Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0268431 Rosa chinensis HOM05D004284 ORTHO05D006610 4.4e-52 207.6 100 100.0
RcHm_v2.0_Chr6g0271641 Rosa chinensis HOM05D004284 ORTHO05D006610 2.5e-47 191.8 99 93.9
RcHm_v2.0_Chr6g0268371 Rosa chinensis HOM05D004284 ORTHO05D006610 1.6e-46 189.1 99 92.9
FvH4_2g10690 Fragaria vesca HOM05D004284 ORTHO05D006610 8.6e-40 166.8 99 82.8
FAN20G0619 Fragaria x ananassa HOM05D004284 ORTHO05D006610 8.6e-40 166.8 99 82.8
FAN15G2871 Fragaria x ananassa HOM05D004284 ORTHO05D006610 1.5e-39 166.0 95 85.3
FAN24G2266 Fragaria x ananassa HOM05D004284 ORTHO05D006610 2.9e-35 151.8 128 64.1
MD10G1062000 Malus domestica HOM05D004284 ORTHO05D006610 2.1e-33 145.6 100 73.0
Prupe.8G082800 Prunus persica HOM05D004284 ORTHO05D006610 7.8e-33 143.7 100 72.0
Haze_02227 Corylus avellana HOM05D004284 ORTHO05D006610 2.7e-25 118.6 96 60.4
Cfa005121 Carpinus fangiana HOM05D004284 ORTHO05D006610 1.7e-24 115.9 96 58.3
Ciclev10027934m.g Citrus clementina HOM05D004284 ORTHO05D006610 1.7e-24 115.9 96 60.4
QL11p046610 Quercus lobata HOM05D004284 ORTHO05D006610 2.3e-24 115.5 97 62.9
CiPaw.05G074300 Carya illinoinensis HOM05D004284 ORTHO05D006610 3.9e-24 114.8 96 60.4
Dinv23446 Davidia involucrata HOM05D004284 ORTHO05D006610 3.9e-24 114.8 101 55.4
CANSAT11G1394 Cannabis sativa HOM05D004284 ORTHO05D006610 5.1e-24 114.4 95 60.0
TWI75G0546 Tripterygium wilfordii HOM05D004284 ORTHO05D006610 4.3e-23 111.3 93 59.1
Atru.chr5.3162 Acer truncatum HOM05D004284 ORTHO05D006610 1.3e-22 109.8 96 59.4
Atru.chr5.3174 Acer truncatum HOM05D004284 ORTHO05D006610 1.3e-22 109.8 96 59.4
Manes.11G081200 Manihot esculenta HOM05D004284 ORTHO05D006610 1.6e-22 109.4 96 57.3
MELO3C013406.2 Cucumis melo HOM05D004284 ORTHO05D006610 6.2e-22 107.5 94 58.5
TAR376G0598 Trochodendron aralioides HOM05D004284 ORTHO05D006610 6.2e-22 107.5 99 52.5
CsaV3_7G000530 Cucumis sativus L. HOM05D004284 ORTHO05D006610 3.1e-21 105.1 93 57.0
TWI79G1346 Tripterygium wilfordii HOM05D004284 ORTHO05D006610 3.1e-21 105.1 94 56.4
arahy.Tifrunner.gnm1.ann1.835YPG Arachis hypogaea HOM05D004284 ORTHO05D006610 9.0e-21 103.6 95 52.6
DCAR_022791 Daucus carota HOM05D004284 ORTHO05D006610 9.0e-21 103.6 97 53.6
MD05G1054400 Malus domestica HOM05D004284 ORTHO05D006610 9.0e-21 103.6 67 73.1
TWI79G0275 Tripterygium wilfordii HOM05D004284 ORTHO05D006610 9.0e-21 103.6 94 56.4
arahy.Tifrunner.gnm1.ann1.6AD899 Arachis hypogaea HOM05D004284 ORTHO05D006610 2.0e-20 102.4 96 55.2
