Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0268071 Rosa chinensis HOM05D003531 ORTHO05D004354 1.6e-98 362.8 192 100.0
RcHm_v2.0_Chr1g0316671 Rosa chinensis HOM05D003531 ORTHO05D004354 1.7e-97 359.4 192 99.0
FAN03G2678 Fragaria x ananassa HOM05D003531 ORTHO05D004354 8.4e-92 340.5 190 94.2
FvH4_7g01200 Fragaria vesca HOM05D003531 ORTHO05D004354 3.3e-88 328.6 191 93.2
FAN06G4268 Fragaria x ananassa HOM05D003531 ORTHO05D004354 3.3e-88 328.6 191 93.2
FAN10G4005 Fragaria x ananassa HOM05D003531 ORTHO05D004354 3.3e-88 328.6 191 92.7
FAN01G0774 Fragaria x ananassa HOM05D003531 ORTHO05D004354 2.1e-87 325.9 184 94.0
Prupe.2G016600 Prunus persica HOM05D003531 ORTHO05D004354 1.7e-76 289.7 191 80.6
MD07G1013100 Malus domestica HOM05D003531 ORTHO05D004354 1.3e-71 273.5 192 78.1
MD02G1308700 Malus domestica HOM05D003531 ORTHO05D004354 3.0e-65 252.3 193 76.7
CANSAT80G0550 Cannabis sativa HOM05D003531 ORTHO05D004354 8.2e-63 244.2 192 70.3
QL04p008498 Quercus lobata HOM05D003531 ORTHO05D004354 1.2e-58 230.3 179 70.4
Thecc.01G409300 Theobroma cacao HOM05D003531 ORTHO05D004354 3.6e-58 228.8 191 66.5
COL.COLO4_04865 Corchorus olitorius HOM05D003531 ORTHO05D004354 3.0e-57 225.7 191 64.9
Cpa.g.sc125.24 Carica papaya HOM05D003531 ORTHO05D004354 1.5e-56 223.4 189 65.1
ClCG09G004050 Citrullus lanatus HOM05D003531 ORTHO05D004354 2.2e-55 219.5 196 64.3
Potri.001G264800 Populus trichocarpa HOM05D003531 ORTHO05D004354 1.1e-54 217.2 189 63.5
Glyma.09G228600 Glycine max HOM05D003531 ORTHO05D004354 2.0e-53 213.0 189 62.4
Sed0001045 Sechium edule HOM05D003531 ORTHO05D004354 2.0e-53 213.0 196 61.7
Gohir.D08G164500 Gossypium hirsutum HOM05D003531 ORTHO05D004354 2.6e-53 212.6 192 62.0
Gorai.004G171500 Gossypium raimondii HOM05D003531 ORTHO05D004354 2.6e-53 212.6 192 62.0
Duzib138G1641 Durio zibethinus HOM05D003531 ORTHO05D004354 5.9e-53 211.5 189 61.4
Sed0002980 Sechium edule HOM05D003531 ORTHO05D004354 5.9e-53 211.5 183 64.5
Gohir.A08G143500 Gossypium hirsutum HOM05D003531 ORTHO05D004354 1.7e-52 209.9 192 60.9
Sabra16G0162700 Salix brachista HOM05D003531 ORTHO05D004354 1.7e-52 209.9 182 63.2
PGR031G1295 Punica granatum HOM05D003531 ORTHO05D004354 3.8e-52 208.8 189 63.0
Phvul.011G010000 Phaseolus vulgaris HOM05D003531 ORTHO05D004354 5.0e-52 208.4 181 64.1
Ciclev10030635m.g Citrus clementina HOM05D003531 ORTHO05D004354 8.5e-52 207.6 173 67.6
Glyma.12G007900 Glycine max HOM05D003531 ORTHO05D004354 4.2e-51 205.3 181 62.4
arahy.Tifrunner.gnm1.ann1.V60VE2 Arachis hypogaea HOM05D003531 ORTHO05D004354 9.4e-51 204.1 181 63.0
arahy.Tifrunner.gnm1.ann1.L35I2V Arachis hypogaea HOM05D003531 ORTHO05D004354 1.6e-50 203.4 181 63.0
