Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0074251 Rosa chinensis HOM05D004250 ORTHO05D005264 1.3e-78 296.6 185 100.0
FAN21G3674 Fragaria x ananassa HOM05D004250 ORTHO05D005264 1.6e-39 166.8 114 96.5
FAN25G1562 Fragaria x ananassa HOM05D004250 ORTHO05D005264 1.0e-38 164.1 114 94.7
FvH4_3g41360 Fragaria vesca HOM05D004250 ORTHO05D005264 2.3e-38 162.9 114 93.9
FAN11G0503 Fragaria x ananassa HOM05D004250 ORTHO05D005264 2.3e-38 162.9 114 93.9
FAN16G1338 Fragaria x ananassa HOM05D004250 ORTHO05D005264 6.7e-38 161.4 114 93.0
MD11G1047700 Malus domestica HOM05D004250 ORTHO05D005264 4.5e-34 148.7 114 88.6
Prupe.6G036800 Prunus persica HOM05D004250 ORTHO05D005264 1.9e-32 143.3 116 87.1
Psat5g231040 Pisum sativum HOM05D004250 ORTHO05D005264 3.2e-32 142.5 114 65.8
MD03G1045500 Malus domestica HOM05D004250 ORTHO05D005264 4.2e-32 142.1 114 82.5
Medtr3g009270 Medicago truncatula HOM05D004250 ORTHO05D005264 1.2e-31 140.6 114 64.9
Lj3g0022167 Lotus japonicus HOM05D004250 ORTHO05D005264 1.6e-31 140.2 114 64.0
Thecc.07G000400 Theobroma cacao HOM05D004250 ORTHO05D005264 4.7e-31 138.7 114 70.2
Haze_09928 Corylus avellana HOM05D004250 ORTHO05D005264 7.9e-31 137.9 114 77.2
Ca_14123_v3 Cicer arietinum L. HOM05D004250 ORTHO05D005264 1.0e-30 137.5 114 64.0
Phvul.005G006100 Phaseolus vulgaris HOM05D004250 ORTHO05D005264 1.4e-30 137.1 117 64.1
PGR031G3775 Punica granatum HOM05D004250 ORTHO05D005264 1.4e-30 137.1 113 68.1
CiPaw.11G211400 Carya illinoinensis HOM05D004250 ORTHO05D005264 1.8e-30 136.7 114 62.3
Lalb_Chr04g0259411 Lupinus albus HOM05D004250 ORTHO05D005264 2.3e-30 136.3 114 61.4
COL.COLO4_07798 Corchorus olitorius HOM05D004098 ORTHO05D005215 3.0e-30 136.0 114 73.7
Lalb_Chr18g0048731 Lupinus albus HOM05D004250 ORTHO05D005264 3.9e-30 135.6 114 63.2
TPR.G16718 Trifolium pratense HOM05D004250 ORTHO05D005264 3.9e-30 135.6 114 64.0
VMungo1080G0729 Vigna mungo HOM05D004250 ORTHO05D005264 3.9e-30 135.6 117 63.2
Duzib170G0346 Durio zibethinus HOM05D004250 ORTHO05D005264 5.2e-30 135.2 114 69.3
Gohir.A13G127700 Gossypium hirsutum HOM05D004250 ORTHO05D005264 5.2e-30 135.2 115 62.6
Gohir.D13G131400 Gossypium hirsutum HOM05D004250 ORTHO05D005264 5.2e-30 135.2 115 62.6
Gorai.013G147400 Gossypium raimondii HOM05D004250 ORTHO05D005264 5.2e-30 135.2 115 62.6
Manes.01G008200 Manihot esculenta HOM05D004250 ORTHO05D005264 6.7e-30 134.8 114 63.2
CsaV3_7G021250 Cucumis sativus L. HOM05D004250 ORTHO05D005264 8.8e-30 134.4 111 63.1
Glyma.06G320400 Glycine max HOM05D004250 ORTHO05D005264 1.1e-29 134.0 114 66.7
