Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0271641 Rosa chinensis HOM05D004284 ORTHO05D006610 2.5e-76 288.9 167 100.0
RcHm_v2.0_Chr6g0268371 Rosa chinensis HOM05D004284 ORTHO05D006610 2.6e-73 278.9 140 97.9
FAN20G0619 Fragaria x ananassa HOM05D004284 ORTHO05D006610 6.0e-62 241.1 140 84.3
FvH4_2g10690 Fragaria vesca HOM05D004284 ORTHO05D006610 3.0e-61 238.8 139 84.2
FAN15G2871 Fragaria x ananassa HOM05D004284 ORTHO05D006610 8.7e-61 237.3 139 83.5
FAN24G2266 Fragaria x ananassa HOM05D004284 ORTHO05D006610 2.2e-56 222.6 168 69.6
Prupe.8G082800 Prunus persica HOM05D004284 ORTHO05D006610 1.6e-51 206.5 141 72.3
RcHm_v2.0_Chr6g0268431 Rosa chinensis HOM05D004284 ORTHO05D006610 1.6e-46 189.9 99 93.9
MD10G1062000 Malus domestica HOM05D004284 ORTHO05D006610 1.9e-44 183.0 141 67.4
QL11p046610 Quercus lobata HOM05D004284 ORTHO05D006610 8.8e-37 157.5 142 59.9
CiPaw.05G074300 Carya illinoinensis HOM05D004284 ORTHO05D006610 8.2e-35 151.0 142 54.9
Haze_02227 Corylus avellana HOM05D004284 ORTHO05D006610 9.1e-34 147.5 123 58.5
Dinv23446 Davidia involucrata HOM05D004284 ORTHO05D006610 2.0e-33 146.4 150 49.3
Cfa005121 Carpinus fangiana HOM05D004284 ORTHO05D006610 7.7e-33 144.4 134 55.2
Ciclev10027934m.g Citrus clementina HOM05D004284 ORTHO05D006610 1.7e-32 143.3 136 52.9
CANSAT11G1394 Cannabis sativa HOM05D004284 ORTHO05D006610 6.5e-32 141.4 142 52.1
CsaV3_7G000530 Cucumis sativus L. HOM05D004284 ORTHO05D006610 6.5e-32 141.4 141 51.1
Manes.11G081200 Manihot esculenta HOM05D004284 ORTHO05D006610 6.5e-32 141.4 133 53.4
Atru.chr5.3162 Acer truncatum HOM05D004284 ORTHO05D006610 8.5e-32 141.0 137 52.6
Atru.chr5.3174 Acer truncatum HOM05D004284 ORTHO05D006610 8.5e-32 141.0 137 52.6
Lj1g0012810 Lotus japonicus HOM05D004284 ORTHO05D006610 9.4e-31 137.5 141 50.4
TWI75G0546 Tripterygium wilfordii HOM05D004284 ORTHO05D006610 9.4e-31 137.5 120 55.8
ClCG02G004440 Citrullus lanatus HOM05D004284 ORTHO05D006610 2.7e-30 136.0 141 48.9
Sed0001411 Sechium edule HOM05D004284 ORTHO05D006610 2.7e-30 136.0 141 49.6
MD05G1054400 Malus domestica HOM05D004284 ORTHO05D006610 1.4e-29 133.7 79 78.5
TAR376G0598 Trochodendron aralioides HOM05D004284 ORTHO05D006610 2.3e-29 132.9 141 48.2
TWI79G1346 Tripterygium wilfordii HOM05D004284 ORTHO05D006610 3.9e-29 132.1 121 53.7
MELO3C013406.2 Cucumis melo HOM05D004284 ORTHO05D006610 5.1e-29 131.7 119 56.3
TWI79G0275 Tripterygium wilfordii HOM05D004284 ORTHO05D006610 1.1e-28 130.6 121 53.7
