Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0255941 Rosa chinensis HOM05D002292 ORTHO05D003256 8.4e-28 126.7 61 100.0
FvH4_6g26640 Fragaria vesca HOM05D002292 ORTHO05D003256 2.1e-18 95.5 68 73.5
FAN05G4358 Fragaria x ananassa HOM05D002292 ORTHO05D003256 2.1e-18 95.5 68 73.5
FAN09G0797 Fragaria x ananassa HOM05D002292 ORTHO05D003256 2.1e-18 95.5 68 73.5
FAN14G5439 Fragaria x ananassa HOM05D002292 ORTHO05D003256 2.1e-18 95.5 68 73.5
RcHm_v2.0_Chr2g0127201 Rosa chinensis HOM05D002292 ORTHO05D003256 2.7e-18 95.1 66 74.2
FAN02G3233 Fragaria x ananassa HOM05D002292 ORTHO05D003256 1.0e-17 93.2 68 72.1
ATR0691G112 Amborella trichopoda HOM05D002292 ORTHO05D003256 5.7e-16 87.4 66 66.7
Phvul.L001621 Phaseolus vulgaris HOM05D002292 ORTHO05D003256 5.7e-16 87.4 66 66.7
VMungo1127G1900 Vigna mungo HOM05D002292 ORTHO05D003256 5.7e-16 87.4 66 66.7
Atru.chr6.2873 Acer truncatum HOM05D002292 ORTHO05D003256 7.4e-16 87.0 67 65.7
Cc05_g07700 Coffea canephora HOM05D002292 ORTHO05D003256 1.3e-15 86.3 66 65.2
Cfa023332 Carpinus fangiana HOM05D002292 ORTHO05D003256 2.2e-15 85.5 66 65.2
Glyma.06G289400 Glycine max HOM05D002292 ORTHO05D003256 2.2e-15 85.5 66 65.2
Glyma.12G117600 Glycine max HOM05D002292 ORTHO05D003256 2.2e-15 85.5 66 65.2
Psat7g137480 Pisum sativum HOM05D002292 ORTHO05D003256 2.2e-15 85.5 66 65.2
Prupe.3G134800 Prunus persica HOM05D002292 ORTHO05D003256 2.2e-15 85.5 66 65.2
PGR142G0833 Punica granatum HOM05D002292 ORTHO05D003256 2.2e-15 85.5 66 65.2
THA.LOC104804050 Tarenaya hassleriana HOM05D002292 ORTHO05D003256 2.2e-15 85.5 71 59.2
TPR.G9354 Trifolium pratense HOM05D002292 ORTHO05D003256 2.2e-15 85.5 66 65.2
CAN.G209.5 Capsicum annuum HOM05D002292 ORTHO05D003256 3.7e-15 84.7 66 65.2
Actinidia11105 Actinidia chinensis HOM05D002292 ORTHO05D003256 4.8e-15 84.3 65 64.6
Dinv01517 Davidia involucrata HOM05D002292 ORTHO05D003256 4.8e-15 84.3 66 63.6
Dinv10166 Davidia involucrata HOM05D002292 ORTHO05D003256 4.8e-15 84.3 66 63.6
Lj3g0005030 Lotus japonicus HOM05D002292 ORTHO05D003256 4.8e-15 84.3 66 63.6
TWI14G1271 Tripterygium wilfordii HOM05D002292 ORTHO05D003256 4.8e-15 84.3 66 63.6
TWI23G0418 Tripterygium wilfordii HOM05D002292 ORTHO05D003256 4.8e-15 84.3 66 63.6
Ca_18922_v3 Cicer arietinum L. HOM05D002292 ORTHO05D003256 6.3e-15 84.0 66 63.6
Duzib248G0284 Durio zibethinus HOM05D002292 ORTHO05D003256 6.3e-15 84.0 66 63.6
MD09G1242100 Malus domestica HOM05D002292 ORTHO05D003256 6.3e-15 84.0 66 63.6
Medtr4g078780 Medicago truncatula HOM05D002292 ORTHO05D003256 6.3e-15 84.0 66 63.6
Aa31LG8G13530 Aethionema arabicum HOM05D002292 ORTHO05D003256 8.2e-15 83.6 71 57.7
Lalb_Chr01g0005091 Lupinus albus HOM05D002292 ORTHO05D003256 8.2e-15 83.6 66 63.6
BcaB03g16854 Brassica carinata HOM05D002292 ORTHO05D003256 1.1e-14 83.2 71 57.7