ClCG09G021790 Citrullus lanatus HOM05D004250 ORTHO05D005264 1.5e-29 133.7 111 63.1
MELO3C013230.2 Cucumis melo HOM05D004250 ORTHO05D005264 1.5e-29 133.7 111 63.1
Rhsim04G0006600 Rhododendron simsii HOM05D004250 ORTHO05D005264 1.5e-29 133.7 116 61.2
CANSAT11G0977 Cannabis sativa HOM05D004250 ORTHO05D005264 2.6e-29 132.9 114 74.6
Oeu052877.1 Olea europaea HOM05D004250 ORTHO05D005264 2.6e-29 132.9 114 62.3
Glyma.04G115900 Glycine max HOM05D004250 ORTHO05D005264 3.3e-29 132.5 115 63.5
Duzib268G1454 Durio zibethinus HOM05D004250 ORTHO05D005264 4.4e-29 132.1 114 71.1
C09p47550 Brassica napus HOM05D004250 ORTHO05D005264 5.7e-29 131.7 119 59.7
Thhalv10014144m.g Eutrema salsugineum HOM05D004250 ORTHO05D005264 7.4e-29 131.3 117 60.7
Nn2g14378 Nelumbo nucifera HOM05D004250 ORTHO05D005264 7.4e-29 131.3 114 67.5
GSVIVG01014869001 Vitis vinifera HOM05D004250 ORTHO05D005264 7.4e-29 131.3 114 72.8
Manes.01G008500 Manihot esculenta HOM05D004250 ORTHO05D005264 9.7e-29 131.0 114 61.4
BcaC04g20112 Brassica carinata HOM05D004250 ORTHO05D005264 1.3e-28 130.6 117 59.8
BolC9t57609H Brassica oleracea HOM05D004250 ORTHO05D005264 1.3e-28 130.6 117 59.8
Carub.0008s1660 Capsella rubella HOM05D004250 ORTHO05D005264 1.3e-28 130.6 114 59.6
Atru.chr2.3911 Acer truncatum HOM05D004250 ORTHO05D005264 1.7e-28 130.2 116 61.2
Ciclev10008979m.g Citrus clementina HOM05D004250 ORTHO05D005264 1.7e-28 130.2 114 71.1
Lsat_1_v5_gn_9_88440 Lactuca sativa HOM05D004250 ORTHO05D005264 1.7e-28 130.2 112 64.3
AL8G31910 Arabidopsis lyrata HOM05D004250 ORTHO05D005264 2.2e-28 129.8 114 59.6
AT5G56280 Arabidopsis thaliana HOM05D004250 ORTHO05D005264 2.2e-28 129.8 114 59.6
Cc05_g15830 Coffea canephora HOM05D004250 ORTHO05D005264 2.2e-28 129.8 116 61.2
Nn1g07611 Nelumbo nucifera HOM05D004250 ORTHO05D005264 2.2e-28 129.8 118 58.5
Sed0017579 Sechium edule HOM05D004250 ORTHO05D005264 2.2e-28 129.8 114 61.4
Solyc10g005660.3 Solanum lycopersicum HOM05D004250 ORTHO05D005264 2.2e-28 129.8 114 61.4
PGSC0003DMG400011272 Solanum tuberosum HOM05D004250 ORTHO05D005264 2.2e-28 129.8 114 62.3
THA.LOC104817729 Tarenaya hassleriana HOM05D004250 ORTHO05D005264 2.8e-28 129.4 117 58.1
TWI38G1388 Tripterygium wilfordii HOM05D004250 ORTHO05D005264 2.8e-28 129.4 114 61.4
unitig_46.g18525 Utricularia gibba HOM05D004250 ORTHO05D005264 2.8e-28 129.4 114 62.3
THA.LOC104811707 Tarenaya hassleriana HOM05D004250 ORTHO05D005264 3.7e-28 129.0 114 60.5
arahy.Tifrunner.gnm1.ann1.22L1JW Arachis hypogaea HOM05D004250 ORTHO05D005264 4.8e-28 128.6 114 61.4
arahy.Tifrunner.gnm1.ann1.LZ5KER Arachis hypogaea HOM05D004250 ORTHO05D005264 4.8e-28 128.6 114 61.4
