Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0266701 Rosa chinensis HOM05D003955 ORTHO05D004684 1.0e-41 172.9 86 100.0
RcHm_v2.0_Chr6g0295791 Rosa chinensis HOM05D003955 ORTHO05D004684 5.1e-41 170.6 86 98.8
Oeu061232.2 Olea europaea HOM05D003955 ORTHO05D004684 6.5e-28 127.1 71 83.1
TAR622G0688 Trochodendron aralioides HOM05D003955 ORTHO05D004684 6.5e-28 127.1 72 83.3
TWI15G0606 Tripterygium wilfordii HOM05D003955 ORTHO05D004684 6.1e-26 120.6 72 75.0
MSTRG.9290 Avicennia marina HOM05D003955 ORTHO05D004684 1.0e-25 119.8 73 72.6
Medtr1g107560 Medicago truncatula HOM05D003955 ORTHO05D004684 1.4e-25 119.4 73 74.0
TWI81G0555 Tripterygium wilfordii HOM05D003955 ORTHO05D004684 1.4e-25 119.4 72 76.4
AUR62014196 Chenopodium quinoa HOM05D003955 ORTHO05D004684 2.0e-24 115.5 73 68.5
Hund24990 Selenicereus undatus HOM05D003955 ORTHO05D004684 5.7e-24 114.0 95 58.9
Gorai.002G180400 Gossypium raimondii HOM05D003955 ORTHO05D004684 1.1e-22 109.8 73 67.1
COL.COLO4_20464 Corchorus olitorius HOM05D003955 ORTHO05D004684 1.8e-22 109.0 72 69.4
Mapoly0025s0096 Marchantia polymorpha HOM05D003955 ORTHO05D004684 5.3e-22 107.5 72 69.4
RcHm_v2.0_Chr7g0178701 Rosa chinensis HOM05D003955 ORTHO05D004684 1.3e-20 102.8 73 71.2
ClCG06G014440 Citrullus lanatus HOM05D003955 ORTHO05D004684 3.8e-20 101.3 72 65.3
Atru.chr9.1764 Acer truncatum HOM05D003955 ORTHO05D004684 1.6e-18 95.9 82 62.2
FAN04G3226 Fragaria x ananassa HOM05D003955 ORTHO05D004684 1.6e-18 95.9 73 65.8
FAN08G2535 Fragaria x ananassa HOM05D003955 ORTHO05D004684 1.6e-18 95.9 73 65.8
FAN13G1787 Fragaria x ananassa HOM05D003955 ORTHO05D004684 1.6e-18 95.9 73 65.8
Aqoxy3G04013 Aquilegia oxysepala HOM05D003955 ORTHO05D004684 2.1e-18 95.5 72 63.9
FAN18G0775 Fragaria x ananassa HOM05D003955 ORTHO05D004684 2.1e-18 95.5 73 65.8
Cfa019689 Carpinus fangiana HOM05D003955 ORTHO05D004684 4.7e-18 94.4 72 63.9
Gohir.D11G003500 Gossypium hirsutum HOM05D003955 ORTHO05D004684 6.1e-18 94.0 72 65.3
CiPaw.15G139700 Carya illinoinensis HOM05D003955 ORTHO05D004684 8.0e-18 93.6 72 63.9
FvH4_5g17110 Fragaria vesca HOM05D003955 ORTHO05D004684 1.0e-17 93.2 73 64.4
Sed0014282 Sechium edule HOM05D003955 ORTHO05D004684 1.4e-17 92.8 72 59.7
Haze_18797 Corylus avellana HOM05D003955 ORTHO05D004684 1.8e-17 92.4 72 62.5
CsaV3_1G004220 Cucumis sativus L. HOM05D003955 ORTHO05D004684 1.8e-17 92.4 72 61.1
Gorai.007G004500 Gossypium raimondii HOM05D003955 ORTHO05D004684 3.0e-17 91.7 72 63.9
GSVIVG01008399001 Vitis vinifera HOM05D003955 ORTHO05D004684 3.0e-17 91.7 72 63.9
Gohir.A11G004000 Gossypium hirsutum HOM05D003955 ORTHO05D004684 4.0e-17 91.3 72 63.9