CsaV3_7G003090 Cucumis sativus L. HOM05D002292 ORTHO05D003256 1.1e-14 83.2 66 62.1
Nn1g00672 Nelumbo nucifera HOM05D002292 ORTHO05D003256 1.1e-14 83.2 66 63.6
Sp3g33820 Schrenkiella parvula HOM05D002292 ORTHO05D003256 1.1e-14 83.2 71 57.7
MSTRG.15130 Avicennia marina HOM05D002292 ORTHO05D003256 1.4e-14 82.8 66 63.6
BraA07t27810Z Brassica rapa HOM05D002292 ORTHO05D003256 1.4e-14 82.8 57 66.7
MELO3C018868.2 Cucumis melo HOM05D002292 ORTHO05D003256 1.4e-14 82.8 66 62.1
Lalb_Chr03g0029631 Lupinus albus HOM05D002292 ORTHO05D003256 1.4e-14 82.8 66 63.6
Sed0000760 Sechium edule HOM05D002292 ORTHO05D003256 1.4e-14 82.8 66 62.1
GSVIVG01020602001 Vitis vinifera HOM05D002292 ORTHO05D003256 1.4e-14 82.8 66 63.6
Carub.0003s3506 Capsella rubella HOM05D002292 ORTHO05D003256 1.8e-14 82.4 71 57.7
CiPaw.03G181100 Carya illinoinensis HOM05D002292 ORTHO05D003256 1.8e-14 82.4 66 63.6
Lalb_Chr19g0135111 Lupinus albus HOM05D002292 ORTHO05D003256 1.8e-14 82.4 66 63.6
BcaC06g36750 Brassica carinata HOM05D002292 ORTHO05D003256 2.4e-14 82.0 71 56.3
C07p00430 Brassica napus HOM05D002292 ORTHO05D003256 2.4e-14 82.0 71 56.3
BolC7t40489H Brassica oleracea HOM05D002292 ORTHO05D003256 2.4e-14 82.0 71 56.3
Cpa.g.c26338 Carica papaya HOM05D002292 ORTHO05D003256 2.4e-14 82.0 66 62.1
AUR62036052 Chenopodium quinoa HOM05D002292 ORTHO05D003256 3.1e-14 81.6 66 59.1
AUR62038984 Chenopodium quinoa HOM05D002292 ORTHO05D003256 3.1e-14 81.6 66 59.1
Ciclev10014210m.g Citrus clementina HOM05D002292 ORTHO05D003256 3.1e-14 81.6 66 62.1
Thecc.02G185600 Theobroma cacao HOM05D002292 ORTHO05D003256 3.1e-14 81.6 66 62.1
AL3G53630 Arabidopsis lyrata HOM05D002292 ORTHO05D003256 4.1e-14 81.3 71 57.7
CARHR111150 Cardamine hirsuta HOM05D002292 ORTHO05D003256 4.1e-14 81.3 71 56.3
Eucgr.K01053 Eucalyptus grandis HOM05D002292 ORTHO05D003256 4.1e-14 81.3 66 62.1
Lj8C108T4 Lonicera japonica HOM05D002292 ORTHO05D003256 4.1e-14 81.3 66 60.6
Sed0014471 Sechium edule HOM05D002292 ORTHO05D003256 4.1e-14 81.3 66 60.6
AT2G20580 Arabidopsis thaliana HOM05D002292 ORTHO05D003256 5.3e-14 80.9 71 56.3
A07p00160 Brassica napus HOM05D002292 ORTHO05D003256 5.3e-14 80.9 71 56.3
CSS0001743 Camellia sinensis var. sinensis HOM05D002292 ORTHO05D003256 6.9e-14 80.5 66 63.6
CiPaw.04G128800 Carya illinoinensis HOM05D002292 ORTHO05D003256 6.9e-14 80.5 66 60.6
Migut.M00151 Erythranthe guttata HOM05D002292 ORTHO05D003256 6.9e-14 80.5 66 62.1
CANSAT64G2461 Cannabis sativa HOM05D002292 ORTHO05D003256 9.0e-14 80.1 66 62.1
TPR.G5998 Trifolium pratense HOM05D002292 ORTHO05D003256 9.0e-14 80.1 69 58.0
Aa31LG2G21960 Aethionema arabicum HOM05D002292 ORTHO05D003256 1.2e-13 79.7 71 56.3
COL.COLO4_18044 Corchorus olitorius HOM05D002292 ORTHO05D003256 1.2e-13 79.7 66 60.6
Gohir.A01G019500 Gossypium hirsutum HOM05D002292 ORTHO05D003256 1.2e-13 79.7 66 60.6
