Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0260231 Rosa chinensis HOM05D004625 ORTHO05D006054 3.5e-64 248.1 120 100.0
RcHm_v2.0_Chr6g0260791 Rosa chinensis HOM05D004625 ORTHO05D006054 5.9e-35 151.0 118 67.8
FvH4_2g07370 Fragaria vesca HOM05D004625 ORTHO05D006054 4.1e-28 128.3 117 61.5
FAN24G2498 Fragaria x ananassa HOM05D004625 ORTHO05D006054 4.1e-28 128.3 117 61.5
FAN15G2126 Fragaria x ananassa HOM05D004625 ORTHO05D006054 4.5e-27 124.8 117 59.8
Prupe.8G112500 Prunus persica HOM05D004625 ORTHO05D006054 2.2e-26 122.5 117 59.0
RcHm_v2.0_Chr6g0260001 Rosa chinensis HOM05D004625 ORTHO05D006054 3.8e-26 121.7 109 64.2
FAN20G2900 Fragaria x ananassa HOM05D004625 ORTHO05D006054 6.5e-26 120.9 117 56.4
FAN27G0869 Fragaria x ananassa HOM05D004625 ORTHO05D006054 1.1e-25 120.2 117 58.1
MD10G1086500 Malus domestica HOM05D004625 ORTHO05D006054 9.7e-22 107.1 117 53.8
Ciclev10027657m.g Citrus clementina HOM05D004625 ORTHO05D006054 2.9e-18 95.5 122 46.7
Gohir.D01G172900 Gossypium hirsutum HOM05D004625 ORTHO05D006054 2.9e-18 95.5 118 46.6
TWI75G0995 Tripterygium wilfordii HOM05D004625 ORTHO05D006054 8.5e-18 94.0 118 48.3
Gorai.002G214500 Gossypium raimondii HOM05D004625 ORTHO05D006054 5.5e-17 91.3 118 44.9
CANSAT25G0492 Cannabis sativa HOM05D004625 ORTHO05D006054 9.4e-17 90.5 118 46.6
Gohir.A01G181800 Gossypium hirsutum HOM05D004625 ORTHO05D006054 9.4e-17 90.5 118 44.1
Thecc.02G028700 Theobroma cacao HOM05D004625 ORTHO05D006054 9.4e-17 90.5 118 47.5
Manes.15G145800 Manihot esculenta HOM05D004625 ORTHO05D006054 1.6e-16 89.7 116 47.4
Duzib052G1066 Durio zibethinus HOM05D004625 ORTHO05D006054 2.1e-16 89.4 123 43.9
Potri.004G147800 Populus trichocarpa HOM05D004625 ORTHO05D006054 2.1e-16 89.4 124 46.0
Lj3g0006928 Lotus japonicus HOM05D004625 ORTHO05D006054 3.6e-16 88.6 123 46.3
Cfa004948 Carpinus fangiana HOM05D004625 ORTHO05D006054 4.7e-16 88.2 117 44.4
QL11p039255 Quercus lobata HOM05D004625 ORTHO05D006054 6.1e-16 87.8 122 43.4
Medtr4g068580 Medicago truncatula HOM05D004625 ORTHO05D006054 1.4e-15 86.7 116 45.7
RcHm_v2.0_Chr6g0260711 Rosa chinensis HOM05D004625 ORTHO05D006054 1.8e-15 86.3 54 81.5
arahy.Tifrunner.gnm1.ann1.5EIT1K Arachis hypogaea HOM05D004625 ORTHO05D006054 2.3e-15 85.9 119 48.7
CARHR106270 Cardamine hirsuta HOM05D004625 ORTHO05D006054 5.2e-15 84.7 118 41.5
Glyma.11G123500 Glycine max HOM05D004625 ORTHO05D006054 6.8e-15 84.3 113 46.9
Psat7g207400 Pisum sativum HOM05D004625 ORTHO05D006054 6.8e-15 84.3 113 46.9
CiPaw.05G058800 Carya illinoinensis HOM05D004625 ORTHO05D006054 8.8e-15 84.0 111 45.9
Lalb_Chr19g0138511 Lupinus albus HOM05D004625 ORTHO05D006054 8.8e-15 84.0 120 45.8
AL3G47770 Arabidopsis lyrata HOM05D004625 ORTHO05D006054 1.5e-14 83.2 124 41.1
TAR381G1538 Trochodendron aralioides HOM05D004625 ORTHO05D006054 1.5e-14 83.2 119 43.7
Phvul.011G050300 Phaseolus vulgaris HOM05D004625 ORTHO05D006054 4.4e-14 81.6 119 43.7
TPR.G10228 Trifolium pratense HOM05D004625 ORTHO05D006054 4.4e-14 81.6 116 45.7
Ca_20818_v3 Cicer arietinum L. HOM05D004625 ORTHO05D006054 9.8e-14 80.5 114 44.7
Atru.chr5.2894 Acer truncatum HOM05D004625 ORTHO05D006054 1.3e-13 80.1 116 43.1
Actinidia27924 Actinidia chinensis HOM05D004625 ORTHO05D006054 1.7e-13 79.7 115 45.2
Peaxi162Scf00016g01337 Petunia axillaris HOM05D004625 ORTHO05D006054 2.8e-13 79.0 126 40.5
Thhalv10022517m.g Eutrema salsugineum HOM05D004625 ORTHO05D006054 3.7e-13 78.6 95 47.4
