1_g033000 Hydrangea macrophylla HOM05D000622 ORTHO05D000475 1.7e-06 56.2 98 37.8
A09p07180 Brassica napus HOM05D000622 ORTHO05D000475 2.2e-06 55.8 62 46.8
Lj4g0001243 Lotus japonicus HOM05D000622 ORTHO05D000475 2.2e-06 55.8 98 35.7
Psat7g133680 Pisum sativum HOM05D000622 ORTHO05D000475 2.2e-06 55.8 90 37.8
Potri.017G094600 Populus trichocarpa HOM05D000622 ORTHO05D000475 2.2e-06 55.8 62 45.2
unitig_0.g1788 Utricularia gibba HOM05D000622 ORTHO05D000475 2.2e-06 55.8 87 40.2
GSVIVG01032909001 Vitis vinifera HOM05D000622 ORTHO05D000475 2.2e-06 55.8 100 37.0
BcaNung06898 Brassica carinata HOM05D000622 ORTHO05D000475 2.9e-06 55.5 93 34.4
CANSAT64G2708 Cannabis sativa HOM05D000622 ORTHO05D000475 2.9e-06 55.5 90 38.9
FAN05G0429 Fragaria x ananassa HOM05D000622 ORTHO05D000475 2.9e-06 55.5 66 45.5
HanXRQChr17g0550231 Helianthus annuus HOM05D000622 ORTHO05D000475 2.9e-06 55.5 58 50.0
VMungo1383G2491 Vigna mungo HOM05D000622 ORTHO05D000475 2.9e-06 55.5 60 48.3
Atru.chr9.556 Acer truncatum HOM05D000622 ORTHO05D000475 3.7e-06 55.1 94 38.3
BcaC04g23468 Brassica carinata HOM05D000622 ORTHO05D000475 3.7e-06 55.1 95 37.9
C09p08020 Brassica napus HOM05D000622 ORTHO05D000475 3.7e-06 55.1 95 37.9
BolC9t53716H Brassica oleracea HOM05D000622 ORTHO05D000475 3.7e-06 55.1 95 37.9
Cfa007672 Carpinus fangiana HOM05D000622 ORTHO05D000475 3.7e-06 55.1 84 40.5
Gohir.A11G033400 Gossypium hirsutum HOM05D000622 ORTHO05D000475 3.7e-06 55.1 69 42.0
Gohir.D11G036800 Gossypium hirsutum HOM05D000622 ORTHO05D000475 3.7e-06 55.1 97 33.0
Gohir.D12G186200 Gossypium hirsutum HOM05D000622 ORTHO05D000475 3.7e-06 55.1 95 35.8
Gorai.007G039600 Gossypium raimondii HOM05D000622 ORTHO05D000475 3.7e-06 55.1 97 33.0
Hund13143 Selenicereus undatus HOM05D000622 ORTHO05D000475 3.7e-06 55.1 82 39.0
THA.LOC104805514 Tarenaya hassleriana HOM05D000622 ORTHO05D000475 3.7e-06 55.1 69 43.5
HPP92_006217 Vanilla planifolia HOM05D000622 ORTHO05D000475 3.7e-06 55.1 59 49.2
CARHR274690 Cardamine hirsuta HOM05D000622 ORTHO05D000475 4.9e-06 54.7 57 47.4
FAN07G1729 Fragaria x ananassa HOM05D000622 ORTHO05D000475 4.9e-06 54.7 67 46.3
FAN12G0735 Fragaria x ananassa HOM05D000622 ORTHO05D000475 4.9e-06 54.7 67 46.3
Glyma.07G225500 Glycine max HOM05D000622 ORTHO05D000475 4.9e-06 54.7 59 49.2
Gohir.A12G183100 Gossypium hirsutum HOM05D000622 ORTHO05D000475 4.9e-06 54.7 97 36.1
Lsat_1_v5_gn_5_22601 Lactuca sativa HOM05D000622 ORTHO05D000475 4.9e-06 54.7 58 50.0
MD09G1067300 Malus domestica HOM05D000622 ORTHO05D000475 4.9e-06 54.7 59 45.8
Nitab4.5_0000212g0280 Nicotiana tabacum HOM05D000622 ORTHO05D000475 4.9e-06 54.7 39 61.5
Psat0s2539g0040 Pisum sativum HOM05D000622 ORTHO05D000475 4.9e-06 54.7 39 64.1
THA.LOC104805200 Tarenaya hassleriana HOM05D000622 ORTHO05D000475 4.9e-06 54.7 63 47.6
TPR.G2032 Trifolium pratense HOM05D000622 ORTHO05D000475 4.9e-06 54.7 97 35.1
TAR374G1402 Trochodendron aralioides HOM05D000622 ORTHO05D000475 4.9e-06 54.7 107 36.4
BraA02t09078Z Brassica rapa HOM05D000622 ORTHO05D000475 6.4e-06 54.3 107 34.6
CiPaw.04G055200 Carya illinoinensis HOM05D000622 ORTHO05D000475 6.4e-06 54.3 69 44.9
DCAR_011564 Daucus carota HOM05D000622 ORTHO05D000475 6.4e-06 54.3 68 39.7
FAN22G2000 Fragaria x ananassa HOM05D000622 ORTHO05D000475 6.4e-06 54.3 67 46.3
Glyma.20G025500 Glycine max HOM05D000622 ORTHO05D000475 6.4e-06 54.3 59 49.2
Manes.02G055500 Manihot esculenta HOM05D000622 ORTHO05D000475 6.4e-06 54.3 59 45.8
Atru.chr11.1619 Acer truncatum HOM05D000622 ORTHO05D000475 8.3e-06 53.9 57 49.1
Aqoxy3G03678 Aquilegia oxysepala HOM05D000622 ORTHO05D000475 8.3e-06 53.9 60 45.0
CSS0045307 Camellia sinensis var. sinensis HOM05D000622 ORTHO05D000475 8.3e-06 53.9 92 39.1
FvH4_4g29890 Fragaria vesca HOM05D000622 ORTHO05D000475 8.3e-06 53.9 67 46.3
Gorai.008G199600 Gossypium raimondii HOM05D000622 ORTHO05D000475 8.3e-06 53.9 97 36.1
Lj1g0024360 Lotus japonicus HOM05D000622 ORTHO05D000475 8.3e-06 53.9 89 40.4


User provided reference genes

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