Gohir.D01G018000 Gossypium hirsutum HOM05D002292 ORTHO05D003256 1.2e-13 79.7 66 60.6
Gorai.002G020200 Gossypium raimondii HOM05D002292 ORTHO05D003256 1.2e-13 79.7 66 60.6
MD17G1234500 Malus domestica HOM05D002292 ORTHO05D003256 1.2e-13 79.7 66 59.1
Os02g0146700 Oryza sativa ssp. japonica HOM05D002292 ORTHO05D003256 1.2e-13 79.7 66 60.6
Potri.007G137200 Populus trichocarpa HOM05D002292 ORTHO05D003256 1.2e-13 79.7 66 62.1
Sc21g0003680 Simmondsia chinensis HOM05D002292 ORTHO05D003256 1.2e-13 79.7 66 62.1
TAR369G0508 Trochodendron aralioides HOM05D002292 ORTHO05D003256 1.2e-13 79.7 67 59.7
TAR369G0796 Trochodendron aralioides HOM05D002292 ORTHO05D003256 1.2e-13 79.7 67 59.7
Duzib052G0792 Durio zibethinus HOM05D002292 ORTHO05D003256 2.0e-13 79.0 66 59.1
Thhalv10001903m.g Eutrema salsugineum HOM05D002292 ORTHO05D003256 2.0e-13 79.0 71 54.9
QL08p040017 Quercus lobata HOM05D002292 ORTHO05D003256 2.0e-13 79.0 66 60.6
QL08p040049 Quercus lobata HOM05D002292 ORTHO05D003256 2.0e-13 79.0 66 62.1
Solyc07g053650.4 Solanum lycopersicum HOM05D002292 ORTHO05D003256 2.0e-13 79.0 66 60.6
Sopen07g027620 Solanum pennellii HOM05D002292 ORTHO05D003256 2.0e-13 79.0 66 60.6
PGSC0003DMG402009395 Solanum tuberosum HOM05D002292 ORTHO05D003256 2.0e-13 79.0 66 60.6
Aqoxy3G02563 Aquilegia oxysepala HOM05D002292 ORTHO05D003256 2.6e-13 78.6 66 62.1
arahy.Tifrunner.gnm1.ann1.ULM3VA Arachis hypogaea HOM05D002292 ORTHO05D003256 2.6e-13 78.6 84 51.2
arahy.Tifrunner.gnm1.ann1.WEN01S Arachis hypogaea HOM05D002292 ORTHO05D003256 2.6e-13 78.6 84 51.2
EL10Ac9g20812 Beta vulgaris HOM05D002292 ORTHO05D003256 3.4e-13 78.2 66 59.1
SEGI_41616 Sequoiadendron giganteum HOM05D002292 ORTHO05D003256 3.4e-13 78.2 66 60.6
Manes.12G089500 Manihot esculenta HOM05D002292 ORTHO05D003256 4.5e-13 77.8 66 59.1
Zm00001eb208050 Zea mays HOM05D002292 ORTHO05D003256 4.5e-13 77.8 66 59.1
CARHR236240 Cardamine hirsuta HOM05D002292 ORTHO05D003256 5.9e-13 77.4 71 53.5
Rhsim06G0137300 Rhododendron simsii HOM05D002292 ORTHO05D003256 5.9e-13 77.4 66 59.1
SGA_v2.0_scaffold34G13924 Striga asiatica HOM05D002292 ORTHO05D003256 5.9e-13 77.4 66 60.6
THA.LOC104824690 Tarenaya hassleriana HOM05D002292 ORTHO05D003256 5.9e-13 77.4 66 57.6
Sabra17G0012000 Salix brachista HOM05D002292 ORTHO05D003256 7.7e-13 77.0 70 55.7
Potri.017G014800 Populus trichocarpa HOM05D002292 ORTHO05D003256 1.0e-12 76.6 66 59.1
Nn6g33691 Nelumbo nucifera HOM05D002292 ORTHO05D003256 1.3e-12 76.3 67 56.7
ECA246G1445 Erigeron canadensis HOM05D002292 ORTHO05D003256 1.7e-12 75.9 66 54.5
FAN22G0932 Fragaria x ananassa HOM05D002292 ORTHO05D003256 1.7e-12 75.9 77 55.8
Hund01060 Selenicereus undatus HOM05D002292 ORTHO05D003256 1.7e-12 75.9 66 57.6
Carub.0007s1223 Capsella rubella HOM05D002292 ORTHO05D003256 2.2e-12 75.5 71 52.1