arahy.Tifrunner.gnm1.ann1.835YPG Arachis hypogaea HOM05D004284 ORTHO05D006610 1.5e-28 130.2 142 47.2
Nitab4.5_0010885g0030 Nicotiana tabacum HOM05D004284 ORTHO05D006610 2.0e-28 129.8 140 47.9
COL.COLO4_10617 Corchorus olitorius HOM05D004284 ORTHO05D006610 2.6e-28 129.4 150 49.3
arahy.Tifrunner.gnm1.ann1.6AD899 Arachis hypogaea HOM05D004284 ORTHO05D006610 4.4e-28 128.6 142 47.2
Nitab4.5_0002096g0020 Nicotiana tabacum HOM05D004284 ORTHO05D006610 4.4e-28 128.6 140 47.1
Rhsim11G0184600 Rhododendron simsii HOM05D004284 ORTHO05D006610 5.7e-28 128.3 146 51.4
GSVIVG01024158001 Vitis vinifera HOM05D004284 ORTHO05D006610 5.7e-28 128.3 142 48.6
Thecc.02G073500 Theobroma cacao HOM05D004284 ORTHO05D006610 7.4e-28 127.9 141 48.9
Eucgr.G01740 Eucalyptus grandis HOM05D004284 ORTHO05D006610 1.3e-27 127.1 140 48.6
Lj5A188T39 Lonicera japonica HOM05D004284 ORTHO05D006610 1.3e-27 127.1 131 49.6
DCAR_022791 Daucus carota HOM05D004284 ORTHO05D006610 3.7e-27 125.6 146 46.6
Glyma.04G007400 Glycine max HOM05D004284 ORTHO05D006610 3.7e-27 125.6 143 46.2
Duzib052G1007 Durio zibethinus HOM05D004284 ORTHO05D006610 8.2e-27 124.4 140 45.7
MSTRG.20021 Avicennia marina HOM05D004284 ORTHO05D006610 1.1e-26 124.0 138 47.8
Actinidia00120 Actinidia chinensis HOM05D004284 ORTHO05D006610 2.4e-26 122.9 132 50.0
Actinidia20651 Actinidia chinensis HOM05D004284 ORTHO05D006610 2.4e-26 122.9 132 50.0
CSS0013523 Camellia sinensis var. sinensis HOM05D004284 ORTHO05D006610 3.1e-26 122.5 142 45.8
CSS0041983 Camellia sinensis var. sinensis HOM05D004284 ORTHO05D006610 3.1e-26 122.5 140 43.6
Hund00174 Selenicereus undatus HOM05D004284 ORTHO05D006610 3.1e-26 122.5 130 45.4
Nn6g32279 Nelumbo nucifera HOM05D004284 ORTHO05D006610 6.9e-26 121.3 131 46.6
Sabra09G0096500 Salix brachista HOM05D004284 ORTHO05D006610 6.9e-26 121.3 129 51.2
Hund00182 Selenicereus undatus HOM05D004284 ORTHO05D006610 6.9e-26 121.3 130 45.4
QL02p020532 Quercus lobata HOM05D004284 ORTHO05D006610 9.1e-26 120.9 81 70.4
QL02p050982 Quercus lobata HOM05D004284 ORTHO05D006610 9.1e-26 120.9 81 70.4
vmacro02047 Vaccinium macrocarpon HOM05D004284 ORTHO05D006610 9.1e-26 120.9 143 45.5
Lsat_1_v5_gn_8_126921 Lactuca sativa HOM05D004284 ORTHO05D006610 2.0e-25 119.8 133 48.9
Duzib132G0815 Durio zibethinus HOM05D004284 ORTHO05D006610 2.6e-25 119.4 121 53.7
Oeu055646.2 Olea europaea HOM05D004284 ORTHO05D006610 4.5e-25 118.6 140 45.0
Migut.B00123 Erythranthe guttata HOM05D004284 ORTHO05D006610 5.9e-25 118.2 136 43.4