Sed0001411 Sechium edule HOM05D004284 ORTHO05D006610 3.4e-20 101.7 93 53.8
Glyma.04G007400 Glycine max HOM05D004284 ORTHO05D006610 5.8e-20 100.9 92 53.3
Lj5A188T39 Lonicera japonica HOM05D004284 ORTHO05D006610 5.8e-20 100.9 95 54.7
Thecc.02G073500 Theobroma cacao HOM05D004284 ORTHO05D006610 5.8e-20 100.9 94 55.3
ClCG02G004440 Citrullus lanatus HOM05D004284 ORTHO05D006610 9.9e-20 100.1 94 55.3
ECA233G5694 Erigeron canadensis HOM05D004284 ORTHO05D006610 1.3e-19 99.8 93 55.9
COL.COLO4_10617 Corchorus olitorius HOM05D004284 ORTHO05D006610 1.7e-19 99.4 78 62.8
Nitab4.5_0010885g0030 Nicotiana tabacum HOM05D004284 ORTHO05D006610 1.7e-19 99.4 83 56.6
Lj1g0012810 Lotus japonicus HOM05D004284 ORTHO05D006610 2.2e-19 99.0 93 55.9
MSTRG.20021 Avicennia marina HOM05D004284 ORTHO05D006610 2.9e-19 98.6 101 53.5
Duzib052G1007 Durio zibethinus HOM05D004284 ORTHO05D006610 2.9e-19 98.6 93 52.7
vmacro02047 Vaccinium macrocarpon HOM05D004284 ORTHO05D006610 2.9e-19 98.6 94 55.3
GSVIVG01024158001 Vitis vinifera HOM05D004284 ORTHO05D006610 3.8e-19 98.2 88 56.8
Lsat_1_v5_gn_8_126921 Lactuca sativa HOM05D004284 ORTHO05D006610 6.4e-19 97.4 95 52.6
Rhsim11G0184600 Rhododendron simsii HOM05D004284 ORTHO05D006610 8.4e-19 97.1 99 55.6
CSS0013523 Camellia sinensis var. sinensis HOM05D004284 ORTHO05D006610 1.1e-18 96.7 95 51.6
CSS0041983 Camellia sinensis var. sinensis HOM05D004284 ORTHO05D006610 1.1e-18 96.7 93 48.4
Sabra09G0096500 Salix brachista HOM05D004284 ORTHO05D006610 1.1e-18 96.7 91 56.0
Solyc01g110490.4 Solanum lycopersicum HOM05D004284 ORTHO05D006610 1.4e-18 96.3 88 52.3
Actinidia00120 Actinidia chinensis HOM05D004284 ORTHO05D006610 1.9e-18 95.9 69 63.8
Actinidia20651 Actinidia chinensis HOM05D004284 ORTHO05D006610 1.9e-18 95.9 69 63.8
Hund00174 Selenicereus undatus HOM05D004284 ORTHO05D006610 1.9e-18 95.9 96 46.9
Hund00182 Selenicereus undatus HOM05D004284 ORTHO05D006610 1.9e-18 95.9 96 46.9
Oeu055646.2 Olea europaea HOM05D004284 ORTHO05D006610 3.2e-18 95.1 95 51.6
Nn6g32279 Nelumbo nucifera HOM05D004284 ORTHO05D006610 4.2e-18 94.7 69 60.9
Nitab4.5_0002096g0020 Nicotiana tabacum HOM05D004284 ORTHO05D006610 4.2e-18 94.7 83 54.2
Sopen01g052620 Solanum pennellii HOM05D004284 ORTHO05D006610 4.2e-18 94.7 88 51.1
Eucgr.G01740 Eucalyptus grandis HOM05D004284 ORTHO05D006610 7.1e-18 94.0 96 50.0
Gorai.004G070900 Gossypium raimondii HOM05D004284 ORTHO05D006610 7.1e-18 94.0 89 52.8