MSTRG.14533 Avicennia marina HOM05D004250 ORTHO05D005264 4.8e-28 128.6 114 61.4
Aa31LG5G11770 Aethionema arabicum HOM05D004250 ORTHO05D005264 6.3e-28 128.3 114 58.8
Migut.M01574 Erythranthe guttata HOM05D004250 ORTHO05D005264 6.3e-28 128.3 114 61.4
Aa31LG3G12190 Aethionema arabicum HOM05D004250 ORTHO05D005264 8.2e-28 127.9 117 58.1
TAR626G0831 Trochodendron aralioides HOM05D004250 ORTHO05D005264 8.2e-28 127.9 114 60.5
AL7G26520 Arabidopsis lyrata HOM05D004250 ORTHO05D005264 2.4e-27 126.3 114 59.6
CAN.G943.20 Capsicum annuum HOM05D004250 ORTHO05D005264 2.4e-27 126.3 114 59.6
Potri.011G169900 Populus trichocarpa HOM05D004250 ORTHO05D005264 2.4e-27 126.3 114 60.5
Sp6g18130 Schrenkiella parvula HOM05D004250 ORTHO05D005264 2.4e-27 126.3 117 58.1
SGA_v2.0_scaffold186G40229 Striga asiatica HOM05D004250 ORTHO05D005264 2.4e-27 126.3 111 62.2
TWI14G0209 Tripterygium wilfordii HOM05D004250 ORTHO05D005264 2.4e-27 126.3 114 60.5
TWI39G0164 Tripterygium wilfordii HOM05D004250 ORTHO05D005264 2.4e-27 126.3 114 60.5
A10p13550 Brassica napus HOM05D004250 ORTHO05D005264 3.1e-27 125.9 114 57.9
BraA10t43459Z Brassica rapa HOM05D004250 ORTHO05D005264 3.1e-27 125.9 114 57.9
Carub.0007s1450 Capsella rubella HOM05D004250 ORTHO05D005264 3.1e-27 125.9 114 59.6
CARHR269680 Cardamine hirsuta HOM05D004250 ORTHO05D005264 3.1e-27 125.9 117 58.1
CSS0003988 Camellia sinensis var. sinensis HOM05D004250 ORTHO05D005264 4.1e-27 125.6 114 59.6
CSS0046656 Camellia sinensis var. sinensis HOM05D004250 ORTHO05D005264 4.1e-27 125.6 114 59.6
Thhalv10025688m.g Eutrema salsugineum HOM05D004250 ORTHO05D005264 4.1e-27 125.6 121 57.0
HanXRQChr03g0076651 Helianthus annuus HOM05D004250 ORTHO05D005264 4.1e-27 125.6 123 64.2
Sp7g24340 Schrenkiella parvula HOM05D004250 ORTHO05D005264 4.1e-27 125.6 114 56.1
AT4G26430 Arabidopsis thaliana HOM05D004250 ORTHO05D005264 5.3e-27 125.2 114 58.8
Gohir.A08G026400 Gossypium hirsutum HOM05D004250 ORTHO05D005264 5.3e-27 125.2 114 77.2
Gohir.D08G036800 Gossypium hirsutum HOM05D004250 ORTHO05D005264 5.3e-27 125.2 114 77.2
Gorai.004G034800 Gossypium raimondii HOM05D004250 ORTHO05D005264 5.3e-27 125.2 114 77.2
HanXRQChr13g0409281 Helianthus annuus HOM05D004250 ORTHO05D005264 5.3e-27 125.2 112 61.6
Sabra11G0137100 Salix brachista HOM05D004250 ORTHO05D005264 5.3e-27 125.2 114 59.6
AUR62014705 Chenopodium quinoa HOM05D004250 ORTHO05D005264 7.0e-27 124.8 114 57.9
SGA_v2.0_scaffold7G03561 Striga asiatica HOM05D004250 ORTHO05D005264 7.0e-27 124.8 132 56.1
AUR62012490 Chenopodium quinoa HOM05D004250 ORTHO05D005264 1.2e-26 124.0 114 57.9