Dinv09345 Davidia involucrata HOM05D003531 ORTHO05D004354 1.6e-50 203.4 190 60.5
Actinidia20660 Actinidia chinensis HOM05D003531 ORTHO05D004354 2.1e-50 203.0 189 62.4
VMungo1127G0476 Vigna mungo HOM05D003531 ORTHO05D004354 3.6e-50 202.2 186 61.8
Dinv43430 Davidia involucrata HOM05D003531 ORTHO05D004354 6.1e-50 201.4 183 61.2
TWI73G0346 Tripterygium wilfordii HOM05D003531 ORTHO05D004354 6.1e-50 201.4 188 61.2
Eucgr.G03370 Eucalyptus grandis HOM05D003531 ORTHO05D004354 7.9e-50 201.1 192 60.9
Sabra09G0043900 Salix brachista HOM05D003531 ORTHO05D004354 1.4e-49 200.3 186 60.2
Lj3g0012564 Lotus japonicus HOM05D003531 ORTHO05D004354 1.8e-49 199.9 181 62.4
MELO3C023561.2 Cucumis melo HOM05D003531 ORTHO05D004354 3.0e-49 199.1 196 60.7
Lj3g0024838 Lotus japonicus HOM05D003531 ORTHO05D004354 3.0e-49 199.1 181 62.4
CsaV3_7G030950 Cucumis sativus L. HOM05D003531 ORTHO05D004354 5.1e-49 198.4 196 60.2
Gohir.A08G028300 Gossypium hirsutum HOM05D003531 ORTHO05D004354 6.7e-49 198.0 188 58.5
Potri.009G059500 Populus trichocarpa HOM05D003531 ORTHO05D004354 6.7e-49 198.0 188 61.2
Potri.009G059700 Populus trichocarpa HOM05D003531 ORTHO05D004354 8.8e-49 197.6 189 60.3
Gohir.D08G039066 Gossypium hirsutum HOM05D003531 ORTHO05D004354 1.5e-48 196.8 188 58.5
vmacro21192 Vaccinium macrocarpon HOM05D003531 ORTHO05D004354 2.6e-48 196.1 181 62.4
AUR62023077 Chenopodium quinoa HOM05D003531 ORTHO05D004354 3.3e-48 195.7 191 57.6
Ca_19577_v3 Cicer arietinum L. HOM05D003531 ORTHO05D004354 3.3e-48 195.7 181 61.9
Manes.07G007000 Manihot esculenta HOM05D003531 ORTHO05D004354 3.3e-48 195.7 192 59.9
Rhsim01G0128500 Rhododendron simsii HOM05D003531 ORTHO05D004354 5.7e-48 194.9 184 62.0
AUR62009395 Chenopodium quinoa HOM05D003531 ORTHO05D004354 9.7e-48 194.1 191 57.6
Gorai.004G037700 Gossypium raimondii HOM05D003531 ORTHO05D004354 9.7e-48 194.1 188 58.0
MBI04_g44436_MAGBIO Magnolia biondii HOM05D003531 ORTHO05D004354 1.3e-47 193.7 195 60.5
Manes.10G140700 Manihot esculenta HOM05D003531 ORTHO05D004354 1.7e-47 193.4 194 59.3
TWI09G1532 Tripterygium wilfordii HOM05D003531 ORTHO05D004354 1.7e-47 193.4 189 59.3
Psat0s1245g0040 Pisum sativum HOM05D003531 ORTHO05D004354 2.2e-47 193.0 181 60.2
Hund19803 Selenicereus undatus HOM05D003531 ORTHO05D004354 8.2e-47 191.0 181 59.7
Nn7g36242 Nelumbo nucifera HOM05D003531 ORTHO05D004354 2.4e-46 189.5 193 57.0
CAN.G219.38 Capsicum annuum HOM05D003531 ORTHO05D004354 3.1e-46 189.1 185 61.1
Sopen01g034370 Solanum pennellii HOM05D003531 ORTHO05D004354 3.1e-46 189.1 185 58.9
Solyc01g087430.3 Solanum lycopersicum HOM05D003531 ORTHO05D004354 1.2e-45 187.2 185 58.4
Nn2g15298 Nelumbo nucifera HOM05D003531 ORTHO05D004354 2.0e-45 186.4 192 58.3
