Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0265461 Rosa chinensis HOM05D001473 ORTHO05D003934 4.5e-24 113.6 52 100.0
FAN14G1026 Fragaria x ananassa HOM05D001473 ORTHO05D003934 4.0e-12 73.9 57 68.4
FAN14G3813 Fragaria x ananassa HOM05D001473 ORTHO05D003934 1.5e-11 72.0 49 73.5
MD04G1229500 Malus domestica HOM05D001473 ORTHO05D003934 5.7e-11 70.1 38 84.2
vmacro19999 Vaccinium macrocarpon HOM05D001473 ORTHO05D003934 7.5e-11 69.7 38 84.2
Atru.chr2.968 Acer truncatum HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
Actinidia40002 Actinidia chinensis HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
Aa31LG1G5220 Aethionema arabicum HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
ATR0736G172 Amborella trichopoda HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
AagrBONN_evm.TU.Sc2ySwM_368.3249 Anthoceros agrestis HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
Aqoxy2G03659 Aquilegia oxysepala HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
AL1G20320 Arabidopsis lyrata HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
AT1G09770 Arabidopsis thaliana HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
arahy.Tifrunner.gnm1.ann1.33TMW6 Arachis hypogaea HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
arahy.Tifrunner.gnm1.ann1.8L6PVU Arachis hypogaea HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
arahy.Tifrunner.gnm1.ann1.HJHY8E Arachis hypogaea HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
arahy.Tifrunner.gnm1.ann1.R6YD0H Arachis hypogaea HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
EL10Ac4g09571 Beta vulgaris HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
A06p06440 Brassica napus HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
A08p34350 Brassica napus HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
C05p07840 Brassica napus HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
C08p13180 Brassica napus HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
BolC5t29535H Brassica oleracea HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
BolC8t48947H Brassica oleracea HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
BraA06t23855Z Brassica rapa HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
BraA08t35347Z Brassica rapa HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
CSS0041231 Camellia sinensis var. sinensis HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
CSS0044349 Camellia sinensis var. sinensis HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
CANSAT54G0715 Cannabis sativa HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
Carub.0001s0911 Capsella rubella HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
CAN.G1609.5 Capsicum annuum HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
CARHR009740 Cardamine hirsuta HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
Cpa.g.sc306.1 Carica papaya HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
Cfa002922 Carpinus fangiana HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
CiPaw.04G081100 Carya illinoinensis HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
CDE04G2649 Ceratophyllum demersum HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
CDE07G0773 Ceratophyllum demersum HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
CBR_g39826 Chara braunii HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
AUR62000484 Chenopodium quinoa HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
AUR62006826 Chenopodium quinoa HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
Ca_09455_v3 Cicer arietinum L. HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
ClCG06G009620 Citrullus lanatus HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
Ciclev10018691m.g Citrus clementina HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
Cc02_g08900 Coffea canephora HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
COL.COLO4_15470 Corchorus olitorius HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
Haze_25283 Corylus avellana HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
MELO3C017522.2 Cucumis melo HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
CsaV3_1G045350 Cucumis sativus L. HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
CsaV3_7G031760 Cucumis sativus L. HOM05D004228 ORTHO05D003934 1.3e-10 68.9 37 86.5
Dinv18449 Davidia involucrata HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
Duzib106G1036 Durio zibethinus HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
Duzib128G0032 Durio zibethinus HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
Duzib177G0283 Durio zibethinus HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
ECA233G2045 Erigeron canadensis HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
Migut.F01544 Erythranthe guttata HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
Eucgr.B01570 Eucalyptus grandis HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
Thhalv10006800m.g Eutrema salsugineum HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
FvH4_6g01950 Fragaria vesca HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
FAN02G1215 Fragaria x ananassa HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
FAN05G0714 Fragaria x ananassa HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
FAN05G5604 Fragaria x ananassa HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
FAN09G1753 Fragaria x ananassa HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
Glyma.10G165900 Glycine max HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
Glyma.20G223300 Glycine max HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
Gohir.A11G247950 Gossypium hirsutum HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
Gohir.A13G167900 Gossypium hirsutum HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
Gohir.D11G258300 Gossypium hirsutum HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
Gohir.D13G173300 Gossypium hirsutum HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
Gorai.007G276500 Gossypium raimondii HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
Gorai.013G187200 Gossypium raimondii HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
HanXRQChr08g0225461 Helianthus annuus HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
Lsat_1_v5_gn_8_2880 Lactuca sativa HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
Lj1g0012496 Lotus japonicus HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
Lalb_Chr15g0076051 Lupinus albus HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
