Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0084131 Rosa chinensis HOM05D004147 ORTHO05D005606 1.0e-149 533.5 286 100.0
FAN21G1018 Fragaria x ananassa HOM05D004147 ORTHO05D005606 2.8e-144 515.4 292 94.9
FvH4_3g46070 Fragaria vesca HOM05D004147 ORTHO05D005606 5.9e-142 507.7 298 93.0
MD03G1000100 Malus domestica HOM05D004147 ORTHO05D005606 2.2e-141 505.8 298 93.0
MD11G1000500 Malus domestica HOM05D004147 ORTHO05D005606 1.9e-140 502.7 301 92.7
Prupe.6G000600 Prunus persica HOM05D004147 ORTHO05D005606 1.2e-139 500.0 307 90.9
QL01p007763 Quercus lobata HOM05D004147 ORTHO05D005606 1.4e-138 496.5 305 88.9
FAN11G3393 Fragaria x ananassa HOM05D004147 ORTHO05D005606 2.3e-138 495.7 324 85.2
CANSAT35G0441 Cannabis sativa HOM05D004147 ORTHO05D005606 3.0e-138 495.4 273 91.6
FAN16G1044 Fragaria x ananassa HOM05D004147 ORTHO05D005606 8.8e-138 493.8 329 83.9
Potri.003G224000 Populus trichocarpa HOM05D004147 ORTHO05D005606 2.0e-137 492.7 303 89.8
Glyma.07G225200 Glycine max HOM05D004147 ORTHO05D005606 3.4e-137 491.9 297 86.5
Thecc.09G206400 Theobroma cacao HOM05D004147 ORTHO05D005606 3.4e-137 491.9 273 91.6
Duzib150G1508 Durio zibethinus HOM05D004147 ORTHO05D005606 7.5e-137 490.7 298 91.6
Ca_18795_v3 Cicer arietinum L. HOM05D004147 ORTHO05D005606 2.2e-136 489.2 297 89.9
COL.COLO4_35060 Corchorus olitorius HOM05D004147 ORTHO05D005606 2.2e-136 489.2 273 91.2
CiPaw.13G180000 Carya illinoinensis HOM05D004147 ORTHO05D005606 3.7e-136 488.4 297 85.9
Gohir.D05G000800 Gossypium hirsutum HOM05D004147 ORTHO05D005606 6.3e-136 487.6 297 85.9
VMungo0251G0902 Vigna mungo HOM05D004147 ORTHO05D005606 6.3e-136 487.6 297 87.2
PGR102G2115 Punica granatum HOM05D004147 ORTHO05D005606 8.3e-136 487.3 297 83.2
ClCG03G014680 Citrullus lanatus HOM05D004147 ORTHO05D005606 1.4e-135 486.5 293 88.4
Gohir.A05G000500 Gossypium hirsutum HOM05D004147 ORTHO05D005606 1.4e-135 486.5 297 85.9
Phvul.002G101600 Phaseolus vulgaris HOM05D004147 ORTHO05D005606 1.4e-135 486.5 297 86.9
Dinv06248 Davidia involucrata HOM05D004147 ORTHO05D005606 2.4e-135 485.7 297 84.5
Dinv15522 Davidia involucrata HOM05D004147 ORTHO05D005606 2.4e-135 485.7 297 84.5
Glyma.20G025100 Glycine max HOM05D004147 ORTHO05D005606 2.4e-135 485.7 297 87.2
Cc01_g00350 Coffea canephora HOM05D004147 ORTHO05D005606 5.4e-135 484.6 286 86.4
Atru.chr3.2044 Acer truncatum HOM05D004147 ORTHO05D005606 7.0e-135 484.2 302 88.7
TPR.G34051 Trifolium pratense HOM05D004147 ORTHO05D005606 7.0e-135 484.2 297 86.5
Lj4g0017588 Lotus japonicus HOM05D004147 ORTHO05D005606 2.0e-134 482.6 298 88.3
Gohir.D03G147100 Gossypium hirsutum HOM05D004147 ORTHO05D005606 4.5e-134 481.5 297 87.5
Haze_22914 Corylus avellana HOM05D004147 ORTHO05D005606 7.7e-134 480.7 286 87.1
Ciclev10016090m.g Citrus clementina HOM05D004147 ORTHO05D005606 1.3e-133 479.9 273 89.0
