Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0260691 Rosa chinensis HOM05D004625 ORTHO05D006054 9.6e-142 506.9 273 100.0
FAN20G2900 Fragaria x ananassa HOM05D004625 ORTHO05D006054 6.7e-127 457.6 272 86.4
RcHm_v2.0_Chr6g0260791 Rosa chinensis HOM05D004625 ORTHO05D006054 7.4e-126 454.1 272 91.9
FvH4_2g07370 Fragaria vesca HOM05D004625 ORTHO05D006054 5.0e-122 441.4 272 88.2
FAN27G0869 Fragaria x ananassa HOM05D004625 ORTHO05D006054 8.5e-122 440.7 272 88.2
FAN15G2126 Fragaria x ananassa HOM05D004625 ORTHO05D006054 1.4e-119 433.3 272 87.1
Cfa004948 Carpinus fangiana HOM05D004625 ORTHO05D006054 1.8e-119 433.0 281 82.9
Thecc.02G028700 Theobroma cacao HOM05D004625 ORTHO05D006054 8.2e-117 424.1 298 76.8
Prupe.8G112500 Prunus persica HOM05D004625 ORTHO05D006054 9.1e-116 420.6 238 90.3
MD10G1086500 Malus domestica HOM05D004625 ORTHO05D006054 5.9e-115 417.9 238 89.5
Atru.chr5.2894 Acer truncatum HOM05D004625 ORTHO05D006054 2.1e-112 409.5 238 86.1
CiPaw.05G058800 Carya illinoinensis HOM05D004625 ORTHO05D006054 4.7e-112 408.3 238 86.1
Ciclev10027657m.g Citrus clementina HOM05D004625 ORTHO05D006054 1.4e-111 406.8 238 85.7
CANSAT25G0492 Cannabis sativa HOM05D004625 ORTHO05D006054 2.6e-110 402.5 279 76.3
Potri.004G147800 Populus trichocarpa HOM05D004625 ORTHO05D006054 4.4e-110 401.7 295 72.9
Gohir.D01G172900 Gossypium hirsutum HOM05D004625 ORTHO05D006054 5.7e-110 401.4 238 85.3
QL11p039255 Quercus lobata HOM05D004625 ORTHO05D006054 1.7e-109 399.8 239 85.8
Gohir.A01G181800 Gossypium hirsutum HOM05D004625 ORTHO05D006054 2.2e-109 399.4 238 84.9
PGR142G2954 Punica granatum HOM05D004625 ORTHO05D006054 2.8e-109 399.1 293 72.0
Eucgr.I01219 Eucalyptus grandis HOM05D004625 ORTHO05D006054 6.3e-109 397.9 301 71.1
Lj5A204T93 Lonicera japonica HOM05D004625 ORTHO05D006054 3.1e-108 395.6 283 78.8
Sabra04G0098100 Salix brachista HOM05D004625 ORTHO05D006054 3.5e-107 392.1 238 83.2
Cpa.g.sc62.82 Carica papaya HOM05D004625 ORTHO05D006054 4.5e-107 391.7 307 70.7
TWI75G0995 Tripterygium wilfordii HOM05D004625 ORTHO05D006054 3.2e-105 385.6 238 81.5
GSVIVG01031879001 Vitis vinifera HOM05D004625 ORTHO05D006054 3.2e-105 385.6 238 81.5
Dinv42107 Davidia involucrata HOM05D004625 ORTHO05D006054 5.5e-105 384.8 238 81.9
FAN24G2498 Fragaria x ananassa HOM05D004625 ORTHO05D006054 7.2e-105 384.4 263 80.6
Manes.15G145800 Manihot esculenta HOM05D004625 ORTHO05D006054 9.4e-105 384.0 240 82.1
Rhsim05G0078500 Rhododendron simsii HOM05D004625 ORTHO05D006054 3.6e-104 382.1 298 71.5
Actinidia27924 Actinidia chinensis HOM05D004625 ORTHO05D006054 1.4e-103 380.2 237 80.6
RcHm_v2.0_Chr6g0259981 Rosa chinensis HOM05D004625 ORTHO05D006054 2.3e-103 379.4 197 98.0
MELO3C021931.2 Cucumis melo HOM05D004625 ORTHO05D006054 8.8e-103 377.5 238 79.0
CsaV3_2G014290 Cucumis sativus L. HOM05D004625 ORTHO05D006054 1.1e-102 377.1 238 79.0
ClCG09G017690 Citrullus lanatus HOM05D004625 ORTHO05D006054 1.5e-102 376.7 238 79.4
TAR381G0127 Trochodendron aralioides HOM05D004625 ORTHO05D006054 2.0e-102 376.3 238 78.6