Peaxi162Scf00362g11100 Petunia axillaris HOM05D004284 ORTHO05D006610 5.9e-25 118.2 145 44.1
PGR042G3704 Punica granatum HOM05D004284 ORTHO05D006610 1.3e-24 117.1 110 52.7
Gohir.D13G090800 Gossypium hirsutum HOM05D004284 ORTHO05D006610 1.7e-24 116.7 125 50.4
Potri.009G125500 Populus trichocarpa HOM05D004284 ORTHO05D006610 1.7e-24 116.7 133 48.1
Gohir.A13G086645 Gossypium hirsutum HOM05D004284 ORTHO05D006610 2.9e-24 115.9 140 43.6
Sc18g0005440 Simmondsia chinensis HOM05D004284 ORTHO05D006610 2.9e-24 115.9 123 51.2
Gorai.001G243900 Gossypium raimondii HOM05D004284 ORTHO05D006610 3.8e-24 115.5 125 49.6
ECA233G5694 Erigeron canadensis HOM05D004284 ORTHO05D006610 5.0e-24 115.2 114 53.5
Sopen01g052620 Solanum pennellii HOM05D004284 ORTHO05D006610 5.0e-24 115.2 130 46.9
Gorai.004G070900 Gossypium raimondii HOM05D004284 ORTHO05D006610 6.5e-24 114.8 123 49.6
Cpa.g.sc150.6 Carica papaya HOM05D004284 ORTHO05D006610 8.5e-24 114.4 118 50.0
Solyc01g110490.4 Solanum lycopersicum HOM05D004284 ORTHO05D006610 8.5e-24 114.4 130 46.9
ATR0147G023 Amborella trichopoda HOM05D004284 ORTHO05D006610 1.1e-23 114.0 97 56.7
SGA_v2.0_scaffold58G20431 Striga asiatica HOM05D004284 ORTHO05D006610 7.2e-23 111.3 139 46.8
PGSC0003DMG400001658 Solanum tuberosum HOM05D004284 ORTHO05D006610 1.2e-22 110.5 130 46.2
CAN.G1329.2 Capsicum annuum HOM05D004284 ORTHO05D006610 3.6e-22 109.0 100 50.0
Phvul.009G002300 Phaseolus vulgaris HOM05D004284 ORTHO05D006610 3.6e-22 109.0 143 43.4
C01p00170 Brassica napus HOM05D004284 ORTHO05D006610 4.7e-22 108.6 112 48.2
Sp7g36950 Schrenkiella parvula HOM05D004284 ORTHO05D006610 4.7e-22 108.6 133 45.9
Aa31LG6G16360 Aethionema arabicum HOM05D004284 ORTHO05D006610 6.1e-22 108.2 138 45.7
AUR62016852 Chenopodium quinoa HOM05D004284 ORTHO05D006610 6.1e-22 108.2 112 48.2
HanXRQChr17g0557281 Helianthus annuus HOM05D004284 ORTHO05D006610 6.1e-22 108.2 123 52.0
TPR.G32210 Trifolium pratense HOM05D004284 ORTHO05D006610 6.1e-22 108.2 159 40.9
Ah.01g018640 Amaranthus hybridus HOM05D004284 ORTHO05D006610 8.0e-22 107.8 141 41.8
AL7G10770 Arabidopsis lyrata HOM05D004284 ORTHO05D006610 1.0e-21 107.5 133 45.9
MBI05_g26520_MAGBIO Magnolia biondii HOM05D004284 ORTHO05D006610 2.3e-21 106.3 125 46.4
BolC1t00022H Brassica oleracea HOM05D004284 ORTHO05D006610 3.0e-21 105.9 146 41.8
Thhalv10024574m.g Eutrema salsugineum HOM05D004284 ORTHO05D006610 6.7e-21 104.8 139 44.6
CARHR247870 Cardamine hirsuta HOM05D004284 ORTHO05D006610 8.8e-21 104.4 131 45.0
