Gene: Pp3c3_17580

General Information

Structural Information

  • Species Physcomitrium patens
  • Gene Identifier Pp3c3_17580
  • Transcript Identifier Pp3c3_17580V3.1
  • Gene Type Coding gene
  • Location Chr03 : 12219561-12223848 : negative

Gene Family Information

  • ID HOM05D001473
  • #Genes/#Species 430/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • name Pp3c3_17580V3.1
  • pacid 32945059
  • alias Phypa_228394
  • alias Phpat.003G067400
  • alias Pp1s641_1V6
  • uniprot A9U5D1

Descriptions

  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0008380
IEA
GOA DatabaseRNA splicing
GO:0000398
IBA
GOA DatabasemRNA splicing, via spliceosome
GO:0002758
ISO
PLAZA Integrative Orthologyinnate immune response-activating signal transduction AT1G09770
GO:0006355
ISO
PLAZA Integrative Orthologyregulation of transcription, DNA-templated AT1G09770
GO:0006520
ISO
PLAZA Homology (enrichment)cellular amino acid metabolic process HOM05D001473
GO:0050832
ISO
PLAZA Integrative Orthologydefense response to fungus AT1G09770
GO:0042742
ISO
PLAZA Integrative Orthologydefense response to bacterium AT1G09770

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G09770
GO:0003824
ISO
PLAZA Homology (enrichment)catalytic activity HOM05D001473
GO:0016829
ISO
PLAZA Homology (enrichment)lyase activity HOM05D001473

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005681
IBA
IEA
GOA Databasespliceosomal complex
GO:0000974
IBA
GOA DatabasePrp19 complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001005 SANT/Myb domain
IPR021786 Pre-mRNA splicing factor component Cdc5p/Cef1, C-terminal
IPR009057 Homeobox-like domain superfamily
Mapman id Description
16.2.5.1.2 RNA processing.pre-mRNA splicing.spliceosome-associated non-snRNP MOS4-associated complex (MAC).core components.component CDC5/MAC1