Cpa.g.sc119.7 Carica papaya HOM05D004147 ORTHO05D005606 1.7e-133 479.6 273 89.0
Gohir.A03G021600 Gossypium hirsutum HOM05D004147 ORTHO05D005606 3.8e-133 478.4 298 86.9
CsaV3_1G041490 Cucumis sativus L. HOM05D004147 ORTHO05D005606 1.1e-132 476.9 304 85.2
MELO3C015560.2 Cucumis melo HOM05D004147 ORTHO05D005606 2.5e-132 475.7 304 84.9
Medtr4g083230 Medicago truncatula HOM05D004147 ORTHO05D005606 5.5e-132 474.6 297 87.9
Potri.001G000700 Populus trichocarpa HOM05D004147 ORTHO05D005606 5.5e-132 474.6 300 87.0
Nn2g15911 Nelumbo nucifera HOM05D004147 ORTHO05D005606 1.2e-131 473.4 297 81.8
Duzib170G0806 Durio zibethinus HOM05D004147 ORTHO05D005606 3.6e-131 471.9 272 89.7
Gorai.003G154600 Gossypium raimondii HOM05D004147 ORTHO05D005606 1.4e-130 469.9 299 87.3
TAR623G0988 Trochodendron aralioides HOM05D004147 ORTHO05D005606 1.4e-130 469.9 297 81.8
Dinv09765 Davidia involucrata HOM05D004147 ORTHO05D005606 3.0e-130 468.8 297 85.5
TAR633G2501 Trochodendron aralioides HOM05D004147 ORTHO05D005606 4.0e-130 468.4 297 80.8
CSS0011494 Camellia sinensis var. sinensis HOM05D004147 ORTHO05D005606 8.8e-130 467.2 274 86.9
Oeu023957.1 Olea europaea HOM05D004147 ORTHO05D005606 1.5e-129 466.5 297 82.5
Hund19733 Selenicereus undatus HOM05D004147 ORTHO05D005606 2.0e-129 466.1 274 85.0
arahy.Tifrunner.gnm1.ann1.41N8FB Arachis hypogaea HOM05D004147 ORTHO05D005606 4.4e-129 464.9 273 86.8
arahy.Tifrunner.gnm1.ann1.JJ8YPF Arachis hypogaea HOM05D004147 ORTHO05D005606 4.4e-129 464.9 273 86.8
Lalb_Chr09g0328961 Lupinus albus HOM05D004147 ORTHO05D005606 4.4e-129 464.9 298 86.2
TWI60G0666 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 4.4e-129 464.9 297 80.8
Lalb_Chr16g0385471 Lupinus albus HOM05D004147 ORTHO05D005606 5.7e-129 464.5 297 85.5
Eucgr.J01722 Eucalyptus grandis HOM05D004147 ORTHO05D005606 9.8e-129 463.8 299 85.3
Sc09g0002150 Simmondsia chinensis HOM05D004147 ORTHO05D005606 4.9e-128 461.5 298 79.5
Sopen01g025520 Solanum pennellii HOM05D004147 ORTHO05D005606 4.9e-128 461.5 273 84.6
TWI34G0273 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 4.9e-128 461.5 297 80.8
SGA_v2.0_scaffold3G01703 Striga asiatica HOM05D004147 ORTHO05D005606 1.1e-127 460.3 286 85.3
Migut.N00528 Erythranthe guttata HOM05D004147 ORTHO05D005606 1.4e-127 459.9 297 82.5
CAN.G1941.2 Capsicum annuum HOM05D004147 ORTHO05D005606 5.4e-127 458.0 297 78.8
AUR62040894 Chenopodium quinoa HOM05D004147 ORTHO05D005606 1.6e-126 456.4 274 82.8
MSTRG.5958 Avicennia marina HOM05D004147 ORTHO05D005606 4.5e-126 454.9 296 79.4
MBI19_g24069_MAGBIO Magnolia biondii HOM05D004147 ORTHO05D005606 7.7e-126 454.1 267 85.4
TWI32G0854 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 2.9e-125 452.2 297 82.2
DCAR_001959 Daucus carota HOM05D004147 ORTHO05D005606 6.6e-125 451.1 297 79.8
vmacro04279 Vaccinium macrocarpon HOM05D004147 ORTHO05D005606 6.6e-125 451.1 312 77.6