MD06G1229500 Malus domestica HOM05D003955 ORTHO05D004684 4.0e-17 91.3 72 61.1
CANSAT80G2537 Cannabis sativa HOM05D003955 ORTHO05D004684 5.2e-17 90.9 72 62.5
Sed0001638 Sechium edule HOM05D003955 ORTHO05D004684 6.8e-17 90.5 72 59.7
TAR374G0009 Trochodendron aralioides HOM05D003955 ORTHO05D004684 6.8e-17 90.5 72 62.5
Ah.03g138590 Amaranthus hybridus HOM05D003955 ORTHO05D004684 1.5e-16 89.4 72 58.3
MELO3C017347.2 Cucumis melo HOM05D003955 ORTHO05D004684 1.5e-16 89.4 72 59.7
PSO063G1948 Papaver somniferum HOM05D003955 ORTHO05D004684 1.5e-16 89.4 72 59.7
PSO782G1387 Papaver somniferum HOM05D003955 ORTHO05D004684 1.5e-16 89.4 72 59.7
RcHm_v2.0_Chr5g0062751 Rosa chinensis HOM05D003955 ORTHO05D004684 1.5e-16 89.4 50 88.0
Sp3g16180 Schrenkiella parvula HOM05D003955 ORTHO05D004684 1.5e-16 89.4 70 61.4
Zm00001eb396840 Zea mays HOM05D003955 ORTHO05D004684 2.0e-16 89.0 73 61.6
CARHR093380 Cardamine hirsuta HOM05D003955 ORTHO05D004684 2.6e-16 88.6 70 61.4
COL.COLO4_22318 Corchorus olitorius HOM05D003955 ORTHO05D004684 2.6e-16 88.6 72 59.7
Dinv26502 Davidia involucrata HOM05D003955 ORTHO05D004684 2.6e-16 88.6 72 59.7
arahy.Tifrunner.gnm1.ann1.I5E1T8 Arachis hypogaea HOM05D003955 ORTHO05D004684 3.4e-16 88.2 73 56.2
arahy.Tifrunner.gnm1.ann1.MW1RK6 Arachis hypogaea HOM05D003955 ORTHO05D004684 3.4e-16 88.2 73 56.2
DCAR_014770 Daucus carota HOM05D003955 ORTHO05D004684 3.4e-16 88.2 72 59.7
MD14G1234400 Malus domestica HOM05D003955 ORTHO05D004684 3.4e-16 88.2 72 58.3
Manes.06G008300 Manihot esculenta HOM05D003955 ORTHO05D004684 4.4e-16 87.8 72 58.3
SMO298G0047 Selaginella moellendorffii HOM05D003955 ORTHO05D004684 4.4e-16 87.8 71 56.3
Aa31LG8G4920 Aethionema arabicum HOM05D003955 ORTHO05D004684 5.7e-16 87.4 70 61.4
Thecc.03G050300 Theobroma cacao HOM05D003955 ORTHO05D004684 5.7e-16 87.4 72 59.7
Zm00001eb076360 Zea mays HOM05D003955 ORTHO05D004684 5.7e-16 87.4 73 60.3
Zm00001eb287030 Zea mays HOM05D003955 ORTHO05D004684 5.7e-16 87.4 73 60.3
Zm00001eb334960 Zea mays HOM05D003955 ORTHO05D004684 5.7e-16 87.4 73 60.3
Zm00001eb337090 Zea mays HOM05D003955 ORTHO05D004684 5.7e-16 87.4 73 60.3
QL10p027883 Quercus lobata HOM05D003955 ORTHO05D004684 7.5e-16 87.0 72 61.1
THA.LOC104820357 Tarenaya hassleriana HOM05D003955 ORTHO05D004684 7.5e-16 87.0 70 61.4
Migut.D01456 Erythranthe guttata HOM05D003955 ORTHO05D004684 9.8e-16 86.7 72 61.1
Glyma.20G126400 Glycine max HOM05D003955 ORTHO05D004684 1.3e-15 86.3 74 58.1
Lalb_Chr06g0165551 Lupinus albus HOM05D003955 ORTHO05D004684 1.3e-15 86.3 73 57.5