THA.LOC104824786 Tarenaya hassleriana HOM05D004284 ORTHO05D006610 2.6e-20 102.8 130 45.4
EL10Ac9g21612 Beta vulgaris HOM05D004284 ORTHO05D006610 4.4e-20 102.1 139 38.8
Carub.0007s0074 Capsella rubella HOM05D004284 ORTHO05D006610 4.4e-20 102.1 121 44.6
AT4G38890 Arabidopsis thaliana HOM05D004284 ORTHO05D006610 5.7e-20 101.7 136 43.4
A01p00130 Brassica napus HOM05D004284 ORTHO05D006610 7.4e-20 101.3 111 46.8
SHI05642 Sapria himalayana HOM05D004284 ORTHO05D006610 9.7e-20 100.9 80 53.8
BraA01t00017Z Brassica rapa HOM05D004284 ORTHO05D006610 2.2e-19 99.8 111 45.9
Ca_15330_v3 Cicer arietinum L. HOM05D004284 ORTHO05D006610 2.2e-19 99.8 104 51.0
PSO675G4636 Papaver somniferum HOM05D004284 ORTHO05D006610 4.8e-19 98.6 97 50.5
PSO541G2222 Papaver somniferum HOM05D004284 ORTHO05D006610 1.1e-18 97.4 97 50.5
Os04g0117600 Oryza sativa ssp. japonica HOM05D004284 ORTHO05D006610 1.4e-18 97.1 109 48.6
Zm00001eb419910 Zea mays HOM05D004284 ORTHO05D006610 1.4e-18 97.1 131 42.7
AUR62010367 Chenopodium quinoa HOM05D004284 ORTHO05D006610 3.1e-18 95.9 159 35.8
VMungo1309G1744 Vigna mungo HOM05D004284 ORTHO05D006610 7.0e-18 94.7 151 39.1
HPP92_014972 Vanilla planifolia HOM05D004284 ORTHO05D006610 2.0e-17 93.2 108 45.4
CDE02G2842 Ceratophyllum demersum HOM05D004284 ORTHO05D006610 7.7e-17 91.3 110 46.4
Peaxi162Scf00016g00034 Petunia axillaris HOM05D004284 ORTHO05D006610 2.5e-15 86.3 72 55.6
Pp3c4_14410 Physcomitrium patens HOM05D004284 ORTHO05D006610 2.5e-15 86.3 101 45.5
SEGI_09605 Sequoiadendron giganteum HOM05D004284 ORTHO05D006610 2.7e-14 82.8 92 44.6
AagrBONN_evm.TU.Sc2ySwM_228.2393 Anthoceros agrestis HOM05D004284 ORTHO05D006610 3.6e-14 82.4 121 39.7
Mapoly0159s0020 Marchantia polymorpha HOM05D004284 ORTHO05D006610 6.1e-14 81.6 86 47.7
Aqoxy3G00712 Aquilegia oxysepala HOM05D004284 ORTHO05D006610 5.2e-13 78.6 112 38.4
SMO119G0196 Selaginella moellendorffii HOM05D004284 ORTHO05D006610 3.3e-12 75.9 144 36.1
SMO119G0149 Selaginella moellendorffii HOM05D004284 ORTHO05D006610 5.7e-12 75.1 88 44.3
Cc02_g16820 Coffea canephora HOM05D004284 ORTHO05D006610 7.5e-12 74.7 155 36.1
Medtr3g117580 Medicago truncatula HOM05D004284 ORTHO05D006610 2.8e-11 72.8 109 40.4
CSS0028050 Camellia sinensis var. sinensis HOM05D004284 ORTHO05D006610 1.2e-09 67.4 92 43.5
unitig_22.g6224 Utricularia gibba HOM05D004284 ORTHO05D006610 9.4e-07 57.8 41 70.7
Lalb_Chr11g0061291 Lupinus albus HOM05D004284 ORTHO05D006610 6.1e-06 55.1 141 29.8


User provided reference genes

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