Haze_03181 Corylus avellana HOM05D003531 ORTHO05D004354 3.4e-45 185.7 156 66.7
TAR633G0763 Trochodendron aralioides HOM05D003531 ORTHO05D004354 4.5e-45 185.3 153 68.0
Peaxi162Scf00953g00513 Petunia axillaris HOM05D003531 ORTHO05D004354 5.9e-45 184.9 185 59.5
Cc02_g28130 Coffea canephora HOM05D003531 ORTHO05D004354 1.0e-44 184.1 182 58.2
AUR62043479 Chenopodium quinoa HOM05D003531 ORTHO05D004354 1.7e-44 183.3 163 62.6
Atru.chr11.2606 Acer truncatum HOM05D003531 ORTHO05D004354 2.9e-44 182.6 186 58.6
Nitab4.5_0002918g0090 Nicotiana tabacum HOM05D003531 ORTHO05D004833 6.5e-44 181.4 187 56.7
Nitab4.5_0008353g0020 Nicotiana tabacum HOM05D003957 ORTHO05D004833 6.5e-44 181.4 179 58.7
PGSC0003DMG400006794 Solanum tuberosum HOM05D003531 ORTHO05D004354 6.5e-44 181.4 185 57.3
TPR.G3645 Trifolium pratense HOM05D003531 ORTHO05D004354 6.5e-44 181.4 179 58.7
MBI02_g05670_MAGBIO Magnolia biondii HOM05D003531 ORTHO05D004354 8.5e-44 181.0 194 57.2
arahy.Tifrunner.gnm1.ann1.2BQ2P0 Arachis hypogaea HOM05D003531 ORTHO05D004354 1.4e-43 180.3 185 57.8
Sopen01g034360 Solanum pennellii HOM05D003531 ORTHO05D004354 1.4e-43 180.3 185 56.8
arahy.Tifrunner.gnm1.ann1.T4LWN5 Arachis hypogaea HOM05D003531 ORTHO05D004354 1.9e-43 179.9 185 57.8
CiPaw.14G001000 Carya illinoinensis HOM05D003531 ORTHO05D004354 1.9e-43 179.9 164 65.9
Solyc01g087420.4 Solanum lycopersicum HOM05D003531 ORTHO05D004354 2.5e-43 179.5 185 56.8
Lalb_Chr19g0140301 Lupinus albus HOM05D003531 ORTHO05D004354 4.2e-43 178.7 158 65.2
EL10Ac2g04341 Beta vulgaris HOM05D003531 ORTHO05D004354 7.2e-43 177.9 166 60.2
Lalb_Chr01g0000391 Lupinus albus HOM05D003531 ORTHO05D004354 7.2e-43 177.9 185 56.8
Sc11g0009100 Simmondsia chinensis HOM05D003531 ORTHO05D004354 1.2e-42 177.2 180 55.0
Medtr4g037745 Medicago truncatula HOM05D003531 ORTHO05D004354 3.0e-41 172.6 192 55.7
CSS0044266 Camellia sinensis var. sinensis HOM05D003531 ORTHO05D004354 8.8e-41 171.0 188 56.9
Lalb_Chr25g0282961 Lupinus albus HOM05D003531 ORTHO05D004354 1.1e-40 170.6 179 57.5
Hund21485 Selenicereus undatus HOM05D003531 ORTHO05D004354 1.1e-40 170.6 177 57.1
THA.LOC104827429 Tarenaya hassleriana HOM05D003531 ORTHO05D004354 2.0e-40 169.9 162 59.3
Sc23g0005960 Simmondsia chinensis HOM05D003531 ORTHO05D004354 4.4e-40 168.7 180 52.2
Lj9C634G4 Lonicera japonica HOM05D003531 ORTHO05D004354 1.7e-39 166.8 173 57.8
Hma1.2p1_0495F.1_g165700 Hydrangea macrophylla HOM05D003531 ORTHO05D004354 3.7e-39 165.6 178 57.9
DCAR_029680 Daucus carota HOM05D003531 ORTHO05D004354 8.2e-39 164.5 183 53.6
Carub.0005s1842 Capsella rubella HOM05D003531 ORTHO05D004354 9.1e-38 161.0 188 52.1
CDE05G0662 Ceratophyllum demersum HOM05D003531 ORTHO05D004354 2.0e-37 159.8 172 55.2