arahy.Tifrunner.gnm1.ann1.33V1D5 Arachis hypogaea HOM05D004625 ORTHO05D006054 2.6e-102 375.9 238 79.8
arahy.Tifrunner.gnm1.ann1.5EIT1K Arachis hypogaea HOM05D004625 ORTHO05D006054 2.6e-102 375.9 238 79.8
PSO541G5018 Papaver somniferum HOM05D004625 ORTHO05D006054 1.7e-101 373.2 282 69.1
ECA240G0059 Erigeron canadensis HOM05D004625 ORTHO05D006054 2.8e-101 372.5 277 70.0
Lsat_1_v5_gn_9_109140 Lactuca sativa HOM05D004625 ORTHO05D006054 2.8e-101 372.5 237 79.3
Peaxi162Scf00016g01337 Petunia axillaris HOM05D004625 ORTHO05D006054 3.1e-100 369.0 276 75.0
Nn5g29411 Nelumbo nucifera HOM05D004625 ORTHO05D006054 4.1e-100 368.6 272 75.7
Sed0024635 Sechium edule HOM05D004625 ORTHO05D006054 5.3e-100 368.2 280 67.9
Oeu035506.5 Olea europaea HOM05D004625 ORTHO05D006054 1.6e-99 366.7 237 78.1
Cc02_g18180 Coffea canephora HOM05D004625 ORTHO05D006054 2.0e-99 366.3 237 77.6
DCAR_003628 Daucus carota HOM05D004625 ORTHO05D006054 3.5e-99 365.5 291 69.4
SGA_v2.0_scaffold58G20593 Striga asiatica HOM05D004625 ORTHO05D006054 1.0e-98 364.0 288 70.8
AUR62011397 Chenopodium quinoa HOM05D004625 ORTHO05D006054 2.2e-98 362.8 283 70.0
MBI16_g13376_MAGBIO Magnolia biondii HOM05D004625 ORTHO05D006054 2.9e-98 362.5 273 73.6
Lalb_Chr19g0138511 Lupinus albus HOM05D004625 ORTHO05D006054 6.5e-98 361.3 238 76.9
Medtr4g068580 Medicago truncatula HOM05D004625 ORTHO05D006054 9.4e-97 357.5 272 69.1
Sopen01g051280 Solanum pennellii HOM05D004625 ORTHO05D006054 1.2e-96 357.1 238 76.5
Solyc01g109080.3 Solanum lycopersicum HOM05D004625 ORTHO05D006054 4.7e-96 355.1 236 76.7
Ca_20826_v3 Cicer arietinum L. HOM05D004625 ORTHO05D006054 8.0e-96 354.4 272 68.4
Sc14g0001720 Simmondsia chinensis HOM05D004625 ORTHO05D006054 2.3e-95 352.8 268 68.7
Psat7g207400 Pisum sativum HOM05D004625 ORTHO05D006054 4.0e-95 352.1 272 68.4
AUR62016661 Chenopodium quinoa HOM05D004625 ORTHO05D006054 6.7e-95 351.3 238 72.3
SalBow6G1518 Salvia bowleyana HOM05D004625 ORTHO05D006054 6.7e-95 351.3 237 73.8
Phvul.011G050300 Phaseolus vulgaris HOM05D004625 ORTHO05D006054 3.3e-94 349.0 274 69.3
EL10Ac9g21791 Beta vulgaris HOM05D004625 ORTHO05D006054 7.5e-94 347.8 238 72.7
HanXRQChr03g0074341 Helianthus annuus HOM05D004625 ORTHO05D006054 9.7e-94 347.4 237 73.4
Glyma.11G123500 Glycine max HOM05D004625 ORTHO05D006054 1.8e-92 343.2 272 69.5
Migut.B00290 Erythranthe guttata HOM05D004625 ORTHO05D006054 2.4e-92 342.8 238 72.3
AL3G47770 Arabidopsis lyrata HOM05D004625 ORTHO05D006054 7.0e-92 341.3 303 60.1
Ah.01g019860 Amaranthus hybridus HOM05D004625 ORTHO05D006054 1.6e-91 340.1 238 71.0
Haze_02463 Corylus avellana HOM05D004625 ORTHO05D006054 1.6e-91 340.1 203 84.7
Lj3g0006928 Lotus japonicus HOM05D004625 ORTHO05D006054 1.7e-90 336.7 273 67.0
Duzib052G1066 Durio zibethinus HOM05D004625 ORTHO05D006054 1.9e-89 333.2 194 86.1
CARHR106270 Cardamine hirsuta HOM05D004625 ORTHO05D006054 4.2e-89 332.0 308 57.8
Gorai.002G214500 Gossypium raimondii HOM05D004625 ORTHO05D006054 6.1e-88 328.2 189 87.8
THA.LOC104807342 Tarenaya hassleriana HOM05D004625 ORTHO05D006054 4.0e-87 325.5 238 68.9
Aqoxy6G00945 Aquilegia oxysepala HOM05D004625 ORTHO05D006054 5.7e-86 321.6 239 70.7
