Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0271661 Rosa chinensis HOM05D004284 ORTHO05D006610 3.1e-83 311.6 144 100.0
RcHm_v2.0_Chr6g0268371 Rosa chinensis HOM05D004284 ORTHO05D006610 5.2e-78 294.3 144 95.1
FAN15G2871 Fragaria x ananassa HOM05D004284 ORTHO05D006610 1.2e-77 293.1 144 95.1
FAN20G0619 Fragaria x ananassa HOM05D004284 ORTHO05D006610 1.5e-77 292.7 144 94.4
FvH4_2g10690 Fragaria vesca HOM05D004284 ORTHO05D006610 9.7e-77 290.0 144 93.8
Prupe.8G082800 Prunus persica HOM05D004284 ORTHO05D006610 3.5e-74 281.6 144 89.6
QL11p046610 Quercus lobata HOM05D004284 ORTHO05D006610 4.5e-74 281.2 143 89.5
MD10G1062000 Malus domestica HOM05D004284 ORTHO05D006610 5.9e-74 280.8 144 89.6
Potri.009G125500 Populus trichocarpa HOM05D004284 ORTHO05D006610 1.7e-73 279.3 144 89.6
Thecc.02G073500 Theobroma cacao HOM05D004284 ORTHO05D006610 5.0e-73 277.7 144 88.9
Ca_15330_v3 Cicer arietinum L. HOM05D004284 ORTHO05D006610 1.1e-72 276.6 144 86.8
TWI75G0546 Tripterygium wilfordii HOM05D004284 ORTHO05D006610 1.1e-72 276.6 144 86.1
GSVIVG01024158001 Vitis vinifera HOM05D004284 ORTHO05D006610 1.1e-72 276.6 144 87.5
Lalb_Chr11g0061291 Lupinus albus HOM05D004284 ORTHO05D006610 1.5e-72 276.2 144 86.8
vmacro02047 Vaccinium macrocarpon HOM05D004284 ORTHO05D006610 1.5e-72 276.2 144 86.1
COL.COLO4_10617 Corchorus olitorius HOM05D004284 ORTHO05D006610 2.5e-72 275.4 144 87.5
Sabra09G0096500 Salix brachista HOM05D004284 ORTHO05D006610 4.2e-72 274.6 144 88.2
THA.LOC104824786 Tarenaya hassleriana HOM05D004284 ORTHO05D006610 4.2e-72 274.6 144 86.8
Lj1g0012810 Lotus japonicus HOM05D004284 ORTHO05D006610 5.5e-72 274.2 144 86.1
Zm00001eb419910 Zea mays HOM05D004284 ORTHO05D006610 7.2e-72 273.9 144 86.8
arahy.Tifrunner.gnm1.ann1.6AD899 Arachis hypogaea HOM05D004284 ORTHO05D006610 9.4e-72 273.5 144 85.4
CiPaw.05G074300 Carya illinoinensis HOM05D004284 ORTHO05D006610 9.4e-72 273.5 144 86.1
Medtr3g117580 Medicago truncatula HOM05D004284 ORTHO05D006610 9.4e-72 273.5 144 86.1
CAN.G1329.2 Capsicum annuum HOM05D004284 ORTHO05D006610 1.6e-71 272.7 144 86.1
Ciclev10027934m.g Citrus clementina HOM05D004284 ORTHO05D006610 1.6e-71 272.7 144 86.1
Rhsim11G0184600 Rhododendron simsii HOM05D004284 ORTHO05D006610 1.6e-71 272.7 144 84.0
arahy.Tifrunner.gnm1.ann1.835YPG Arachis hypogaea HOM05D004284 ORTHO05D006610 2.1e-71 272.3 144 84.7
Glyma.04G007400 Glycine max HOM05D004284 ORTHO05D006610 2.1e-71 272.3 144 85.4
TPR.G32210 Trifolium pratense HOM05D004284 ORTHO05D006610 2.1e-71 272.3 144 85.4
Psat5g003800 Pisum sativum HOM05D004284 ORTHO05D006610 2.7e-71 271.9 144 84.7
MSTRG.20021 Avicennia marina HOM05D004284 ORTHO05D006610 3.6e-71 271.6 144 86.1
Duzib052G1007 Durio zibethinus HOM05D004284 ORTHO05D006610 3.6e-71 271.6 144 86.1
