Gene: AT3G52100

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G52100
  • Transcript Identifier AT3G52100.2
  • Gene Type Coding gene
  • Location Chr3 : 19319343-19322646 : positive

Gene Family Information

  • ID HOM05D003531
  • #Genes/#Species 193/92
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G52100.2
  • uniprot F4J5R1

Descriptions

  • Description RING/FYVE/PHD-type zinc finger family protein
  • Computational description RING/FYVE/PHD-type zinc finger family protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: PHD finger family protein (TAIR:AT3G08020.1); Has 2078 Blast hits to 1918 proteins in 172 species: Archae - 0; Bacteria - 21; Metazoa - 1521; Fungi - 60; Plants - 220; Viruses - 0; Other Eukaryotes - 256 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0045892
IBA
Gene Ontologynegative regulation of transcription, DNA-templated1
GO:0045944
IBA
Gene Ontologypositive regulation of transcription by RNA polymerase II1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IPI
Gene Ontologyprotein binding2
GO:0003712
IBA
Gene Ontologytranscription coregulator activity1
GO:0042393
IBA
Gene Ontologyhistone binding1
GO:0046872
IEA
GOA Databasemetal ion binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISM
Gene Ontologynucleus
GO:0009506
IDA
GOA Databaseplasmodesma
GO:0009506
HDA
Gene Ontologyplasmodesma3

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR011011 Zinc finger, FYVE/PHD-type
IPR001965 Zinc finger, PHD-type
IPR013083 Zinc finger, RING/FYVE/PHD-type
Mapman id Description
35.1 not assigned.annotated