CDE05G3403 Ceratophyllum demersum HOM05D003531 ORTHO05D004354 2.0e-37 159.8 189 51.3
Sopen01g034460 Solanum pennellii HOM05D003531 ORTHO05D004354 2.0e-37 159.8 183 53.0
Aa31LG10G7170 Aethionema arabicum HOM05D003531 ORTHO05D004354 3.5e-37 159.1 192 51.6
Solyc01g087400.4 Solanum lycopersicum HOM05D003531 ORTHO05D004354 7.7e-37 157.9 183 54.1
Thhalv10010234m.g Eutrema salsugineum HOM05D003531 ORTHO05D004354 5.0e-36 155.2 187 52.9
CARHR161810 Cardamine hirsuta HOM05D003531 ORTHO05D004354 8.5e-36 154.5 188 51.1
HanXRQChr17g0563011 Helianthus annuus HOM05D003531 ORTHO05D004354 2.5e-35 152.9 143 59.4
BraA01t04348Z Brassica rapa HOM05D003531 ORTHO05D004354 4.2e-35 152.1 170 56.5
BolC1t05508H Brassica oleracea HOM05D003531 ORTHO05D004354 5.5e-35 151.8 169 55.6
PSO339G4096 Papaver somniferum HOM05D003531 ORTHO05D004354 5.5e-35 151.8 187 50.3
ATR0332G091 Amborella trichopoda HOM05D003531 ORTHO05D004354 7.2e-35 151.4 157 58.0
CARHR082750 Cardamine hirsuta HOM05D003531 ORTHO05D004354 7.2e-35 151.4 170 54.7
Thhalv10020119m.g Eutrema salsugineum HOM05D003531 ORTHO05D004354 7.2e-35 151.4 159 56.6
AL5G32650 Arabidopsis lyrata HOM05D003531 ORTHO05D004354 9.4e-35 151.0 189 49.7
Sp3g06930 Schrenkiella parvula HOM05D003531 ORTHO05D004354 1.2e-34 150.6 156 58.3
AT3G08020 Arabidopsis thaliana HOM05D003531 ORTHO05D004354 1.6e-34 150.2 171 55.6
BolC8t50353H Brassica oleracea HOM05D003531 ORTHO05D004354 1.6e-34 150.2 196 50.0
BcaC09g47972 Brassica carinata HOM05D003531 ORTHO05D004354 2.1e-34 149.8 188 51.6
Sp5g10200 Schrenkiella parvula HOM05D003531 ORTHO05D004354 2.1e-34 149.8 175 53.1
AL3G19400 Arabidopsis lyrata HOM05D003531 ORTHO05D004354 2.7e-34 149.4 200 48.5
Aa31LG5G18570 Aethionema arabicum HOM05D002263 ORTHO05D003537 3.6e-34 149.1 201 49.8
PSO384G4091 Papaver somniferum HOM05D003531 ORTHO05D004354 3.6e-34 149.1 186 50.0
BcaNung06091 Brassica carinata HOM05D003531 ORTHO05D004354 8.0e-34 147.9 196 49.5
A09p45150 Brassica napus HOM05D003531 ORTHO05D004354 8.0e-34 147.9 196 49.0
C08p27360 Brassica napus HOM05D003531 ORTHO05D004354 8.0e-34 147.9 196 49.5
BraA09t39978Z Brassica rapa HOM05D003531 ORTHO05D004354 8.0e-34 147.9 196 49.0
Carub.0003s0760 Capsella rubella HOM05D003531 ORTHO05D004354 1.0e-33 147.5 200 49.5
BcaB01g00446 Brassica carinata HOM05D003531 ORTHO05D004354 1.4e-33 147.1 181 51.9
Aqoxy2G00174 Aquilegia oxysepala HOM05D003531 ORTHO05D004354 1.5e-32 143.7 199 46.2
ECA248G0343 Erigeron canadensis HOM05D003531 ORTHO05D004354 2.0e-32 143.3 157 54.1
HPP92_009589 Vanilla planifolia HOM05D003531 ORTHO05D004354 1.7e-31 140.2 155 51.0
Oeu063180.2 Olea europaea HOM05D003531 ORTHO05D004354 2.8e-31 139.4 183 44.8