MBI05_g26520_MAGBIO Magnolia biondii HOM05D004284 ORTHO05D006610 3.6e-71 271.6 144 87.5
SGA_v2.0_scaffold58G20431 Striga asiatica HOM05D004284 ORTHO05D006610 3.6e-71 271.6 144 83.3
TWI79G0275 Tripterygium wilfordii HOM05D004284 ORTHO05D006610 3.6e-71 271.6 144 84.0
TWI79G1346 Tripterygium wilfordii HOM05D004284 ORTHO05D006610 3.6e-71 271.6 144 84.0
Actinidia00120 Actinidia chinensis HOM05D004284 ORTHO05D006610 6.1e-71 270.8 144 86.8
Actinidia20651 Actinidia chinensis HOM05D004284 ORTHO05D006610 6.1e-71 270.8 144 86.8
Gohir.D13G090800 Gossypium hirsutum HOM05D004284 ORTHO05D006610 6.1e-71 270.8 144 86.1
Gorai.001G243900 Gossypium raimondii HOM05D004284 ORTHO05D006610 6.1e-71 270.8 144 86.1
Manes.11G081200 Manihot esculenta HOM05D004284 ORTHO05D006610 6.1e-71 270.8 144 84.0
Os04g0117600 Oryza sativa ssp. japonica HOM05D004284 ORTHO05D006610 6.1e-71 270.8 144 85.4
Haze_02227 Corylus avellana HOM05D004284 ORTHO05D006610 8.0e-71 270.4 144 85.4
Duzib132G0815 Durio zibethinus HOM05D004284 ORTHO05D006610 8.0e-71 270.4 144 86.1
Phvul.009G002300 Phaseolus vulgaris HOM05D004284 ORTHO05D006610 8.0e-71 270.4 144 86.1
Nitab4.5_0002096g0020 Nicotiana tabacum HOM05D004284 ORTHO05D006610 1.0e-70 270.0 144 84.7
Nitab4.5_0010885g0030 Nicotiana tabacum HOM05D004284 ORTHO05D006610 1.0e-70 270.0 144 84.7
Oeu055646.2 Olea europaea HOM05D004284 ORTHO05D006610 1.0e-70 270.0 144 84.7
Atru.chr5.3162 Acer truncatum HOM05D004284 ORTHO05D006610 1.4e-70 269.6 144 85.4
Atru.chr5.3174 Acer truncatum HOM05D004284 ORTHO05D006610 1.4e-70 269.6 144 85.4
Eucgr.G01740 Eucalyptus grandis HOM05D004284 ORTHO05D006610 1.4e-70 269.6 144 86.1
Gohir.A13G086645 Gossypium hirsutum HOM05D004284 ORTHO05D006610 1.4e-70 269.6 144 85.4
PGR042G3704 Punica granatum HOM05D004284 ORTHO05D006610 1.4e-70 269.6 144 86.1
Cpa.g.sc150.5 Carica papaya HOM05D004284 ORTHO05D006610 1.8e-70 269.2 144 84.7
MELO3C013406.2 Cucumis melo HOM05D004284 ORTHO05D006610 2.3e-70 268.9 144 84.0
Cfa005121 Carpinus fangiana HOM05D004284 ORTHO05D006610 4.0e-70 268.1 144 84.7
AL7G10770 Arabidopsis lyrata HOM05D004284 ORTHO05D006610 5.2e-70 267.7 144 84.7
AT4G38890 Arabidopsis thaliana HOM05D004284 ORTHO05D006610 5.2e-70 267.7 144 84.7
BcaNung04214 Brassica carinata HOM05D004284 ORTHO05D006610 6.8e-70 267.3 144 84.7
C01p00170 Brassica napus HOM05D004284 ORTHO05D006610 6.8e-70 267.3 144 84.7
BolC1t00022H Brassica oleracea HOM05D004284 ORTHO05D006610 6.8e-70 267.3 144 84.7
BraA01t00017Z Brassica rapa HOM05D004284 ORTHO05D006610 6.8e-70 267.3 144 84.7
Carub.0007s0074 Capsella rubella HOM05D004284 ORTHO05D006610 6.8e-70 267.3 144 84.7
CARHR247870 Cardamine hirsuta HOM05D004284 ORTHO05D006610 6.8e-70 267.3 144 84.7
CsaV3_7G000530 Cucumis sativus L. HOM05D004284 ORTHO05D006610 6.8e-70 267.3 144 83.3