QL02p020532 Quercus lobata HOM05D004284 ORTHO05D006610 9.3e-18 93.6 65 69.2
QL02p050982 Quercus lobata HOM05D004284 ORTHO05D006610 9.3e-18 93.6 65 69.2
Gohir.A13G086645 Gossypium hirsutum HOM05D004284 ORTHO05D006610 1.2e-17 93.2 64 65.6
PGR042G3704 Punica granatum HOM05D004284 ORTHO05D006610 1.2e-17 93.2 94 51.1
Gohir.D13G090800 Gossypium hirsutum HOM05D004284 ORTHO05D006610 1.6e-17 92.8 93 53.8
Gorai.001G243900 Gossypium raimondii HOM05D004284 ORTHO05D006610 3.5e-17 91.7 93 52.7
Potri.009G125500 Populus trichocarpa HOM05D004284 ORTHO05D006610 3.5e-17 91.7 91 53.8
PGSC0003DMG400001658 Solanum tuberosum HOM05D004284 ORTHO05D006610 4.6e-17 91.3 83 54.2
Duzib132G0815 Durio zibethinus HOM05D004284 ORTHO05D006610 6.0e-17 90.9 92 53.3
HanXRQChr17g0557281 Helianthus annuus HOM05D004284 ORTHO05D006610 1.0e-16 90.1 96 56.2
Cpa.g.sc150.6 Carica papaya HOM05D004284 ORTHO05D006610 1.3e-16 89.7 94 50.0
Migut.B00123 Erythranthe guttata HOM05D004284 ORTHO05D006610 1.3e-16 89.7 102 45.1
CAN.G1329.2 Capsicum annuum HOM05D004284 ORTHO05D006610 3.0e-16 88.6 83 50.6
MBI05_g26520_MAGBIO Magnolia biondii HOM05D004284 ORTHO05D006610 3.0e-16 88.6 87 50.6
Sc18g0005440 Simmondsia chinensis HOM05D004284 ORTHO05D006610 5.1e-16 87.8 97 51.5
ATR0147G023 Amborella trichopoda HOM05D004284 ORTHO05D006610 1.1e-15 86.7 84 53.6
Peaxi162Scf00362g11100 Petunia axillaris HOM05D004284 ORTHO05D006610 1.1e-15 86.7 93 48.4
AUR62016852 Chenopodium quinoa HOM05D004284 ORTHO05D006610 1.9e-15 85.9 96 42.7
SGA_v2.0_scaffold58G20431 Striga asiatica HOM05D004284 ORTHO05D006610 1.9e-15 85.9 95 51.6
Phvul.009G002300 Phaseolus vulgaris HOM05D004284 ORTHO05D006610 2.5e-15 85.5 81 53.1
Sp7g36950 Schrenkiella parvula HOM05D004284 ORTHO05D006610 3.3e-15 85.1 79 55.7
Ah.01g018640 Amaranthus hybridus HOM05D004284 ORTHO05D006610 5.6e-15 84.3 98 42.9
BolC1t00022H Brassica oleracea HOM05D004284 ORTHO05D006610 1.3e-14 83.2 71 54.9
AL7G10770 Arabidopsis lyrata HOM05D004284 ORTHO05D006610 1.6e-14 82.8 83 51.8
C01p00170 Brassica napus HOM05D004284 ORTHO05D006610 1.6e-14 82.8 94 45.7
Aa31LG6G16360 Aethionema arabicum HOM05D004284 ORTHO05D006610 2.1e-14 82.4 67 61.2
AT4G38890 Arabidopsis thaliana HOM05D004284 ORTHO05D006610 3.7e-14 81.6 83 50.6
TPR.G32210 Trifolium pratense HOM05D004284 ORTHO05D006610 3.7e-14 81.6 91 49.5
Ca_15330_v3 Cicer arietinum L. HOM05D004284 ORTHO05D006610 6.2e-14 80.9 63 63.5