Prupe.5G230600 Prunus persica HOM05D003955 ORTHO05D004684 2.2e-15 85.5 72 59.7
Actinidia18907 Actinidia chinensis HOM05D003955 ORTHO05D004684 2.8e-15 85.1 59 66.1
CSS0005322 Camellia sinensis var. sinensis HOM05D003955 ORTHO05D004684 3.7e-15 84.7 73 56.2
Atru.chr11.420 Acer truncatum HOM05D003955 ORTHO05D004684 4.8e-15 84.3 72 56.9
Carub.0003s1778 Capsella rubella HOM05D003955 ORTHO05D004684 4.8e-15 84.3 70 58.6
HPP92_000152 Vanilla planifolia HOM05D003955 ORTHO05D004684 4.8e-15 84.3 73 56.2
HanXRQChr10g0314661 Helianthus annuus HOM05D003955 ORTHO05D004684 6.3e-15 84.0 72 56.9
Hund20686 Selenicereus undatus HOM05D003955 ORTHO05D004684 6.3e-15 84.0 72 55.6
SGA_v2.0_scaffold25G10972 Striga asiatica HOM05D003955 ORTHO05D004684 6.3e-15 84.0 72 58.3
AT3G18060 Arabidopsis thaliana HOM05D003955 ORTHO05D004684 8.3e-15 83.6 73 54.8
C05p48110 Brassica napus HOM05D003955 ORTHO05D004684 8.3e-15 83.6 70 58.6
CDE04G0774 Ceratophyllum demersum HOM05D003955 ORTHO05D004684 8.3e-15 83.6 72 56.9
DCAR_023230 Daucus carota HOM05D003955 ORTHO05D004684 8.3e-15 83.6 72 54.2
Ciclev10014635m.g Citrus clementina HOM05D003955 ORTHO05D004684 1.1e-14 83.2 70 58.6
Thhalv10020321m.g Eutrema salsugineum HOM05D003955 ORTHO05D004684 1.1e-14 83.2 70 58.6
Hma1.2p1_0669F.1_g200270 Hydrangea macrophylla HOM05D003955 ORTHO05D004684 1.1e-14 83.2 72 56.9
Psat6g220280 Pisum sativum HOM05D003955 ORTHO05D004684 1.4e-14 82.8 73 54.8
Thecc.02G279800 Theobroma cacao HOM05D003955 ORTHO05D004684 1.4e-14 82.8 72 55.6
vmacro16423 Vaccinium macrocarpon HOM05D003955 ORTHO05D004684 1.4e-14 82.8 72 55.6
A05p31710 Brassica napus HOM05D003955 ORTHO05D004684 1.8e-14 82.4 70 58.6
BraA05t22004Z Brassica rapa HOM05D003955 ORTHO05D004684 1.8e-14 82.4 70 58.6
Gohir.A01G153300 Gossypium hirsutum HOM05D003955 ORTHO05D004684 3.1e-14 81.6 73 53.4
TPR.G13862 Trifolium pratense HOM05D003955 ORTHO05D004684 3.1e-14 81.6 73 53.4
AL3G31220 Arabidopsis lyrata HOM05D003955 ORTHO05D004684 4.1e-14 81.3 70 57.1
C09p30050 Brassica napus HOM05D003955 ORTHO05D004684 4.1e-14 81.3 68 57.4
BolC9t55869H Brassica oleracea HOM05D003955 ORTHO05D004684 4.1e-14 81.3 68 57.4
Os01g0125800 Oryza sativa ssp. japonica HOM05D003955 ORTHO05D004684 5.4e-14 80.9 73 56.2
BolC5t33552H Brassica oleracea HOM05D003955 ORTHO05D004684 9.1e-14 80.1 70 57.1
Glyma.05G243900 Glycine max HOM05D003955 ORTHO05D004684 1.2e-13 79.7 72 56.9
Potri.015G041200 Populus trichocarpa HOM05D003955 ORTHO05D004684 1.2e-13 79.7 72 54.2
Sabra15G0055900 Salix brachista HOM05D003955 ORTHO05D004684 1.2e-13 79.7 72 54.2
Sabra15G0063600 Salix brachista HOM05D003955 ORTHO05D004684 1.2e-13 79.7 72 54.2