Thhalv10024574m.g Eutrema salsugineum HOM05D004284 ORTHO05D006610 6.8e-70 267.3 144 84.7
Lj5A188T39 Lonicera japonica HOM05D004284 ORTHO05D006610 6.8e-70 267.3 144 84.0
Sp7g36950 Schrenkiella parvula HOM05D004284 ORTHO05D006610 6.8e-70 267.3 144 84.7
Aa31LG6G16360 Aethionema arabicum HOM05D004284 ORTHO05D006610 8.8e-70 266.9 144 84.0
Nn6g32279 Nelumbo nucifera HOM05D004284 ORTHO05D006610 8.8e-70 266.9 144 81.9
Dinv23446 Davidia involucrata HOM05D004284 ORTHO05D006610 1.5e-69 266.2 144 85.4
A01p00130 Brassica napus HOM05D004284 ORTHO05D006610 2.0e-69 265.8 144 84.0
CANSAT11G1394 Cannabis sativa HOM05D004284 ORTHO05D006610 2.0e-69 265.8 144 84.7
CSS0028050 Camellia sinensis var. sinensis HOM05D004284 ORTHO05D006610 2.6e-69 265.4 144 84.0
TAR376G0598 Trochodendron aralioides HOM05D004284 ORTHO05D006610 9.8e-69 263.5 144 83.3
CSS0013523 Camellia sinensis var. sinensis HOM05D004284 ORTHO05D006610 2.2e-68 262.3 144 83.3
CSS0041983 Camellia sinensis var. sinensis HOM05D004284 ORTHO05D006610 2.2e-68 262.3 144 83.3
Peaxi162Scf00362g11100 Petunia axillaris HOM05D004284 ORTHO05D006610 2.8e-68 261.9 144 83.3
Hund00174 Selenicereus undatus HOM05D004284 ORTHO05D006610 2.8e-68 261.9 144 81.9
Hund00182 Selenicereus undatus HOM05D004284 ORTHO05D006610 2.8e-68 261.9 144 81.9
PGSC0003DMG400001658 Solanum tuberosum HOM05D004284 ORTHO05D006610 2.8e-68 261.9 144 80.6
Migut.B00123 Erythranthe guttata HOM05D004284 ORTHO05D006610 8.3e-68 260.4 144 80.6
Solyc01g110490.4 Solanum lycopersicum HOM05D004284 ORTHO05D006610 8.3e-68 260.4 144 79.2
Sopen01g052620 Solanum pennellii HOM05D004284 ORTHO05D006610 8.3e-68 260.4 144 79.2
Cc02_g16820 Coffea canephora HOM05D004284 ORTHO05D006610 1.4e-67 259.6 144 79.9
Aqoxy3G00712 Aquilegia oxysepala HOM05D004284 ORTHO05D006610 1.8e-67 259.2 144 81.9
Sed0001411 Sechium edule HOM05D004284 ORTHO05D006610 1.8e-67 259.2 144 81.2
EL10Ac9g21612 Beta vulgaris HOM05D004284 ORTHO05D006610 4.1e-67 258.1 144 80.6
HanXRQChr17g0557281 Helianthus annuus HOM05D004284 ORTHO05D006610 9.1e-67 256.9 144 81.2
CDE02G2842 Ceratophyllum demersum HOM05D004284 ORTHO05D006610 2.7e-66 255.4 144 79.9
DCAR_022791 Daucus carota HOM05D004284 ORTHO05D006610 4.5e-66 254.6 144 79.9
Lsat_1_v5_gn_8_126921 Lactuca sativa HOM05D004284 ORTHO05D006610 5.9e-66 254.2 144 79.2
SEGI_09605 Sequoiadendron giganteum HOM05D004284 ORTHO05D006610 5.9e-66 254.2 144 78.5
ECA233G5694 Erigeron canadensis HOM05D004284 ORTHO05D006610 2.3e-65 252.3 144 80.6
AUR62010367 Chenopodium quinoa HOM05D004284 ORTHO05D006610 5.0e-65 251.1 144 78.5
PSO541G2222 Papaver somniferum HOM05D004284 ORTHO05D006610 5.0e-65 251.1 144 78.5
PSO675G4636 Papaver somniferum HOM05D004284 ORTHO05D006610 5.0e-65 251.1 144 77.8
