Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0259981 Rosa chinensis HOM05D004625 ORTHO05D006054 0.0e+00 1702.6 865 100.0
RcHm_v2.0_Chr6g0260791 Rosa chinensis HOM05D004625 ORTHO05D006054 0.0e+00 1417.5 832 89.5
FvH4_2g07370 Fragaria vesca HOM05D004625 ORTHO05D006054 0.0e+00 1358.6 832 86.1
FAN20G2900 Fragaria x ananassa HOM05D004625 ORTHO05D006054 0.0e+00 1353.6 832 85.7
FAN15G2126 Fragaria x ananassa HOM05D004625 ORTHO05D006054 0.0e+00 1349.0 832 85.3
FAN27G0869 Fragaria x ananassa HOM05D004625 ORTHO05D006054 0.0e+00 1342.4 832 84.7
MD10G1086500 Malus domestica HOM05D004625 ORTHO05D006054 0.0e+00 1252.7 832 79.6
Prupe.8G112500 Prunus persica HOM05D004625 ORTHO05D006054 0.0e+00 1240.3 832 80.2
FAN24G2498 Fragaria x ananassa HOM05D004625 ORTHO05D006054 0.0e+00 1236.5 832 80.2
Cfa004948 Carpinus fangiana HOM05D004625 ORTHO05D006054 0.0e+00 1120.5 834 71.3
Haze_02463 Corylus avellana HOM05D004625 ORTHO05D006054 0.0e+00 1114.0 832 70.9
QL11p039255 Quercus lobata HOM05D004625 ORTHO05D006054 0.0e+00 1085.5 835 69.5
CiPaw.05G058800 Carya illinoinensis HOM05D004625 ORTHO05D006054 0.0e+00 1076.2 834 69.2
Atru.chr5.2894 Acer truncatum HOM05D004625 ORTHO05D006054 1.2e-307 1059.7 834 68.6
Thecc.02G028700 Theobroma cacao HOM05D004625 ORTHO05D006054 7.9e-307 1057.0 834 68.5
Haze_02461 Corylus avellana HOM05D004625 ORTHO05D006054 1.9e-305 1052.4 798 70.1
Ciclev10027657m.g Citrus clementina HOM05D004625 ORTHO05D006054 2.5e-305 1052.0 834 68.1
CANSAT25G0492 Cannabis sativa HOM05D004625 ORTHO05D006054 4.3e-305 1051.2 834 67.5
Duzib052G1066 Durio zibethinus HOM05D004625 ORTHO05D006054 2.2e-301 1038.9 832 68.0
Gohir.D01G172900 Gossypium hirsutum HOM05D004625 ORTHO05D006054 2.2e-301 1038.9 834 67.5
Potri.004G147800 Populus trichocarpa HOM05D004625 ORTHO05D006054 1.1e-292 1010.0 834 66.1
Manes.15G145800 Manihot esculenta HOM05D004625 ORTHO05D006054 8.2e-288 993.8 836 65.1
Dinv42107 Davidia involucrata HOM05D004625 ORTHO05D006054 1.5e-286 989.6 834 64.4
TWI75G0995 Tripterygium wilfordii HOM05D004625 ORTHO05D006054 1.3e-285 986.5 834 63.8
Sabra04G0098100 Salix brachista HOM05D004625 ORTHO05D006054 1.7e-285 986.1 834 64.7
TAR381G0127 Trochodendron aralioides HOM05D004625 ORTHO05D006054 1.9e-284 982.6 824 64.4
Actinidia27924 Actinidia chinensis HOM05D004625 ORTHO05D006054 1.4e-282 976.5 834 62.9
ClCG09G017690 Citrullus lanatus HOM05D004625 ORTHO05D006054 4.4e-281 971.5 834 62.1