VMungo0720G1874 Vigna mungo HOM05D003955 ORTHO05D004684 1.2e-13 79.7 69 55.1
Cpa.g.sc3.440 Carica papaya HOM05D003955 ORTHO05D004684 1.6e-13 79.3 72 56.9
Nitab4.5_0001644g0090 Nicotiana tabacum HOM05D003955 ORTHO05D004684 1.6e-13 79.3 72 54.2
Dinv05158 Davidia involucrata HOM05D003955 ORTHO05D004684 2.0e-13 79.0 72 52.8
ECA234G1883 Erigeron canadensis HOM05D003955 ORTHO05D004684 2.0e-13 79.0 72 55.6
Gohir.D01G099700 Gossypium hirsutum HOM05D003955 ORTHO05D004684 2.7e-13 78.6 73 50.7
Zm00001eb125700 Zea mays HOM05D003955 ORTHO05D004684 2.7e-13 78.6 73 54.8
A09p23310 Brassica napus HOM05D003955 ORTHO05D004684 3.5e-13 78.2 68 54.4
BraA09t37932Z Brassica rapa HOM05D003955 ORTHO05D004684 3.5e-13 78.2 68 54.4
Rhsim12G0139700 Rhododendron simsii HOM05D003955 ORTHO05D004684 3.5e-13 78.2 72 51.4
Potri.012G049200 Populus trichocarpa HOM05D003955 ORTHO05D004684 4.5e-13 77.8 72 51.4
Eucgr.K02263 Eucalyptus grandis HOM05D003955 ORTHO05D004684 7.7e-13 77.0 72 51.4
VMungo0251G3447 Vigna mungo HOM05D003955 ORTHO05D004684 7.7e-13 77.0 72 55.6
Aa31LG2G8590 Aethionema arabicum HOM05D003955 ORTHO05D004684 1.0e-12 76.6 68 52.9
Glyma.08G051900 Glycine max HOM05D003955 ORTHO05D004684 1.0e-12 76.6 72 55.6
Lj6A27G8 Lonicera japonica HOM05D003955 ORTHO05D004684 1.0e-12 76.6 72 55.6
Sabra12G0034600 Salix brachista HOM05D003955 ORTHO05D004684 1.3e-12 76.3 72 50.0
unitig_899.g15402 Utricularia gibba HOM05D003955 ORTHO05D004684 1.3e-12 76.3 72 47.2
Psat7g000120 Pisum sativum HOM05D003955 ORTHO05D004684 1.7e-12 75.9 72 55.6
AUR62041238 Chenopodium quinoa HOM05D003955 ORTHO05D004684 2.3e-12 75.5 72 47.2
Cc04_g06570 Coffea canephora HOM05D003955 ORTHO05D004684 2.3e-12 75.5 72 50.0
Sc11g0004100 Simmondsia chinensis HOM05D003955 ORTHO05D004684 2.3e-12 75.5 72 54.2
BolC5t33521H Brassica oleracea HOM05D003955 ORTHO05D004684 2.9e-12 75.1 39 79.5
Carub.0005s0030 Capsella rubella HOM05D003955 ORTHO05D004684 2.9e-12 75.1 68 52.9
Nitab4.5_0001158g0090 Nicotiana tabacum HOM05D003955 ORTHO05D004684 3.8e-12 74.7 72 51.4
BcaC04g21593 Brassica carinata HOM05D003955 ORTHO05D004684 5.0e-12 74.3 68 52.9
Lsat_1_v5_gn_5_91461 Lactuca sativa HOM05D003955 ORTHO05D004684 6.6e-12 73.9 73 49.3
Sp2g12780 Schrenkiella parvula HOM05D003955 ORTHO05D004684 6.6e-12 73.9 40 85.0
Solyc03g119090.3 Solanum lycopersicum HOM05D003955 ORTHO05D004684 6.6e-12 73.9 72 51.4
Sopen03g037980 Solanum pennellii HOM05D003955 ORTHO05D004684 6.6e-12 73.9 72 51.4
Medtr8g106820 Medicago truncatula HOM05D003955 ORTHO05D004684 1.1e-11 73.2 72 54.2
TPR.G12969 Trifolium pratense HOM05D003955 ORTHO05D004684 1.1e-11 73.2 72 54.2