AUR62016852 Chenopodium quinoa HOM05D004284 ORTHO05D006610 6.5e-65 250.8 144 78.5
Pp3c4_14410 Physcomitrium patens HOM05D004284 ORTHO05D006610 2.5e-64 248.8 144 79.2
ClCG02G004440 Citrullus lanatus HOM05D004284 ORTHO05D006610 2.1e-63 245.7 144 80.6
SMO119G0149 Selaginella moellendorffii HOM05D004284 ORTHO05D006610 5.2e-62 241.1 144 75.0
AagrBONN_evm.TU.Sc2ySwM_228.2393 Anthoceros agrestis HOM05D004284 ORTHO05D006610 6.8e-62 240.7 144 76.4
Ah.01g018640 Amaranthus hybridus HOM05D004284 ORTHO05D006610 2.8e-60 235.3 127 83.5
Mapoly0159s0020 Marchantia polymorpha HOM05D004284 ORTHO05D006610 8.3e-60 233.8 144 71.5
CBR_g29609 Chara braunii HOM05D004284 ORTHO05D006610 1.2e-58 229.9 145 71.7
VMungo1309G1744 Vigna mungo HOM05D004284 ORTHO05D006610 4.7e-55 218.0 109 85.3
HPP92_014972 Vanilla planifolia HOM05D004284 ORTHO05D006610 1.0e-54 216.9 121 81.0
Sc18g0005440 Simmondsia chinensis HOM05D004284 ORTHO05D006610 8.9e-54 213.8 106 86.8
vmacro22697 Vaccinium macrocarpon HOM05D004284 ORTHO05D006610 2.4e-51 205.7 110 84.5
Cre04.g229948 Chlamydomonas reinhardtii HOM05D004284 ORTHO05D006610 1.7e-49 199.5 143 62.2
Haze_26610 Corylus avellana HOM05D004284 ORTHO05D006610 5.0e-49 198.0 141 59.6
MCO09G016 Micromonas commoda HOM05D004284 ORTHO05D006610 9.5e-48 193.7 139 61.9
MCO16G514 Micromonas commoda HOM05D004284 ORTHO05D006610 2.6e-45 185.7 138 61.6
PRCOL_00002812 Prasinoderma coloniale HOM05D004284 ORTHO05D006610 2.1e-42 176.0 137 59.9
Cfa023181 Carpinus fangiana HOM05D004284 ORTHO05D006610 5.0e-41 171.4 141 53.2
ATR0147G008 Amborella trichopoda HOM05D004284 ORTHO05D006610 2.3e-38 162.5 94 79.8
RcHm_v2.0_Chr6g0268461 Rosa chinensis HOM05D004284 ORTHO05D006610 1.4e-35 153.3 70 97.1
MD05G1054400 Malus domestica HOM05D004284 ORTHO05D006610 1.2e-31 140.2 144 54.2
Actinidia15945 Actinidia chinensis HOM05D004284 ORTHO05D006610 3.6e-31 138.7 78 84.6
Actinidia27849 Actinidia chinensis HOM05D004284 ORTHO05D006610 1.9e-24 116.3 57 89.5
Gorai.004G070900 Gossypium raimondii HOM05D004284 ORTHO05D006610 3.3e-24 115.5 70 74.3
CSS0003810 Camellia sinensis var. sinensis HOM05D004284 ORTHO05D006610 4.2e-19 98.6 51 80.4
CSS0015842 Camellia sinensis var. sinensis HOM05D004284 ORTHO05D003107 4.2e-19 98.6 51 80.4
CSS0029377 Camellia sinensis var. sinensis HOM05D004284 ORTHO05D003107 1.2e-18 97.1 51 78.4
SHI05636 Sapria himalayana HOM05D004284 ORTHO05D006610 1.4e-14 83.6 40 82.5
Actinidia15946 Actinidia chinensis HOM05D004284 ORTHO05D019443 2.8e-07 59.3 27 88.9
CSS0011136 Camellia sinensis var. sinensis HOM05D004284 ORTHO05D003107 4.8e-07 58.5 27 88.9
Sabra04G0110100 Salix brachista HOM05D004284 ORTHO05D006610 2.4e-06 56.2 27 88.9
Cre10.g423400 Chlamydomonas reinhardtii HOM05D004284 ORTHO05D044199 3.1e-06 55.8 71 38.0


User provided reference genes

Program Settings