CiPaw.13G006400 Carya illinoinensis HOM05D003531 ORTHO05D004354 8.2e-31 137.9 133 62.4
Oeu048992.1 Olea europaea HOM05D003531 ORTHO05D004354 8.2e-31 137.9 185 46.5
TAR369G0698 Trochodendron aralioides HOM05D003531 ORTHO05D004354 1.6e-29 133.7 98 67.3
Migut.N01607 Erythranthe guttata HOM05D003531 ORTHO05D004354 7.7e-29 131.3 182 46.7
A03p48680 Brassica napus HOM05D003531 ORTHO05D004354 1.3e-28 130.6 151 53.6
BcaC06g33381 Brassica carinata HOM05D003531 ORTHO05D004354 1.7e-28 130.2 150 53.3
C07p46790 Brassica napus HOM05D003531 ORTHO05D004354 1.7e-28 130.2 150 53.3
BolC7t45196H Brassica oleracea HOM05D003531 ORTHO05D004354 1.7e-28 130.2 150 53.3
HanXRQChr09g0251321 Helianthus annuus HOM05D003531 ORTHO05D004354 3.8e-28 129.0 141 54.6
MSTRG.5029 Avicennia marina HOM05D003531 ORTHO05D004354 6.5e-28 128.3 199 40.7
Sopen01g034350 Solanum pennellii HOM05D003531 ORTHO05D004354 2.5e-27 126.3 186 42.5
Lsat_1_v5_gn_4_31500 Lactuca sativa HOM05D003531 ORTHO05D004354 3.2e-27 125.9 177 45.8
ECA234G4456 Erigeron canadensis HOM05D003531 ORTHO05D004354 1.2e-26 124.0 142 48.6
Solyc01g087320.3 Solanum lycopersicum HOM05D003531 ORTHO05D004354 1.2e-26 124.0 183 42.6
GSVIVG01032130001 Vitis vinifera HOM05D003531 ORTHO05D004354 1.4e-25 120.6 76 76.3
Lsat_1_v5_gn_1_106281 Lactuca sativa HOM05D003531 ORTHO05D004354 5.2e-25 118.6 184 42.9
unitig_8.g3623 Utricularia gibba HOM05D003531 ORTHO05D004354 3.4e-24 115.9 201 39.3
Os12g0527800 Oryza sativa ssp. japonica HOM05D003531 ORTHO05D004354 9.8e-24 114.4 203 41.9
BraA03t13971Z Brassica rapa HOM05D003531 ORTHO05D004354 4.8e-23 112.1 140 50.7
Zm00001eb410840 Zea mays HOM05D003531 ORTHO05D004354 6.3e-23 111.7 188 40.4
Zm00001eb137800 Zea mays HOM05D003531 ORTHO05D004354 8.3e-23 111.3 188 43.6
SGA_v2.0_scaffold24G10668 Striga asiatica HOM05D003531 ORTHO05D004354 5.9e-21 105.1 197 41.1
unitig_699.g19826 Utricularia gibba HOM05D003531 ORTHO05D004354 7.7e-21 104.8 180 40.0
AT3G52100 Arabidopsis thaliana HOM05D003531 ORTHO05D004354 1.1e-19 100.9 141 43.3
Sopen01g034440 Solanum pennellii HOM05D003531 ORTHO05D004354 9.5e-19 97.8 167 40.7
Solyc01g087360.3 Solanum lycopersicum HOM05D003531 ORTHO05D004354 1.2e-18 97.4 167 40.7
BcaC06g33024 Brassica carinata HOM05D003531 ORTHO05D004354 1.2e-16 90.9 182 38.5
Mapoly0014s0141 Marchantia polymorpha HOM05D003531 ORTHO05D004354 2.8e-10 69.7 155 34.2
SMO203G0227 Selaginella moellendorffii HOM05D003531 ORTHO05D004354 3.6e-10 69.3 171 32.7
MBI02_g23151_MAGBIO Magnolia biondii HOM05D003531 ORTHO05D004354 2.6e-08 63.2 75 50.7
Pp3c8_14490 Physcomitrium patens HOM05D003531 ORTHO05D004354 3.2e-06 56.2 125 35.2


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