MSTRG.19397 Avicennia marina HOM05D004147 ORTHO05D005606 8.6e-125 450.7 297 78.5
Aqoxy2G00002 Aquilegia oxysepala HOM05D004147 ORTHO05D005606 1.9e-124 449.5 289 78.5
CARHR125880 Cardamine hirsuta HOM05D004147 ORTHO05D005606 1.9e-124 449.5 297 77.8
Rhsim13G0235300 Rhododendron simsii HOM05D004147 ORTHO05D005606 2.5e-124 449.1 340 70.0
Thhalv10017021m.g Eutrema salsugineum HOM05D004147 ORTHO05D005606 2.8e-123 445.7 297 81.8
PSO339G2679 Papaver somniferum HOM05D004147 ORTHO05D005606 4.7e-123 444.9 295 76.6
PSO384G4999 Papaver somniferum HOM05D004147 ORTHO05D005606 8.0e-123 444.1 295 76.3
Sp4g14490 Schrenkiella parvula HOM05D004147 ORTHO05D005606 1.4e-122 443.4 297 80.1
Sed0000702 Sechium edule HOM05D004147 ORTHO05D005606 1.4e-122 443.4 273 79.5
EL10Ac4g10393 Beta vulgaris HOM05D004147 ORTHO05D005606 6.8e-122 441.0 299 76.9
PSO675G6472 Papaver somniferum HOM05D004147 ORTHO05D005606 6.8e-122 441.0 277 80.9
PSO541G5718 Papaver somniferum HOM05D004147 ORTHO05D005606 2.6e-121 439.1 277 80.5
ECA238G2098 Erigeron canadensis HOM05D004147 ORTHO05D005606 5.7e-121 438.0 282 80.1
Sabra01G0000600 Salix brachista HOM05D004147 ORTHO05D005606 7.5e-121 437.6 337 75.1
GSVIVG01025513001 Vitis vinifera HOM05D004147 ORTHO05D005606 9.8e-121 437.2 297 78.8
ATR0068G003 Amborella trichopoda HOM05D004147 ORTHO05D005606 1.3e-120 436.8 271 79.3
BraA05t20280Z Brassica rapa HOM05D004147 ORTHO05D005606 2.9e-120 435.6 298 79.2
C04p17540 Brassica napus HOM05D004147 ORTHO05D005606 3.7e-120 435.3 298 79.2
BolC4t23301H Brassica oleracea HOM05D004147 ORTHO05D005606 3.7e-120 435.3 298 79.2
Carub.0004s1343 Capsella rubella HOM05D004147 ORTHO05D005606 3.7e-120 435.3 273 80.2
Peaxi162Scf01181g00019 Petunia axillaris HOM05D004147 ORTHO05D005606 3.7e-120 435.3 334 71.9
HanXRQChr14g0437101 Helianthus annuus HOM05D004147 ORTHO05D005606 6.4e-120 434.5 282 81.2
SGA_v2.0_scaffold6G03333 Striga asiatica HOM05D000201 ORTHO05D005606 8.3e-120 434.1 310 72.9
Aa31LG5G4940 Aethionema arabicum HOM05D004147 ORTHO05D005606 1.8e-119 433.0 321 76.6
Hma1.2p1_0589F.1_g184660 Hydrangea macrophylla HOM05D004147 ORTHO05D005606 1.8e-119 433.0 316 73.7
AT2G32080 Arabidopsis thaliana HOM05D004147 ORTHO05D005606 4.1e-119 431.8 273 80.6
A05p13420 Brassica napus HOM05D004147 ORTHO05D005606 7.0e-119 431.0 298 79.2
Ah.04g161370 Amaranthus hybridus HOM05D004147 ORTHO05D005606 1.0e-117 427.2 306 74.5
AL103U10050 Arabidopsis lyrata HOM05D004147 ORTHO05D005606 1.5e-116 423.3 297 80.1
AL4G27460 Arabidopsis lyrata HOM05D004147 ORTHO05D005606 1.5e-116 423.3 297 80.1
HPP92_018009 Vanilla planifolia HOM05D004147 ORTHO05D005606 1.5e-116 423.3 299 72.9
AUR62042623 Chenopodium quinoa HOM05D004147 ORTHO05D005606 2.5e-116 422.5 309 70.9
Sc16g0009630 Simmondsia chinensis HOM05D004147 ORTHO05D005606 5.6e-116 421.4 298 72.5
SalBow3G0983 Salvia bowleyana HOM05D004147 ORTHO05D005606 2.3e-114 416.0 279 77.4