ECA240G3010 Erigeron canadensis HOM05D004250 ORTHO05D005264 1.6e-26 123.6 111 61.3
Oeu061794.1 Olea europaea HOM05D004250 ORTHO05D005264 1.6e-26 123.6 114 76.3
Oeu052019.1 Olea europaea HOM05D004250 ORTHO05D005264 2.0e-26 123.2 114 61.4
A03p56690 Brassica napus HOM05D004250 ORTHO05D005264 2.6e-26 122.9 117 58.1
BraA03t14739Z Brassica rapa HOM05D004250 ORTHO05D005264 2.6e-26 122.9 117 58.1
CSS0027583 Camellia sinensis var. sinensis HOM05D004250 ORTHO05D005264 2.6e-26 122.9 114 77.2
Sopen10g001630 Solanum pennellii HOM05D004250 ORTHO05D005264 2.6e-26 122.9 114 71.1
CARHR233990 Cardamine hirsuta HOM05D004250 ORTHO05D005264 3.5e-26 122.5 121 52.9
Sc03g0011830 Simmondsia chinensis HOM05D004250 ORTHO05D005264 3.5e-26 122.5 114 72.8
vmacro09793 Vaccinium macrocarpon HOM05D004250 ORTHO05D005264 3.5e-26 122.5 149 55.0
EL10Ac8g20543 Beta vulgaris HOM05D004250 ORTHO05D005264 7.7e-26 121.3 114 57.9
BcaC06g32749 Brassica carinata HOM05D004250 ORTHO05D005264 1.3e-25 120.6 114 55.3
BcaNung02422 Brassica carinata HOM05D004250 ORTHO05D005264 1.3e-25 120.6 114 55.3
Cpa.g.sc12.53 Carica papaya HOM05D004250 ORTHO05D005264 1.7e-25 120.2 108 59.3
Nitab4.5_0004488g0050 Nicotiana tabacum HOM05D004250 ORTHO05D005264 2.2e-25 119.8 114 68.4
Nitab4.5_0000611g0160 Nicotiana tabacum HOM05D004250 ORTHO05D005264 2.9e-25 119.4 114 58.8
A01p17650 Brassica napus HOM05D004250 ORTHO05D005264 3.8e-25 119.0 114 57.9
BraA01t01720Z Brassica rapa HOM05D004250 ORTHO05D005264 3.8e-25 119.0 114 57.9
DCAR_013752 Daucus carota HOM05D004250 ORTHO05D005264 3.8e-25 119.0 115 60.0
Sed0022093 Sechium edule HOM05D004250 ORTHO05D005264 3.8e-25 119.0 109 56.0
Hund12926 Selenicereus undatus HOM05D004250 ORTHO05D005264 3.8e-25 119.0 113 59.3
QL08p000150 Quercus lobata HOM05D004250 ORTHO05D005264 5.0e-25 118.6 113 67.3
BcaC09g50705 Brassica carinata HOM05D004250 ORTHO05D005264 6.5e-25 118.2 114 55.3
C07p54890 Brassica napus HOM05D004250 ORTHO05D005264 6.5e-25 118.2 114 55.3
BolC1t02162H Brassica oleracea HOM05D004250 ORTHO05D005264 6.5e-25 118.2 114 55.3
BolC7t45977H Brassica oleracea HOM05D004250 ORTHO05D005264 6.5e-25 118.2 114 55.3
BcaNung02419 Brassica carinata HOM05D004250 ORTHO05D005264 8.5e-25 117.9 114 55.3
SalBow8G0719 Salvia bowleyana HOM05D004250 ORTHO05D005264 1.1e-24 117.5 114 57.9
CDE02G0966 Ceratophyllum demersum HOM05D004250 ORTHO05D005264 1.5e-24 117.1 113 55.8
Lj1A902T42 Lonicera japonica HOM05D004250 ORTHO05D005264 1.5e-24 117.1 114 76.3
C01p22290 Brassica napus HOM05D004250 ORTHO05D005264 1.9e-24 116.7 114 55.3