arahy.Tifrunner.gnm1.ann1.33V1D5 Arachis hypogaea HOM05D004625 ORTHO05D006054 1.3e-280 969.9 835 62.6
Lalb_Chr19g0138511 Lupinus albus HOM05D004625 ORTHO05D006054 2.2e-280 969.1 834 62.9
arahy.Tifrunner.gnm1.ann1.5EIT1K Arachis hypogaea HOM05D004625 ORTHO05D006054 2.4e-279 965.7 834 62.5
Lj5A204T93 Lonicera japonica HOM05D004625 ORTHO05D006054 9.1e-279 963.8 834 62.5
CsaV3_2G014290 Cucumis sativus L. HOM05D004625 ORTHO05D006054 1.0e-277 960.3 842 60.9
MELO3C021931.2 Cucumis melo HOM05D004625 ORTHO05D006054 2.2e-277 959.1 834 61.3
Gorai.002G214500 Gossypium raimondii HOM05D004625 ORTHO05D006054 8.5e-277 957.2 834 64.0
Hma1.2p1_1353F.1_g277680 Hydrangea macrophylla HOM05D004625 ORTHO05D006054 3.2e-276 955.3 834 62.7
Rhsim05G0078500 Rhododendron simsii HOM05D004625 ORTHO05D006054 2.1e-275 952.6 834 61.5
Gohir.A01G181800 Gossypium hirsutum HOM05D004625 ORTHO05D006054 7.2e-268 927.5 833 62.9
Sed0024635 Sechium edule HOM05D004625 ORTHO05D006054 6.1e-267 924.5 834 59.5
Nn5g29411 Nelumbo nucifera HOM05D004625 ORTHO05D006054 8.0e-267 924.1 826 60.9
Phvul.011G050300 Phaseolus vulgaris HOM05D004625 ORTHO05D006054 1.2e-265 920.2 835 61.0
Medtr4g068580 Medicago truncatula HOM05D004625 ORTHO05D006054 2.0e-265 919.5 834 60.1
Solyc01g109080.3 Solanum lycopersicum HOM05D004625 ORTHO05D006054 1.4e-263 913.3 837 60.0
Sopen01g051280 Solanum pennellii HOM05D004625 ORTHO05D006054 5.4e-263 911.4 837 60.0
Lj3g0006928 Lotus japonicus HOM05D004625 ORTHO05D006054 1.2e-262 910.2 834 59.6
Glyma.11G123500 Glycine max HOM05D004625 ORTHO05D006054 2.9e-261 905.6 836 59.8
PGR142G2954 Punica granatum HOM05D004625 ORTHO05D006054 5.0e-261 904.8 832 60.2
MBI16_g13376_MAGBIO Magnolia biondii HOM05D004625 ORTHO05D006054 2.8e-259 899.0 844 59.5
Ca_20826_v3 Cicer arietinum L. HOM05D004625 ORTHO05D006054 6.1e-259 897.9 834 59.2
Lsat_1_v5_gn_9_109140 Lactuca sativa HOM05D004625 ORTHO05D006054 1.4e-258 896.7 832 58.4
Cc02_g18180 Coffea canephora HOM05D004625 ORTHO05D006054 3.0e-258 895.6 831 59.9
Peaxi162Scf00016g01337 Petunia axillaris HOM05D004625 ORTHO05D006054 3.0e-258 895.6 834 58.6
DCAR_003628 Daucus carota HOM05D004625 ORTHO05D006054 8.9e-258 894.0 832 58.2
Psat7g207400 Pisum sativum HOM05D004625 ORTHO05D006054 3.9e-253 878.6 834 58.5
PSO541G5018 Papaver somniferum HOM05D004625 ORTHO05D006054 4.3e-252 875.2 836 59.0
ECA240G0059 Erigeron canadensis HOM05D004625 ORTHO05D006054 1.2e-249 867.1 832 56.6
SalBow6G1518 Salvia bowleyana HOM05D004625 ORTHO05D006054 4.4e-249 865.1 830 57.5