Actinidia16222 Actinidia chinensis HOM05D000201 ORTHO05D001601 4.0e-114 415.2 268 79.5
CDE09G0171 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 1.4e-111 406.8 264 73.1
Zm00001eb127970 Zea mays HOM05D004147 ORTHO05D005606 5.4e-111 404.8 276 73.6
Zm00001eb333400 Zea mays HOM05D004147 ORTHO05D005606 9.2e-111 404.1 276 73.9
Os01g0260700 Oryza sativa ssp. japonica HOM05D004147 ORTHO05D005606 1.2e-110 403.7 276 73.6
CDE04G0726 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 4.6e-110 401.7 297 68.7
Manes.15G111500 Manihot esculenta HOM05D004147 ORTHO05D005606 5.2e-106 388.3 233 85.8
Psat7g134480 Pisum sativum HOM05D004147 ORTHO05D005606 6.8e-106 387.9 222 88.3
CAN.G281.7 Capsicum annuum HOM05D004147 ORTHO05D005606 2.9e-104 382.5 262 76.3
Lsat_1_v5_gn_2_50601 Lactuca sativa HOM05D004147 ORTHO05D005606 2.9e-104 382.5 288 72.6
Sed0015400 Sechium edule HOM05D004147 ORTHO05D005606 1.6e-102 376.7 257 82.1
CDE02G2463 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 2.5e-100 369.4 264 69.3
Nitab4.5_0000075g0060 Nicotiana tabacum HOM05D004147 ORTHO05D005606 3.2e-95 352.4 299 68.9
Nitab4.5_0000890g0080 Nicotiana tabacum HOM05D004147 ORTHO05D005606 3.2e-95 352.4 299 68.2
TAR623G0822 Trochodendron aralioides HOM05D004147 ORTHO05D005606 7.8e-94 347.8 198 87.4
unitig_62.g23531 Utricularia gibba HOM05D004147 ORTHO05D005606 7.6e-89 331.3 255 68.2
Sabra03G0166400 Salix brachista HOM05D004147 ORTHO05D005606 2.9e-88 329.3 181 91.2
CDE08G0894 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 1.9e-87 326.6 239 67.4
Actinidia00922 Actinidia chinensis HOM05D004147 ORTHO05D005606 5.6e-84 315.1 190 82.6
AagrBONN_evm.TU.Sc2ySwM_368.1732 Anthoceros agrestis HOM05D004147 ORTHO05D005606 6.2e-83 311.6 281 59.1
BcaB02g10449 Brassica carinata HOM05D004147 ORTHO05D005606 1.1e-82 310.8 235 74.5
Pp3c17_4780 Physcomitrium patens HOM05D004147 ORTHO05D005606 1.8e-82 310.1 279 58.1
CDE02G0470 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 2.0e-81 306.6 246 65.0
Pp3c14_13490 Physcomitrium patens HOM05D004147 ORTHO05D005606 2.6e-81 306.2 277 57.0
Nn7g35773 Nelumbo nucifera HOM05D004147 ORTHO05D005606 1.3e-80 303.9 200 80.0
CDE08G0994 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 1.1e-79 300.8 197 71.1
Solyc01g049680.3 Solanum lycopersicum HOM05D004147 ORTHO05D005606 1.1e-79 300.8 181 82.9
SEGI_18063 Sequoiadendron giganteum HOM05D004147 ORTHO05D005606 3.2e-79 299.3 267 61.4
CBR_g3650 Chara braunii HOM05D004147 ORTHO05D005606 6.6e-77 291.6 295 54.6
Lj1A564T30 Lonicera japonica HOM05D004147 ORTHO05D005606 3.8e-72 275.8 246 65.0
SMO164G0008 Selaginella moellendorffii HOM05D004147 ORTHO05D005606 1.3e-69 267.3 262 55.0
Gorai.009G000700 Gossypium raimondii HOM05D004147 ORTHO05D005606 8.7e-69 264.6 147 91.2
unitig_52.g17528 Utricularia gibba HOM05D004147 ORTHO05D005606 8.1e-67 258.1 190 68.9
