Gene: AT5G56280
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT5G56280
- Transcript Identifier AT5G56280.1
- Gene Type Coding gene
- Location Chr5 : 22783617-22785530 : negative
Gene Family Information
- ID HOM05D004250
- #Genes/#Species 167/97
- Phylogenetic origin
- ID ORTHO05D005264
- #Genes/#Species 161/96
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT5G56280.1
- symbol CSN6A
- uniprot Q8W206
Descriptions
- Description COP9 signalosome subunit 6A
- Computational description COP9 signalosome subunit 6A (CSN6A); CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555); BEST Arabidopsis thaliana protein match is: COP9 signalosome subunit 6B (TAIR:AT4G26430.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:1990641 | ISO | PLAZA Integrative Orthology | response to iron ion starvation | Os08g0500000 |
| GO:0000338 | IEA | Gene Ontology | protein deneddylation | |
| GO:0000338 | IEA | InterPro | protein deneddylation | |
| GO:0010017 | IEA | GOA Database | red or far-red light signaling pathway | |
| GO:0009585 | IEA | GOA Database | red, far-red light phototransduction | |
| GO:0010387 | IMP | Gene Ontology | COP9 signalosome assembly | 1 |
| GO:0007275 | IMP | Gene Ontology | multicellular organism development | 2 |
| GO:0006511 | IMP | Gene Ontology | ubiquitin-dependent protein catabolic process | 2 |
| GO:0009640 | TAS | Gene Ontology | photomorphogenesis | 3 |
| GO:0030163 | TAS | Gene Ontology | protein catabolic process | 4 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0070122 | IEA | Gene Ontology | isopeptidase activity | |
| GO:0070122 | IEA | InterPro | isopeptidase activity | |
| GO:0008237 | IEA | Gene Ontology | metallopeptidase activity | |
| GO:0008237 | IEA | InterPro | metallopeptidase activity | |
| GO:0005515 | IPI | Gene Ontology | protein binding | 2 |
| GO:0005515 | IEA | InterPro | protein binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0008180 | IEA | GOA Database | COP9 signalosome | |
| GO:0008180 | IPI IBA TAS | Gene Ontology | COP9 signalosome | 3 5 6 |
| GO:0008180 | IEA | InterPro | COP9 signalosome | |
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | TAS | Gene Ontology | nucleus | 4 |
| GO:0005737 | IEA | GOA Database | cytoplasm |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 19.2.3.3.1.6 | Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein deconjugation.RUB deconjugation.COP9 signalosome complex.component CSN6 |