Migut.B00290 Erythranthe guttata HOM05D004625 ORTHO05D006054 3.7e-248 862.1 829 56.6
SGA_v2.0_scaffold58G20593 Striga asiatica HOM05D004625 ORTHO05D006054 4.9e-248 861.7 829 58.1
Sc14g0001720 Simmondsia chinensis HOM05D004625 ORTHO05D006054 3.6e-243 845.5 834 56.8
TPR.G10228 Trifolium pratense HOM05D004625 ORTHO05D006054 1.1e-242 844.0 808 58.7
AUR62016661 Chenopodium quinoa HOM05D004625 ORTHO05D006054 3.1e-242 842.4 837 56.3
HanXRQChr03g0074341 Helianthus annuus HOM05D004625 ORTHO05D006054 6.8e-242 841.3 835 55.7
THA.LOC104807342 Tarenaya hassleriana HOM05D004625 ORTHO05D006054 4.4e-241 838.6 828 55.4
AUR62011397 Chenopodium quinoa HOM05D004625 ORTHO05D006054 2.4e-239 832.8 837 55.9
Eucgr.I01219 Eucalyptus grandis HOM05D004625 ORTHO05D006054 3.2e-239 832.4 828 55.6
EL10Ac9g21791 Beta vulgaris HOM05D004625 ORTHO05D006054 7.1e-239 831.2 833 56.2
Nitab4.5_0004946g0030 Nicotiana tabacum HOM05D004625 ORTHO05D006054 3.0e-237 825.9 820 56.7
Aqoxy6G00945 Aquilegia oxysepala HOM05D004625 ORTHO05D006054 2.1e-235 819.7 830 55.2
AL3G47770 Arabidopsis lyrata HOM05D004625 ORTHO05D006054 3.7e-232 808.9 827 53.4
CARHR106270 Cardamine hirsuta HOM05D004625 ORTHO05D006054 1.4e-231 807.0 827 53.6
Cpa.g.sc62.82 Carica papaya HOM05D004625 ORTHO05D006054 1.3e-224 783.9 658 65.2
Sp3g29240 Schrenkiella parvula HOM05D004625 ORTHO05D006054 1.8e-218 763.5 829 51.5
BraA07t28278Z Brassica rapa HOM05D004625 ORTHO05D006054 3.4e-217 759.2 832 51.6
A07p04860 Brassica napus HOM05D004625 ORTHO05D006054 5.8e-217 758.4 832 51.7
Thhalv10022517m.g Eutrema salsugineum HOM05D004625 ORTHO05D006054 9.9e-217 757.7 833 51.1
C07p07830 Brassica napus HOM05D004625 ORTHO05D006054 2.1e-214 750.0 831 50.9
BolC7t41201H Brassica oleracea HOM05D004625 ORTHO05D006054 2.1e-214 750.0 831 50.9
vmacro19476 Vaccinium macrocarpon HOM05D004625 ORTHO05D006054 9.6e-204 714.5 699 56.4
BcaC06g36102 Brassica carinata HOM05D004625 ORTHO05D006054 3.1e-202 709.5 831 49.1
ATR0733G016 Amborella trichopoda HOM05D004625 ORTHO05D006054 1.3e-200 704.1 833 49.8
CAN.G322.88 Capsicum annuum HOM05D004625 ORTHO05D006054 2.9e-200 703.0 698 55.9
CDE02G3219 Ceratophyllum demersum HOM05D004625 ORTHO05D006054 1.2e-185 654.4 753 48.9
GSVIVG01031879001 Vitis vinifera HOM05D004625 ORTHO05D006054 1.2e-185 654.4 807 48.7
Ah.01g019860 Amaranthus hybridus HOM05D004625 ORTHO05D006054 5.1e-181 639.0 798 46.6
