Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0260721 Rosa chinensis HOM05D004625 ORTHO05D006054 7.6e-20 99.4 45 100.0
RcHm_v2.0_Chr6g0260791 Rosa chinensis HOM05D004625 ORTHO05D006054 4.6e-17 90.1 45 91.1
FvH4_2g07370 Fragaria vesca HOM05D004625 ORTHO05D006054 6.0e-17 89.7 45 91.1
FAN24G2498 Fragaria x ananassa HOM05D004625 ORTHO05D006054 6.0e-17 89.7 45 91.1
Lalb_Chr19g0138511 Lupinus albus HOM05D004625 ORTHO05D006054 1.3e-16 88.6 45 84.4
Prupe.8G112500 Prunus persica HOM05D004625 ORTHO05D006054 1.3e-16 88.6 45 88.9
Rhsim05G0078500 Rhododendron simsii HOM05D004625 ORTHO05D006054 1.3e-16 88.6 45 88.9
GSVIVG01031879001 Vitis vinifera HOM05D004625 ORTHO05D006054 1.3e-16 88.6 45 86.7
CANSAT25G0492 Cannabis sativa HOM05D004625 ORTHO05D006054 1.8e-16 88.2 45 86.7
FAN27G0869 Fragaria x ananassa HOM05D004625 ORTHO05D006054 1.8e-16 88.2 45 88.9
FAN15G2126 Fragaria x ananassa HOM05D004625 ORTHO05D006054 2.3e-16 87.8 45 88.9
Migut.B00290 Erythranthe guttata HOM05D004625 ORTHO05D006054 3.0e-16 87.4 45 84.4
FAN20G2900 Fragaria x ananassa HOM05D004625 ORTHO05D006054 5.1e-16 86.7 45 86.7
Peaxi162Scf00016g01337 Petunia axillaris HOM05D004625 ORTHO05D006054 5.1e-16 86.7 45 82.2
Ca_20818_v3 Cicer arietinum L. HOM05D004625 ORTHO05D006054 6.7e-16 86.3 45 84.4
Aqoxy6G00945 Aquilegia oxysepala HOM05D004625 ORTHO05D006054 8.7e-16 85.9 45 82.2
Cfa004948 Carpinus fangiana HOM05D004625 ORTHO05D006054 8.7e-16 85.9 45 82.2
Solyc01g109080.3 Solanum lycopersicum HOM05D004625 ORTHO05D006054 8.7e-16 85.9 45 82.2
Sopen01g051280 Solanum pennellii HOM05D004625 ORTHO05D006054 8.7e-16 85.9 45 82.2
arahy.Tifrunner.gnm1.ann1.5EIT1K Arachis hypogaea HOM05D004625 ORTHO05D006054 1.1e-15 85.5 45 84.4
Psat7g207400 Pisum sativum HOM05D004625 ORTHO05D006054 1.1e-15 85.5 45 84.4
QL11p039255 Quercus lobata HOM05D004625 ORTHO05D006054 1.5e-15 85.1 44 79.5
TAR381G1538 Trochodendron aralioides HOM05D004625 ORTHO05D006054 1.5e-15 85.1 45 84.4
Atru.chr5.2894 Acer truncatum HOM05D004625 ORTHO05D006054 2.5e-15 84.3 45 82.2
Actinidia27924 Actinidia chinensis HOM05D004625 ORTHO05D006054 2.5e-15 84.3 45 80.0
Cc02_g18180 Coffea canephora HOM05D004625 ORTHO05D006054 2.5e-15 84.3 45 82.2
Phvul.011G050300 Phaseolus vulgaris HOM05D004625 ORTHO05D006054 2.5e-15 84.3 45 82.2
PGR142G2954 Punica granatum HOM05D004625 ORTHO05D006054 2.5e-15 84.3 45 84.4
Sp3g29240 Schrenkiella parvula HOM05D004625 ORTHO05D006054 2.5e-15 84.3 45 80.0
ECA240G0059 Erigeron canadensis HOM05D004625 ORTHO05D006054 3.3e-15 84.0 45 77.8
Medtr4g068580 Medicago truncatula HOM05D004625 ORTHO05D006054 3.3e-15 84.0 45 82.2
Sc14g0001720 Simmondsia chinensis HOM05D004625 ORTHO05D006054 3.3e-15 84.0 45 80.0
THA.LOC104807342 Tarenaya hassleriana HOM05D004625 ORTHO05D006054 3.3e-15 84.0 45 80.0
TPR.G10228 Trifolium pratense HOM05D004625 ORTHO05D006054 3.3e-15 84.0 45 82.2
AL3G47770 Arabidopsis lyrata HOM05D004625 ORTHO05D006054 4.3e-15 83.6 45 80.0
Thhalv10022517m.g Eutrema salsugineum HOM05D004625 ORTHO05D006054 4.3e-15 83.6 45 80.0
Lj3g0006928 Lotus japonicus HOM05D004625 ORTHO05D006054 4.3e-15 83.6 45 82.2
Ciclev10027657m.g Citrus clementina HOM05D004625 ORTHO05D006054 5.7e-15 83.2 45 82.2
DCAR_003629 Daucus carota HOM05D004625 ORTHO05D006054 5.7e-15 83.2 45 80.0
Gohir.D01G172900 Gossypium hirsutum HOM05D004625 ORTHO05D006054 5.7e-15 83.2 45 82.2
Gorai.002G214500 Gossypium raimondii HOM05D004625 ORTHO05D006054 5.7e-15 83.2 45 82.2
Nn5g29411 Nelumbo nucifera HOM05D004625 ORTHO05D006054 5.7e-15 83.2 45 82.2