Hma1.2p1_1353F.1_g277680 Hydrangea macrophylla HOM05D004625 ORTHO05D006054 4.5e-83 312.0 198 78.3
ATR0733G016 Amborella trichopoda HOM05D004625 ORTHO05D006054 5.9e-83 311.6 273 59.7
Sp3g29240 Schrenkiella parvula HOM05D004625 ORTHO05D006054 9.5e-81 304.3 238 65.5
Thhalv10022517m.g Eutrema salsugineum HOM05D004625 ORTHO05D006054 4.7e-80 302.0 238 65.5
BraA07t28278Z Brassica rapa HOM05D004625 ORTHO05D006054 8.9e-79 297.7 238 65.1
A07p04860 Brassica napus HOM05D004625 ORTHO05D006054 1.2e-78 297.4 238 65.5
BcaC06g36102 Brassica carinata HOM05D004625 ORTHO05D006054 8.3e-77 291.2 238 63.9
C07p07830 Brassica napus HOM05D004625 ORTHO05D006054 8.3e-77 291.2 238 63.9
BolC7t41201H Brassica oleracea HOM05D004625 ORTHO05D006054 8.3e-77 291.2 238 63.9
HPP92_012734 Vanilla planifolia HOM05D004625 ORTHO05D006054 7.8e-75 284.6 287 54.0
Haze_02461 Corylus avellana HOM05D004625 ORTHO05D006054 9.5e-73 277.7 160 86.9
Nitab4.5_0004946g0030 Nicotiana tabacum HOM05D004625 ORTHO05D006054 3.6e-72 275.8 183 76.0
TPR.G10228 Trifolium pratense HOM05D004625 ORTHO05D006054 2.4e-68 263.1 189 72.5
arahy.Tifrunner.gnm1.ann1.1QVL6J Arachis hypogaea HOM05D004625 ORTHO05D006054 9.2e-60 234.6 148 77.7
unitig_0.g76 Utricularia gibba HOM05D004625 ORTHO05D006054 3.0e-50 203.0 196 56.1
Zm00001eb056540 Zea mays HOM05D004625 ORTHO05D006054 1.5e-49 200.7 265 46.0
SEGI_25812 Sequoiadendron giganteum HOM05D004625 ORTHO05D006054 2.5e-49 199.9 163 62.0
Mapoly0101s0045 Marchantia polymorpha HOM05D004625 ORTHO05D006054 8.7e-42 174.9 162 56.8
RcHm_v2.0_Chr6g0260571 Rosa chinensis HOM05D004625 ORTHO05D006054 1.1e-41 174.5 97 88.7
Pp3c10_4250 Physcomitrium patens HOM05D004625 ORTHO05D006054 1.5e-41 174.1 233 46.4
CDE02G3219 Ceratophyllum demersum HOM05D004625 ORTHO05D006054 1.5e-38 164.1 119 68.1
Aa31LG8G13450 Aethionema arabicum HOM05D004625 ORTHO05D023368 1.1e-36 157.9 108 72.2
AagrBONN_evm.TU.Sc2ySwM_362.351 Anthoceros agrestis HOM05D004625 ORTHO05D006054 3.7e-24 116.3 132 45.5
Lsat_1_v5_gn_1_115820 Lactuca sativa HOM05D005112 ORTHO05D036434 1.7e-21 107.5 70 71.4
arahy.Tifrunner.gnm1.ann1.CLIV5D Arachis hypogaea HOM05D004625 ORTHO05D006054 2.9e-21 106.7 150 44.0
Aa31LG8G13460 Aethionema arabicum HOM05D004625 ORTHO05D006054 1.8e-18 97.4 66 69.7
vmacro19476 Vaccinium macrocarpon HOM05D004625 ORTHO05D006054 3.0e-18 96.7 60 75.0
vmacro19475 Vaccinium macrocarpon HOM05D004625 ORTHO05D023368 1.1e-17 94.7 95 58.9
Lsat_1_v5_gn_2_30340 Lactuca sativa HOM05D005112 ORTHO05D006681 4.3e-17 92.8 96 53.1
CAN.G322.88 Capsicum annuum HOM05D004625 ORTHO05D006054 3.7e-16 89.7 60 70.0
COL.COLO4_17776 Corchorus olitorius HOM05D004625 ORTHO05D006054 3.2e-12 76.6 41 90.2
Hma1.2p1_1353F.1_g277700 Hydrangea macrophylla HOM05D004625 ORTHO05D023368 7.1e-12 75.5 75 74.7
Hma1.2p1_2724F.1_g327540 Hydrangea macrophylla HOM05D004625 ORTHO05D023368 3.0e-10 70.1 38 86.8
TPR.G10239 Trifolium pratense HOM05D004625 ORTHO05D023368 4.3e-09 66.2 41 78.0


User provided reference genes

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