Aa31LG8G13460 Aethionema arabicum HOM05D004625 ORTHO05D006054 4.5e-177 625.9 696 50.3
Oeu035506.5 Olea europaea HOM05D004625 ORTHO05D006054 2.2e-171 607.1 829 45.7
HPP92_012734 Vanilla planifolia HOM05D004625 ORTHO05D006054 4.1e-170 602.8 850 43.8
SEGI_25812 Sequoiadendron giganteum HOM05D004625 ORTHO05D006054 3.2e-167 593.2 823 44.2
RcHm_v2.0_Chr6g0260191 Rosa chinensis HOM05D004625 ORTHO05D006054 4.8e-155 552.7 326 88.3
unitig_0.g76 Utricularia gibba HOM05D004625 ORTHO05D006054 3.6e-150 536.6 830 41.7
Zm00001eb056540 Zea mays HOM05D004625 ORTHO05D006054 2.3e-144 517.3 851 39.5
Mapoly0101s0045 Marchantia polymorpha HOM05D004625 ORTHO05D006054 2.1e-126 457.6 834 39.1
AagrBONN_evm.TU.Sc2ySwM_362.351 Anthoceros agrestis HOM05D004625 ORTHO05D006054 4.2e-106 390.2 852 34.3
RcHm_v2.0_Chr6g0260691 Rosa chinensis HOM05D004625 ORTHO05D006054 1.3e-102 378.6 197 98.0
Pp3c10_4250 Physcomitrium patens HOM05D004625 ORTHO05D006054 5.1e-96 356.7 856 33.3
HPP92_012817 Vanilla planifolia HOM05D004625 ORTHO05D006054 6.3e-62 243.4 446 37.2
arahy.Tifrunner.gnm1.ann1.1QVL6J Arachis hypogaea HOM05D004625 ORTHO05D006054 2.9e-59 234.6 148 77.7
Psat7g052720 Pisum sativum HOM05D004625 ORTHO05D006054 1.3e-46 192.6 292 43.5
RcHm_v2.0_Chr6g0260571 Rosa chinensis HOM05D004625 ORTHO05D006054 2.4e-45 188.3 215 53.0
SMO340G0206 Selaginella moellendorffii HOM05D004625 ORTHO05D006054 1.4e-40 172.6 532 28.0
Psat7g052560 Pisum sativum HOM05D004625 ORTHO05D006054 3.2e-34 151.4 225 45.8
COL.COLO4_17776 Corchorus olitorius HOM05D004625 ORTHO05D006054 1.3e-30 139.4 102 65.7
Cfa005272 Carpinus fangiana HOM05D004625 ORTHO05D006054 3.7e-22 111.3 92 66.3
arahy.Tifrunner.gnm1.ann1.CLIV5D Arachis hypogaea HOM05D004625 ORTHO05D006054 1.2e-20 106.3 148 44.6
Lsat_1_v5_gn_1_115820 Lactuca sativa HOM05D005112 ORTHO05D036434 7.8e-20 103.6 64 76.6
Psat3g017120 Pisum sativum HOM05D000030 ORTHO05D000009 6.6e-19 100.5 86 66.3
Aa31LG8G13450 Aethionema arabicum HOM05D004625 ORTHO05D023368 5.6e-18 97.4 66 68.2
Cpa.g.c40075 Carica papaya HOM05D004625 ORTHO05D006054 2.3e-16 92.0 52 82.7
Lsat_1_v5_gn_2_30340 Lactuca sativa HOM05D005112 ORTHO05D006681 4.0e-16 91.3 62 67.7
RcHm_v2.0_Chr6g0260221 Rosa chinensis HOM05D004625 ORTHO05D006054 4.0e-08 64.7 43 79.1
RcHm_v2.0_Chr6g0260701 Rosa chinensis HOM05D004625 ORTHO05D006054 2.0e-07 62.4 35 88.6
Aa31LG8G13470 Aethionema arabicum HOM05D004625 ORTHO05D006054 2.9e-06 58.5 41 70.7


User provided reference genes

Program Settings