Thhalv10024363m.g Eutrema salsugineum HOM05D002292 ORTHO05D003256 2.2e-12 75.5 71 53.5
Lsat_1_v5_gn_6_65161 Lactuca sativa HOM05D002292 ORTHO05D003256 2.2e-12 75.5 66 56.1
Oeu036078.1 Olea europaea HOM05D002292 ORTHO05D003256 2.2e-12 75.5 63 61.9
BcaNung01564 Brassica carinata HOM05D002292 ORTHO05D003256 2.9e-12 75.1 71 54.9
ECA232G1044 Erigeron canadensis HOM05D002292 ORTHO05D003256 2.9e-12 75.1 66 56.1
HanXRQChr17g0541921 Helianthus annuus HOM05D002292 ORTHO05D003256 2.9e-12 75.1 66 56.1
Sabra07G0110300 Salix brachista HOM05D002292 ORTHO05D003256 3.8e-12 74.7 77 51.9
BcaC06g32618 Brassica carinata HOM05D002292 ORTHO05D003256 5.0e-12 74.3 71 52.1
PSO210G1937 Papaver somniferum HOM05D002292 ORTHO05D003256 5.0e-12 74.3 67 55.2
PSO339G0848 Papaver somniferum HOM05D002292 ORTHO05D003256 5.0e-12 74.3 67 56.7
PSO384G0954 Papaver somniferum HOM05D002292 ORTHO05D003256 5.0e-12 74.3 67 56.7
Psat4g001960 Pisum sativum HOM05D002292 ORTHO05D003256 5.0e-12 74.3 69 55.1
Actinidia39328 Actinidia chinensis HOM05D002292 ORTHO05D003256 6.5e-12 73.9 66 57.6
BcaC09g51648 Brassica carinata HOM05D002292 ORTHO05D003256 6.5e-12 73.9 71 53.5
A03p58120 Brassica napus HOM05D002292 ORTHO05D003256 6.5e-12 73.9 71 52.1
C01p11030 Brassica napus HOM05D002292 ORTHO05D003256 6.5e-12 73.9 71 53.5
C07p56240 Brassica napus HOM05D002292 ORTHO05D003256 6.5e-12 73.9 71 52.1
BolC7t46102H Brassica oleracea HOM05D002292 ORTHO05D003256 6.5e-12 73.9 71 52.1
BraA03t14878Z Brassica rapa HOM05D002292 ORTHO05D003256 6.5e-12 73.9 71 52.1
QL10p029699 Quercus lobata HOM05D002292 ORTHO05D008330 6.5e-12 73.9 66 59.1
A01p09480 Brassica napus HOM05D002292 ORTHO05D003256 8.5e-12 73.6 71 53.5
BolC1t01065H Brassica oleracea HOM05D002292 ORTHO05D003256 8.5e-12 73.6 71 53.5
BraA01t00890Z Brassica rapa HOM05D002292 ORTHO05D003256 8.5e-12 73.6 71 53.5
PSO210G2625 Papaver somniferum HOM05D002292 ORTHO05D003256 8.5e-12 73.6 67 55.2
HPP92_006722 Vanilla planifolia HOM05D002292 ORTHO05D003256 1.1e-11 73.2 66 57.6
Gorai.004G198500 Gossypium raimondii HOM05D002292 ORTHO05D003256 1.4e-11 72.8 66 56.1
HanXRQChr11g0326301 Helianthus annuus HOM05D002292 ORTHO05D003256 1.4e-11 72.8 66 54.5
Manes.13G142400 Manihot esculenta HOM05D002292 ORTHO05D003256 1.9e-11 72.4 74 51.4
PSO349G0008 Papaver somniferum HOM05D002292 ORTHO05D003256 1.9e-11 72.4 73 50.7
AT4G28470 Arabidopsis thaliana HOM05D002292 ORTHO05D003256 2.5e-11 72.0 71 50.7
CSS0036482 Camellia sinensis var. sinensis HOM05D002292 ORTHO05D003256 3.2e-11 71.6 63 60.3
FAN12G0742 Fragaria x ananassa HOM05D002292 ORTHO05D003256 3.2e-11 71.6 77 53.2
Actinidia30456 Actinidia chinensis HOM05D002292 ORTHO05D003256 4.2e-11 71.2 60 58.3
Os06g0699900 Oryza sativa ssp. japonica HOM05D002292 ORTHO05D003256 4.2e-11 71.2 66 53.0
FvH4_4g14560 Fragaria vesca HOM05D002292 ORTHO05D003256 5.5e-11 70.9 77 53.2
