Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0068911 Rosa chinensis HOM05D001051 ORTHO05D000886 8.2e-70 266.9 133 100.0
RcHm_v2.0_Chr6g0299051 Rosa chinensis HOM05D001051 ORTHO05D000886 2.5e-55 218.8 134 85.1
RcHm_v2.0_Chr5g0037591 Rosa chinensis HOM05D001051 ORTHO05D000886 1.5e-52 209.5 125 86.4
RcHm_v2.0_Chr3g0493071 Rosa chinensis HOM05D001051 ORTHO05D000886 1.5e-39 166.4 93 89.2
RcHm_v2.0_Chr4g0429741 Rosa chinensis HOM05D001051 ORTHO05D000886 1.6e-33 146.4 89 85.4
FvH4_2g41420 Fragaria vesca HOM05D001051 ORTHO05D000886 2.1e-33 146.0 127 70.1
Prupe.1G398700 Prunus persica HOM05D001051 ORTHO05D000886 4.7e-33 144.8 145 57.9
FAN15G2836 Fragaria x ananassa HOM05D001051 ORTHO05D000886 6.1e-33 144.4 127 69.3
MD08G1049600 Malus domestica HOM05D001051 ORTHO05D000886 8.0e-33 144.1 140 60.7
FAN27G0994 Fragaria x ananassa HOM05D001051 ORTHO05D000886 1.4e-32 143.3 127 69.3
RcHm_v2.0_Chr5g0033381 Rosa chinensis HOM05D001051 ORTHO05D000886 3.0e-32 142.1 93 78.5
Thecc.09G011100 Theobroma cacao HOM05D001051 ORTHO05D000886 1.2e-31 140.2 144 57.6
COL.COLO4_18994 Corchorus olitorius HOM05D001051 ORTHO05D000886 1.5e-31 139.8 144 57.6
ClCG08G013860 Citrullus lanatus HOM05D001051 ORTHO05D000886 4.4e-31 138.3 144 55.6
Gohir.A05G062400 Gossypium hirsutum HOM05D001051 ORTHO05D000886 4.4e-31 138.3 144 57.6
Cpa.g.sc1332.1 Carica papaya HOM05D001051 ORTHO05D000886 1.7e-30 136.3 148 58.1
MD15G1045000 Malus domestica HOM05D001051 ORTHO05D000886 1.4e-29 133.3 140 57.9
Cfa013008 Carpinus fangiana HOM05D001051 ORTHO05D000886 1.8e-29 132.9 146 55.5
Gohir.D05G064900 Gossypium hirsutum HOM05D001051 ORTHO05D000886 1.8e-29 132.9 144 56.2
Gorai.009G065600 Gossypium raimondii HOM05D001051 ORTHO05D000886 3.1e-29 132.1 144 56.2
Haze_21368 Corylus avellana HOM05D001051 ORTHO05D000886 7.0e-29 131.0 147 55.1
Haze_21369 Corylus avellana HOM05D001051 ORTHO05D000886 7.0e-29 131.0 147 55.1
Duzib187G0898 Durio zibethinus HOM05D001051 ORTHO05D000886 1.2e-28 130.2 139 56.1
Duzib168G1474 Durio zibethinus HOM05D001051 ORTHO05D000886 1.6e-28 129.8 144 55.6
Gohir.D13G186900 Gossypium hirsutum HOM05D001051 ORTHO05D000886 1.6e-28 129.8 139 58.3
Gohir.A13G178800 Gossypium hirsutum HOM05D001051 ORTHO05D000886 7.7e-28 127.5 140 57.9
Gorai.010G245200 Gossypium raimondii HOM05D001051 ORTHO05D000886 7.7e-28 127.5 140 57.1
Manes.16G133200 Manihot esculenta HOM05D001051 ORTHO05D000886 1.3e-27 126.7 147 56.5
Duzib150G0335 Durio zibethinus HOM05D001051 ORTHO05D000886 2.2e-27 125.9 146 54.1
MELO3C011317.2 Cucumis melo HOM05D001051 ORTHO05D000886 2.9e-27 125.6 144 52.8