Lalb_Chr18g0044021 Lupinus albus HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
MD12G1246400 Malus domestica HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
Manes.08G139000 Manihot esculenta HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
Manes.09G148400 Manihot esculenta HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
Mapoly0014s0195 Marchantia polymorpha HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
Medtr5g010470 Medicago truncatula HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
Medtr7g115550 Medicago truncatula HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
MCO01G096 Micromonas commoda HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
MCO01G097 Micromonas commoda HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
Os04g0348300 Oryza sativa ssp. japonica HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
PSO017G2945 Papaver somniferum HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
PSO063G2917 Papaver somniferum HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
Peaxi162Scf00135g00313 Petunia axillaris HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
Phvul.004G090900 Phaseolus vulgaris HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
Phvul.L001860 Phaseolus vulgaris HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
Pp3c3_17580 Physcomitrium patens HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
Psat3g006920 Pisum sativum HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
Potri.013G046300 Populus trichocarpa HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
Potri.019G018400 Populus trichocarpa HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
Prupe.6G349400 Prunus persica HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
PGR031G3359 Punica granatum HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
QL03p030821 Quercus lobata HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
Rhsim05G0175000 Rhododendron simsii HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
RcHm_v2.0_Chr3g0449801 Rosa chinensis HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
Sabra19G0028000 Salix brachista HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
Sabra19G0030400 Salix brachista HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
SalBow1G0011 Salvia bowleyana HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
SHI00615 Sapria himalayana HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
Sp1g08360 Schrenkiella parvula HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
Sed0003092 Sechium edule HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
SMO196G0202 Selaginella moellendorffii HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
SMO234G0053 Selaginella moellendorffii HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
Hund07267 Selenicereus undatus HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
SEGI_20641 Sequoiadendron giganteum HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
Sc08g0009190 Simmondsia chinensis HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
Solyc04g009950.3 Solanum lycopersicum HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
Sopen04g005080 Solanum pennellii HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
PGSC0003DMG400011500 Solanum tuberosum HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
SGA_v2.0_scaffold1G00525 Striga asiatica HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
THA.LOC104805779 Tarenaya hassleriana HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
THA.LOC104823763 Tarenaya hassleriana HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
Thecc.05G271600 Theobroma cacao HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
TPR.G6939 Trifolium pratense HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
TWI31G0266 Tripterygium wilfordii HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
TWI79G0745 Tripterygium wilfordii HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
TAR362G0879 Trochodendron aralioides HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
unitig_0.g2788 Utricularia gibba HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
unitig_747.g21794 Utricularia gibba HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
HPP92_023314 Vanilla planifolia HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
VMungo0464G0145 Vigna mungo HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
GSVIVG01023527001 Vitis vinifera HOM05D001473 ORTHO05D003934 1.3e-10 68.9 37 86.5
Peaxi162Scf00304g00074 Petunia axillaris HOM05D001473 ORTHO05D003934 4.8e-10 67.0 38 78.9
Thhalv10001097m.g Eutrema salsugineum HOM05D001473 ORTHO05D003934 8.3e-10 66.2 37 83.8
PRCOL_00004307 Prasinoderma coloniale HOM05D001473 ORTHO05D003934 1.4e-09 65.5 37 78.4
Cre03.g197350 Chlamydomonas reinhardtii HOM05D001473 ORTHO05D003934 1.8e-09 65.1 37 81.1
Migut.B01119 Erythranthe guttata HOM05D001473 ORTHO05D003934 1.8e-09 65.1 37 81.1
SMO196G0272 Selaginella moellendorffii HOM05D001473 ORTHO05D003934 7.0e-09 63.2 37 78.4
BcaC04g22223 Brassica carinata HOM05D001473 ORTHO05D003934 2.0e-08 61.6 37 78.4
A09p17580 Brassica napus HOM05D001473 ORTHO05D003934 2.0e-08 61.6 37 78.4
C09p21880 Brassica napus HOM05D001473 ORTHO05D003934 2.0e-08 61.6 37 78.4
BolC1t01331H Brassica oleracea HOM05D001473 ORTHO05D003934 2.0e-08 61.6 37 78.4
BolC9t55093H Brassica oleracea HOM05D001473 ORTHO05D003934 2.0e-08 61.6 37 78.4
BraA09t37388Z Brassica rapa HOM05D001473 ORTHO05D003934 2.0e-08 61.6 37 78.4
Lsat_1_v5_gn_5_132420 Lactuca sativa HOM05D001473 ORTHO05D003934 2.7e-08 61.2 36 75.0
BcaB07g31211 Brassica carinata HOM05D001473 ORTHO05D003934 7.7e-08 59.7 37 75.7
RcHm_v2.0_Chr5g0032281 Rosa chinensis HOM05D001473 ORTHO05D003934 1.0e-07 59.3 38 71.1
SMO196G0113 Selaginella moellendorffii HOM05D001473 ORTHO05D003934 1.7e-07 58.5 37 75.7
PSO210G0556 Papaver somniferum HOM05D001473 ORTHO05D003934 2.9e-07 57.8 39 66.7
Lsat_1_v5_gn_5_135881 Lactuca sativa HOM05D001473 ORTHO05D003934 5.0e-07 57.0 37 70.3
Lsat_1_v5_gn_8_72320 Lactuca sativa HOM05D001473 ORTHO05D003934 5.0e-07 57.0 37 70.3
Sc03g0006090 Simmondsia chinensis HOM05D001473 ORTHO05D003934 6.5e-07 56.6 37 73.0
Cfa025479 Carpinus fangiana HOM05D001473 ORTHO05D003934 2.5e-06 54.7 37 62.2
Haze_26225 Corylus avellana HOM05D001473 ORTHO05D003934 2.5e-06 54.7 36 66.7
Lj5g0018401 Lotus japonicus HOM05D001473 ORTHO05D003934 3.2e-06 54.3 33 78.8


User provided reference genes

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