Oeu016909.1 Olea europaea HOM05D002292 ORTHO05D003256 5.5e-11 70.9 66 56.1
AagrBONN_evm.TU.Sc2ySwM_228.5526 Anthoceros agrestis HOM05D002292 ORTHO05D003256 7.2e-11 70.5 66 51.5
Sp7g26440 Schrenkiella parvula HOM05D002292 ORTHO05D003256 7.2e-11 70.5 71 52.1
Aqoxy4G01267 Aquilegia oxysepala HOM05D002292 ORTHO05D003256 9.4e-11 70.1 67 55.2
AL7G24090 Arabidopsis lyrata HOM05D002292 ORTHO05D003256 9.4e-11 70.1 71 49.3
BraA08t33964Z Brassica rapa HOM05D002292 ORTHO05D003256 9.4e-11 70.1 71 52.1
Os09g0326800 Oryza sativa ssp. japonica HOM05D002292 ORTHO05D003256 9.4e-11 70.1 66 53.0
CSS0019547 Camellia sinensis var. sinensis HOM05D002292 ORTHO05D003256 1.2e-10 69.7 63 58.7
BcaC07g38333 Brassica carinata HOM05D002292 ORTHO05D003256 1.6e-10 69.3 71 52.1
A08p20050 Brassica napus HOM05D002292 ORTHO05D003256 1.6e-10 69.3 71 52.1
C08p10870 Brassica napus HOM05D002292 ORTHO05D003256 1.6e-10 69.3 71 52.1
Gohir.D08G188500 Gossypium hirsutum HOM05D002292 ORTHO05D003256 1.6e-10 69.3 66 54.5
RcHm_v2.0_Chr4g0418261 Rosa chinensis HOM05D002292 ORTHO05D003256 1.6e-10 69.3 77 51.9
FvH4_2g12230 Fragaria vesca HOM05D002292 ORTHO05D003256 2.1e-10 68.9 53 69.8
TPR.G37007 Trifolium pratense HOM05D002292 ORTHO05D003256 2.7e-10 68.6 74 51.4
TPR.G37079 Trifolium pratense HOM05D002292 ORTHO05D003256 2.7e-10 68.6 74 51.4
Pp3c18_12670 Physcomitrium patens HOM05D002292 ORTHO05D003256 4.6e-10 67.8 66 51.5
Pp3c19_20260 Physcomitrium patens HOM05D002292 ORTHO05D003256 6.1e-10 67.4 66 50.0
Zm00001eb232220 Zea mays HOM05D002292 ORTHO05D003256 7.9e-10 67.0 64 53.1
BcaB03g12574 Brassica carinata HOM05D002292 ORTHO05D003256 1.0e-09 66.6 71 50.7
Sopen10g004040 Solanum pennellii HOM05D002292 ORTHO05D003256 1.0e-09 66.6 67 52.2
CAN.G782.27 Capsicum annuum HOM05D002292 ORTHO05D003256 1.4e-09 66.2 58 56.9
PSO013G0195 Papaver somniferum HOM05D002292 ORTHO05D003256 1.4e-09 66.2 75 45.3
Mapoly0136s0010 Marchantia polymorpha HOM05D002292 ORTHO05D003256 1.8e-09 65.9 66 51.5
BolC8t48762H Brassica oleracea HOM05D002292 ORTHO05D003256 2.3e-09 65.5 71 49.3
SMO147G0251 Selaginella moellendorffii HOM05D002292 ORTHO05D003256 3.0e-09 65.1 66 50.0
Gohir.A08G170200 Gossypium hirsutum HOM05D002292 ORTHO05D003256 6.7e-09 63.9 51 60.8
TAR636G1561 Trochodendron aralioides HOM05D002292 ORTHO05D003256 1.1e-08 63.2 72 45.8
CBR_g30307 Chara braunii HOM05D002292 ORTHO05D003256 5.7e-08 60.8 66 48.5
Dinv06862 Davidia involucrata HOM05D002292 ORTHO05D003256 5.7e-08 60.8 78 46.2
SGA_v2.0_scaffold70G23495 Striga asiatica HOM05D002292 ORTHO05D003256 2.8e-07 58.5 55 50.9
PGSC0003DMG400021858 Solanum tuberosum HOM05D002292 ORTHO05D012147 1.8e-06 55.8 31 74.2
HPP92_006718 Vanilla planifolia HOM05D002292 ORTHO05D003256 2.4e-06 55.5 30 80.0


User provided reference genes

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