Glyma.11G123500 Glycine max HOM05D004625 ORTHO05D006054 7.4e-15 82.8 45 80.0
Manes.15G145800 Manihot esculenta HOM05D004625 ORTHO05D006054 7.4e-15 82.8 45 75.6
CsaV3_2G014290 Cucumis sativus L. HOM05D004625 ORTHO05D006054 9.6e-15 82.4 45 82.2
Gohir.A01G181800 Gossypium hirsutum HOM05D004625 ORTHO05D006054 9.6e-15 82.4 45 80.0
MBI16_g13376_MAGBIO Magnolia biondii HOM05D004625 ORTHO05D006054 9.6e-15 82.4 45 77.8
CARHR106270 Cardamine hirsuta HOM05D004625 ORTHO05D006054 1.3e-14 82.0 45 77.8
MD10G1086500 Malus domestica HOM05D004625 ORTHO05D006054 1.3e-14 82.0 45 82.2
TWI75G0995 Tripterygium wilfordii HOM05D004625 ORTHO05D006054 1.3e-14 82.0 44 79.5
Thecc.02G028700 Theobroma cacao HOM05D004625 ORTHO05D006054 1.6e-14 81.6 45 80.0
Potri.004G147800 Populus trichocarpa HOM05D004625 ORTHO05D006054 2.1e-14 81.3 45 80.0
EL10Ac9g21791 Beta vulgaris HOM05D004625 ORTHO05D006054 2.8e-14 80.9 45 77.8
PSO541G5018 Papaver somniferum HOM05D004625 ORTHO05D006054 2.8e-14 80.9 45 80.0
HanXRQChr03g0074341 Helianthus annuus HOM05D004625 ORTHO05D006054 4.8e-14 80.1 45 75.6
ClCG09G017690 Citrullus lanatus HOM05D004625 ORTHO05D006054 6.2e-14 79.7 45 80.0
Ah.01g019860 Amaranthus hybridus HOM05D004625 ORTHO05D006054 1.1e-13 79.0 45 77.8
CiPaw.05G058800 Carya illinoinensis HOM05D004625 ORTHO05D006054 1.1e-13 79.0 45 75.6
Eucgr.I01219 Eucalyptus grandis HOM05D004625 ORTHO05D006054 1.4e-13 78.6 45 73.3
Duzib052G1066 Durio zibethinus HOM05D004625 ORTHO05D006054 1.8e-13 78.2 45 75.6
A07p04860 Brassica napus HOM05D004625 ORTHO05D006054 2.4e-13 77.8 46 73.9
BraA07t28278Z Brassica rapa HOM05D004625 ORTHO05D006054 2.4e-13 77.8 46 73.9
unitig_0.g75 Utricularia gibba HOM05D004625 ORTHO05D006054 2.4e-13 77.8 45 75.6
Sed0024635 Sechium edule HOM05D004625 ORTHO05D006054 3.1e-13 77.4 45 77.8
C07p07830 Brassica napus HOM05D004625 ORTHO05D006054 5.3e-13 76.6 46 71.7
BolC7t41201H Brassica oleracea HOM05D004625 ORTHO05D006054 5.3e-13 76.6 46 71.7
ATR0733G016 Amborella trichopoda HOM05D004625 ORTHO05D006054 2.0e-12 74.7 45 68.9
SEGI_40710 Sequoiadendron giganteum HOM05D004625 ORTHO05D006054 2.0e-12 74.7 44 70.5
AagrBONN_evm.TU.Sc2ySwM_362.351 Anthoceros agrestis HOM05D004625 ORTHO05D006054 7.6e-12 72.8 44 68.2
Mapoly0101s0045 Marchantia polymorpha HOM05D004625 ORTHO05D006054 7.6e-12 72.8 45 64.4
Zm00001eb056540 Zea mays HOM05D004625 ORTHO05D006054 1.3e-11 72.0 44 70.5
Os03g0738200 Oryza sativa ssp. japonica HOM05D004625 ORTHO05D006054 2.2e-11 71.2 44 70.5
Hma1.2p1_1353F.1_g277680 Hydrangea macrophylla HOM05D004625 ORTHO05D006054 2.9e-11 70.9 40 82.5
AUR62011397 Chenopodium quinoa HOM05D004625 ORTHO05D006054 1.9e-10 68.2 39 79.5
AUR62016661 Chenopodium quinoa HOM05D004625 ORTHO05D006054 5.5e-10 66.6 39 76.9
RcHm_v2.0_Chr6g0260001 Rosa chinensis HOM05D004625 ORTHO05D006054 9.3e-10 65.9 38 81.6
SalBow6G1518 Salvia bowleyana HOM05D004625 ORTHO05D006054 1.6e-09 65.1 38 73.7
Dinv42107 Davidia involucrata HOM05D004625 ORTHO05D006054 2.1e-09 64.7 39 76.9
RcHm_v2.0_Chr6g0260231 Rosa chinensis HOM05D004625 ORTHO05D006054 2.1e-09 64.7 38 76.3
MELO3C021931.2 Cucumis melo HOM05D004625 ORTHO05D006054 2.7e-09 64.3 38 78.9
vmacro19476 Vaccinium macrocarpon HOM05D004625 ORTHO05D006054 2.7e-09 64.3 36 80.6
Sabra04G0098100 Salix brachista HOM05D004625 ORTHO05D006054 6.1e-09 63.2 39 74.4
Pp3c10_4250 Physcomitrium patens HOM05D004625 ORTHO05D006054 7.9e-09 62.8 45 53.3
BcaC06g36102 Brassica carinata HOM05D004625 ORTHO05D006054 2.2e-06 54.7 38 63.2


User provided reference genes

Program Settings