ATR0686G116 Amborella trichopoda HOM05D003955 ORTHO05D004684 1.5e-11 72.8 72 50.0
PGR083G2578 Punica granatum HOM05D003955 ORTHO05D004684 1.5e-11 72.8 73 52.1
Actinidia35113 Actinidia chinensis HOM05D003955 ORTHO05D004684 1.9e-11 72.4 72 50.0
Peaxi162Scf00683g00157 Petunia axillaris HOM05D003955 ORTHO05D004684 2.5e-11 72.0 72 50.0
PGSC0003DMG400005655 Solanum tuberosum HOM05D003955 ORTHO05D004684 2.5e-11 72.0 72 51.4
AL5G10290 Arabidopsis lyrata HOM05D003955 ORTHO05D004684 3.3e-11 71.6 68 50.0
Ca_17215_v3 Cicer arietinum L. HOM05D003955 ORTHO05D004684 3.3e-11 71.6 72 52.8
Ca_17217_v3 Cicer arietinum L. HOM05D003955 ORTHO05D004684 3.3e-11 71.6 72 52.8
Lalb_Chr05g0221841 Lupinus albus HOM05D003955 ORTHO05D004684 3.3e-11 71.6 72 52.8
AT2G01330 Arabidopsis thaliana HOM05D003955 ORTHO05D004684 4.2e-11 71.2 68 48.5
Lj5g0018825 Lotus japonicus HOM05D003955 ORTHO05D004684 4.2e-11 71.2 40 80.0
CARHR143850 Cardamine hirsuta HOM05D003955 ORTHO05D004684 5.5e-11 70.9 68 50.0
THA.LOC104823875 Tarenaya hassleriana HOM05D003955 ORTHO05D004684 5.5e-11 70.9 39 84.6
Lj4g0027787 Lotus japonicus HOM05D003955 ORTHO05D004684 7.2e-11 70.5 72 50.0
Phvul.007G038100 Phaseolus vulgaris HOM05D003955 ORTHO05D004684 1.2e-10 69.7 69 50.7
EL10Ac6g14239 Beta vulgaris HOM05D003955 ORTHO05D004684 2.8e-10 68.6 72 44.4
Manes.15G126700 Manihot esculenta HOM05D003955 ORTHO05D004684 2.8e-10 68.6 72 47.2
Nn4g24112 Nelumbo nucifera HOM05D003955 ORTHO05D004684 2.8e-10 68.6 37 86.5
Lj2A556T29 Lonicera japonica HOM05D003955 ORTHO05D004684 3.6e-10 68.2 72 50.0
BcaB07g30749 Brassica carinata HOM05D003955 ORTHO05D004684 4.7e-10 67.8 37 83.8
Ciclev10007782m.g Citrus clementina HOM05D003955 ORTHO05D004684 4.7e-10 67.8 72 48.6
Thhalv10000821m.g Eutrema salsugineum HOM05D003955 ORTHO05D004684 4.7e-10 67.8 37 83.8
Zm00001eb265330 Zea mays HOM05D003955 ORTHO05D004684 6.1e-10 67.4 52 59.6
AagrBONN_evm.TU.Sc2ySwM_340.157 Anthoceros agrestis HOM05D003955 ORTHO05D004684 1.4e-09 66.2 73 46.6
Phvul.002G327600 Phaseolus vulgaris HOM05D003955 ORTHO05D004684 1.4e-09 66.2 72 48.6
CBR_g51409 Chara braunii HOM05D003955 ORTHO05D004684 3.0e-09 65.1 72 47.2
MCO02G121 Micromonas commoda HOM05D003955 ORTHO05D004684 3.0e-09 65.1 74 41.9
Cpa.g.sc211.2 Carica papaya HOM05D003955 ORTHO05D004684 6.8e-09 63.9 34 88.2
Pp3c3_9960 Physcomitrium patens HOM05D003955 ORTHO05D004684 1.3e-07 59.7 72 41.7
Sopen07g034320 Solanum pennellii HOM05D000997 ORTHO05D000828 5.4e-06 54.3 72 33.3


User provided reference genes

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