PSO063G3722 Papaver somniferum HOM05D004250 ORTHO05D005264 2.5e-24 116.3 113 58.4
PSO782G2166 Papaver somniferum HOM05D004250 ORTHO05D005264 2.5e-24 116.3 113 58.4
DCAR_016810 Daucus carota HOM05D004250 ORTHO05D005264 9.4e-24 114.4 114 56.1
Aqoxy3G04043 Aquilegia oxysepala HOM05D004250 ORTHO05D005264 1.2e-23 114.0 111 57.7
SHI16643 Sapria himalayana HOM05D004250 ORTHO05D005264 2.1e-23 113.2 111 54.1
SEGI_37935 Sequoiadendron giganteum HOM05D004250 ORTHO05D005264 3.0e-22 109.4 110 54.5
Os08g0500000 Oryza sativa ssp. japonica HOM05D004250 ORTHO05D005264 4.0e-22 109.0 113 54.0
Peaxi162Scf00232g00910 Petunia axillaris HOM05D004250 ORTHO05D005264 2.0e-21 106.7 98 58.2
ATR0751G160 Amborella trichopoda HOM05D004250 ORTHO05D005264 2.6e-21 106.3 113 52.2
Zm00001eb199540 Zea mays HOM05D004250 ORTHO05D005264 4.8e-20 102.1 107 53.3
Ah.09g236430 Amaranthus hybridus HOM05D004250 ORTHO05D005264 8.2e-20 101.3 114 48.2
Zm00001eb034040 Zea mays HOM05D004250 ORTHO05D005264 1.4e-19 100.5 114 50.0
Mapoly0151s0043 Marchantia polymorpha HOM05D004250 ORTHO05D005264 5.3e-19 98.6 110 50.0
Pp3c14_22830 Physcomitrium patens HOM05D004250 ORTHO05D005264 9.1e-19 97.8 110 50.0
SMO367G0766 Selaginella moellendorffii HOM05D004250 ORTHO05D005264 2.7e-18 96.3 110 52.7
Hma1.2p1_0193F.1_g084430 Hydrangea macrophylla HOM05D004250 ORTHO05D005264 4.5e-18 95.5 113 51.3
AagrBONN_evm.TU.Sc2ySwM_362.2287 Anthoceros agrestis HOM05D004250 ORTHO05D005264 1.3e-17 94.0 116 47.4
CBR_g38485 Chara braunii HOM05D004250 ORTHO05D005264 8.8e-14 81.3 112 42.9
PGSC0003DMG400022138 Solanum tuberosum HOM05D004250 ORTHO05D005264 1.2e-13 80.9 114 43.9
Pp3c17_21990 Physcomitrium patens HOM05D004250 ORTHO05D005264 3.7e-12 75.9 106 42.5
Nitab4.5_0000294g0190 Nicotiana tabacum HOM05D004250 ORTHO05D005264 3.5e-10 69.3 95 67.4
Nitab4.5_0001235g0020 Nicotiana tabacum HOM05D004250 ORTHO05D005264 1.0e-09 67.8 95 66.3
Actinidia37105 Actinidia chinensis HOM05D004250 ORTHO05D005264 1.7e-09 67.0 79 49.4
Dinv19634 Davidia involucrata HOM05D004250 ORTHO05D005264 1.5e-08 63.9 40 77.5
Cre11.g467647 Chlamydomonas reinhardtii HOM05D004250 ORTHO05D005264 4.2e-08 62.4 112 38.4
Actinidia35441 Actinidia chinensis HOM05D004250 ORTHO05D005264 7.2e-08 61.6 40 75.0
MCO07G296 Micromonas commoda HOM05D004250 ORTHO05D005264 8.0e-07 58.2 90 37.8
Dinv42528 Davidia involucrata HOM05D004250 ORTHO05D005264 1.4e-06 57.4 29 89.7
Os12g0621900 Oryza sativa ssp. japonica HOM05D004250 ORTHO05D005264 8.8e-06 54.7 43 53.5


User provided reference genes

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