Sabra01G0000400 Salix brachista HOM05D004147 ORTHO05D005606 1.3e-48 197.6 116 85.3
Gorai.009G000600 Gossypium raimondii HOM05D004147 ORTHO05D005606 8.5e-40 168.3 120 75.0
Solyc01g049690.4 Solanum lycopersicum HOM05D004147 ORTHO05D005606 1.4e-39 167.5 120 77.5
HPP92_026678 Vanilla planifolia HOM05D004147 ORTHO05D005606 7.2e-39 165.2 128 67.2
MBI05_g14947_MAGBIO Magnolia biondii HOM05D000130 ORTHO05D002599 3.0e-37 159.8 94 81.9
Potri.013G061100 Populus trichocarpa HOM05D004147 ORTHO05D005606 3.0e-37 159.8 260 38.8
CAN.G640.3 Capsicum annuum HOM05D004147 ORTHO05D005606 2.2e-35 153.7 119 68.1
CAN.G678.10 Capsicum annuum HOM05D004147 ORTHO05D005606 7.0e-34 148.7 104 73.1
FAN25G3109 Fragaria x ananassa HOM05D004147 ORTHO05D005606 3.5e-33 146.4 93 92.5
Lj1A564T31 Lonicera japonica HOM05D004147 ORTHO05D005606 3.8e-32 142.9 147 62.6
Lsat_1_v5_gn_4_94280 Lactuca sativa HOM05D004147 ORTHO05D005606 6.5e-32 142.1 232 42.7
PRCOL_00001079 Prasinoderma coloniale HOM05D004147 ORTHO05D005606 2.3e-29 133.7 268 31.0
unitig_52.g17527 Utricularia gibba HOM05D004147 ORTHO05D005606 6.7e-29 132.1 93 73.1
A03p64870 Brassica napus HOM05D004147 ORTHO05D005606 8.8e-29 131.7 186 44.1
C08p28370 Brassica napus HOM05D004147 ORTHO05D021856 8.8e-29 131.7 118 62.7
BolC8t50447H Brassica oleracea HOM05D004147 ORTHO05D021856 8.8e-29 131.7 118 62.7
BolC2t11193H Brassica oleracea HOM05D004147 ORTHO05D005606 1.5e-28 131.0 118 63.6
BcaC03g17178 Brassica carinata HOM05D004147 ORTHO05D021856 2.6e-28 130.2 105 68.6
BraA03t15549Z Brassica rapa HOM05D004147 ORTHO05D018802 7.5e-28 128.6 118 61.9
Oeu023697.1 Olea europaea HOM05D004147 ORTHO05D005606 9.7e-28 128.3 66 92.4
Sabra01G0000300 Salix brachista HOM05D004147 ORTHO05D005606 1.3e-27 127.9 108 76.9
BolC5t32093H Brassica oleracea HOM05D004147 ORTHO05D021856 1.7e-27 127.5 118 61.9
C05p33620 Brassica napus HOM05D004147 ORTHO05D021856 1.8e-26 124.0 118 61.0
TWI32G1322 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 1.8e-26 124.0 259 34.0
C02p30750 Brassica napus HOM05D004147 ORTHO05D021856 4.1e-26 122.9 118 60.2
Cre06.g278208 Chlamydomonas reinhardtii HOM05D004147 ORTHO05D005606 2.2e-24 117.1 251 31.9
BraA05t19995Z Brassica rapa HOM05D004147 ORTHO05D018802 2.1e-22 110.5 155 41.3
BcaC07g39671 Brassica carinata HOM05D004147 ORTHO05D005606 3.6e-22 109.8 87 65.5
BcaC07g38232 Brassica carinata HOM05D004147 ORTHO05D005606 1.8e-21 107.5 155 41.9
BraA09t36212Z Brassica rapa HOM05D004147 ORTHO05D018802 9.8e-20 101.7 83 65.1
TAR623G1050 Trochodendron aralioides HOM05D004147 ORTHO05D005606 1.3e-16 91.3 69 72.5
HanXRQChr10g0307541 Helianthus annuus HOM05D004147 ORTHO05D005606 3.8e-16 89.7 91 52.7
Lsat_1_v5_gn_8_97821 Lactuca sativa HOM05D004147 ORTHO05D005606 8.8e-13 78.6 43 86.0


User provided reference genes

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