EL10Ac9g21612 Beta vulgaris HOM05D004284 ORTHO05D006610 8.1e-14 80.5 100 40.0
THA.LOC104824786 Tarenaya hassleriana HOM05D004284 ORTHO05D006610 8.1e-14 80.5 90 47.8
CARHR247870 Cardamine hirsuta HOM05D004284 ORTHO05D006610 1.1e-13 80.1 91 44.0
Thhalv10024574m.g Eutrema salsugineum HOM05D004284 ORTHO05D006610 1.4e-13 79.7 83 50.6
SHI05642 Sapria himalayana HOM05D004284 ORTHO05D006610 1.4e-13 79.7 62 54.8
A01p00130 Brassica napus HOM05D004284 ORTHO05D006610 4.0e-13 78.2 77 50.6
CDE02G2842 Ceratophyllum demersum HOM05D004284 ORTHO05D006610 6.9e-13 77.4 90 47.8
BraA01t00017Z Brassica rapa HOM05D004284 ORTHO05D006610 1.2e-12 76.6 77 49.4
AUR62010367 Chenopodium quinoa HOM05D004284 ORTHO05D006610 1.5e-12 76.3 63 54.0
HPP92_014972 Vanilla planifolia HOM05D004284 ORTHO05D006610 2.0e-12 75.9 96 42.7
Carub.0007s0074 Capsella rubella HOM05D004284 ORTHO05D006610 2.6e-12 75.5 87 47.1
PSO675G4636 Papaver somniferum HOM05D004284 ORTHO05D006610 2.6e-12 75.5 85 48.2
Os04g0117600 Oryza sativa ssp. japonica HOM05D004284 ORTHO05D006610 4.5e-12 74.7 91 47.3
PSO541G2222 Papaver somniferum HOM05D004284 ORTHO05D006610 5.8e-12 74.3 85 48.2
Zm00001eb419910 Zea mays HOM05D004284 ORTHO05D006610 2.9e-11 72.0 76 48.7
VMungo1309G1744 Vigna mungo HOM05D004284 ORTHO05D006610 4.9e-11 71.2 89 46.1
Pp3c4_14410 Physcomitrium patens HOM05D004284 ORTHO05D006610 1.2e-09 66.6 83 45.8
SEGI_09605 Sequoiadendron giganteum HOM05D004284 ORTHO05D006610 2.1e-09 65.9 76 44.7
Mapoly0159s0020 Marchantia polymorpha HOM05D004284 ORTHO05D006610 2.7e-09 65.5 70 50.0
AagrBONN_evm.TU.Sc2ySwM_228.2393 Anthoceros agrestis HOM05D004284 ORTHO05D006610 6.0e-09 64.3 103 38.8
Peaxi162Scf00016g00034 Petunia axillaris HOM05D004284 ORTHO05D006610 6.0e-09 64.3 55 58.2
CSS0028050 Camellia sinensis var. sinensis HOM05D004284 ORTHO05D006610 2.3e-08 62.4 62 53.2
SMO119G0196 Selaginella moellendorffii HOM05D004284 ORTHO05D006610 2.5e-07 58.9 102 38.2
Medtr3g117580 Medicago truncatula HOM05D004284 ORTHO05D006610 4.3e-07 58.2 82 45.1
SMO119G0149 Selaginella moellendorffii HOM05D004284 ORTHO05D006610 7.4e-07 57.4 71 43.7
unitig_22.g6224 Utricularia gibba HOM05D004284 ORTHO05D006610 9.6e-07 57.0 41 68.3
Cc02_g16820 Coffea canephora HOM05D004284 ORTHO05D006610 1.3e-06 56.6 53 58.5
Aqoxy3G00712 Aquilegia oxysepala HOM05D004284 ORTHO05D006610 1.6e-06 56.2 52 50.0


User provided reference genes

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