Rhsim05G0078500 Rhododendron simsii HOM05D004625 ORTHO05D006054 1.1e-12 77.0 112 46.4
Sp3g29240 Schrenkiella parvula HOM05D004625 ORTHO05D006054 1.4e-12 76.6 95 45.3
Cc02_g18180 Coffea canephora HOM05D004625 ORTHO05D006054 9.1e-12 73.9 110 40.9
Sopen01g051280 Solanum pennellii HOM05D004625 ORTHO05D006054 1.6e-11 73.2 125 37.6
Aqoxy6G00945 Aquilegia oxysepala HOM05D004625 ORTHO05D006054 2.0e-11 72.8 102 43.1
PGR142G2954 Punica granatum HOM05D004625 ORTHO05D006054 2.0e-11 72.8 110 44.5
THA.LOC104807342 Tarenaya hassleriana HOM05D004625 ORTHO05D006054 2.0e-11 72.8 98 41.8
CsaV3_2G014290 Cucumis sativus L. HOM05D004625 ORTHO05D006054 2.7e-11 72.4 115 42.6
Hma1.2p1_1353F.1_g277680 Hydrangea macrophylla HOM05D004625 ORTHO05D006054 2.7e-11 72.4 117 43.6
Sabra04G0098100 Salix brachista HOM05D004625 ORTHO05D006054 2.7e-11 72.4 118 41.5
GSVIVG01031879001 Vitis vinifera HOM05D004625 ORTHO05D006054 2.7e-11 72.4 85 48.2
ClCG09G017690 Citrullus lanatus HOM05D004625 ORTHO05D006054 4.5e-11 71.6 91 47.3
Solyc01g109080.3 Solanum lycopersicum HOM05D004625 ORTHO05D006054 5.9e-11 71.2 122 37.7
Eucgr.I01219 Eucalyptus grandis HOM05D004625 ORTHO05D006054 7.7e-11 70.9 116 40.5
EL10Ac9g21791 Beta vulgaris HOM05D004625 ORTHO05D006054 1.0e-10 70.5 108 40.7
C07p07830 Brassica napus HOM05D004625 ORTHO05D006054 1.0e-10 70.5 38 78.9
BolC7t41201H Brassica oleracea HOM05D004625 ORTHO05D006054 1.0e-10 70.5 38 78.9
Ah.01g019860 Amaranthus hybridus HOM05D004625 ORTHO05D006054 1.3e-10 70.1 107 42.1
Sc14g0001720 Simmondsia chinensis HOM05D004625 ORTHO05D006054 1.7e-10 69.7 38 78.9
A07p04860 Brassica napus HOM05D004625 ORTHO05D006054 2.3e-10 69.3 38 76.3
BraA07t28278Z Brassica rapa HOM05D004625 ORTHO05D006054 2.3e-10 69.3 38 76.3
Sed0024635 Sechium edule HOM05D004625 ORTHO05D006054 2.3e-10 69.3 115 40.9
ECA240G0059 Erigeron canadensis HOM05D004625 ORTHO05D006054 2.9e-10 68.9 38 76.3
MBI16_g13376_MAGBIO Magnolia biondii HOM05D004625 ORTHO05D006054 6.6e-10 67.8 117 37.6
DCAR_003629 Daucus carota HOM05D004625 ORTHO05D006054 8.6e-10 67.4 74 48.6
PSO541G5018 Papaver somniferum HOM05D004625 ORTHO05D006054 8.6e-10 67.4 120 38.3
Zm00001eb056540 Zea mays HOM05D004625 ORTHO05D006054 1.5e-09 66.6 34 82.4
HanXRQChr03g0074341 Helianthus annuus HOM05D004625 ORTHO05D006054 1.9e-09 66.2 38 73.7
Nn5g29411 Nelumbo nucifera HOM05D004625 ORTHO05D006054 2.5e-09 65.9 110 40.9
Dinv42107 Davidia involucrata HOM05D004625 ORTHO05D006054 4.2e-09 65.1 118 39.8
Migut.B00290 Erythranthe guttata HOM05D004625 ORTHO05D006054 4.2e-09 65.1 114 39.5
RcHm_v2.0_Chr6g0260721 Rosa chinensis HOM05D004625 ORTHO05D006054 7.2e-09 64.3 38 76.3
Os03g0738200 Oryza sativa ssp. japonica HOM05D004625 ORTHO05D006054 9.5e-09 63.9 34 76.5
SEGI_40710 Sequoiadendron giganteum HOM05D004625 ORTHO05D006054 1.2e-08 63.5 35 71.4
AagrBONN_evm.TU.Sc2ySwM_362.351 Anthoceros agrestis HOM05D004625 ORTHO05D006054 8.0e-08 60.8 34 70.6
unitig_0.g75 Utricularia gibba HOM05D004625 ORTHO05D006054 1.4e-07 60.1 69 49.3
Mapoly0101s0045 Marchantia polymorpha HOM05D004625 ORTHO05D006054 5.2e-07 58.2 34 64.7
ATR0733G016 Amborella trichopoda HOM05D004625 ORTHO05D006054 1.2e-06 57.0 74 41.9
AUR62016661 Chenopodium quinoa HOM05D004625 ORTHO05D006054 7.5e-06 54.3 115 33.0


User provided reference genes

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