CsaV3_2G032640 Cucumis sativus L. HOM05D001051 ORTHO05D000886 6.5e-27 124.4 144 52.1
CiPaw.08G004200 Carya illinoinensis HOM05D001051 ORTHO05D000886 3.2e-26 122.1 160 50.0
QL02p017987 Quercus lobata HOM05D001051 ORTHO05D000886 2.7e-25 119.0 144 52.1
Ciclev10008813m.g Citrus clementina HOM05D001051 ORTHO05D000886 3.0e-24 115.5 145 53.8
TWI34G0834 Tripterygium wilfordii HOM05D001051 ORTHO05D000886 4.4e-23 111.7 137 53.3
Atru.chr7.2602 Acer truncatum HOM05D001051 ORTHO05D000886 9.8e-23 110.5 143 51.7
BraA06t26496Z Brassica rapa HOM05D001051 ORTHO05D000886 1.7e-22 109.8 150 46.7
A06p35720 Brassica napus HOM05D001051 ORTHO05D000886 6.3e-22 107.8 149 46.3
C07p42820 Brassica napus HOM05D001051 ORTHO05D000886 6.3e-22 107.8 149 46.3
CiPaw.07G233300 Carya illinoinensis HOM05D001051 ORTHO05D000886 7.0e-21 104.4 150 45.3
Sp2g22520 Schrenkiella parvula HOM05D001051 ORTHO05D000886 1.2e-20 103.6 152 46.1
CANSAT25G0698 Cannabis sativa HOM05D001051 ORTHO05D000886 2.7e-20 102.4 143 46.9
Thhalv10004744m.g Eutrema salsugineum HOM05D001051 ORTHO05D000886 2.7e-20 102.4 152 46.1
TWI32G1078 Tripterygium wilfordii HOM05D001051 ORTHO05D000886 2.7e-20 102.4 139 46.8
CARHR188510 Cardamine hirsuta HOM05D001051 ORTHO05D000886 5.9e-20 101.3 152 44.7
BolC7t44810H Brassica oleracea HOM05D001051 ORTHO05D000886 7.7e-20 100.9 149 44.3
Manes.03G006000 Manihot esculenta HOM05D001051 ORTHO05D000886 7.7e-20 100.9 142 50.0
THA.LOC104803328 Tarenaya hassleriana HOM05D001051 ORTHO05D000886 2.3e-19 99.4 136 50.0
Glyma.04G058900 Glycine max HOM05D001051 ORTHO05D000886 5.0e-19 98.2 130 50.8
C09p07040 Brassica napus HOM05D001051 ORTHO05D000886 8.6e-19 97.4 143 44.1
Phvul.009G085300 Phaseolus vulgaris HOM05D001051 ORTHO05D000886 2.5e-18 95.9 130 50.0
BcaB04g19806 Brassica carinata HOM05D001051 ORTHO05D000886 7.2e-18 94.4 124 46.8
BcaC04g23566 Brassica carinata HOM05D001051 ORTHO05D000886 7.2e-18 94.4 144 44.4
BolC9t53620H Brassica oleracea HOM05D001051 ORTHO05D000886 7.2e-18 94.4 144 44.4
VMungo1309G0098 Vigna mungo HOM05D001051 ORTHO05D000886 9.5e-18 94.0 130 48.5
A09p06350 Brassica napus HOM05D001051 ORTHO05D000886 2.8e-17 92.4 117 47.9
Aa31LG11G4130 Aethionema arabicum HOM05D001051 ORTHO05D000886 8.0e-17 90.9 124 45.2
BraA09t36280Z Brassica rapa HOM05D001051 ORTHO05D000886 1.8e-16 89.7 120 47.5
Potri.018G013800 Populus trichocarpa HOM05D001051 ORTHO05D000886 3.0e-16 89.0 152 46.1
Gohir.D07G037800 Gossypium hirsutum HOM05D001051 ORTHO05D000886 8.9e-16 87.4 151 43.7
THA.LOC104814980 Tarenaya hassleriana HOM05D001051 ORTHO05D000886 1.2e-15 87.0 141 42.6
Prupe.1G019200 Prunus persica HOM05D001051 ORTHO05D000886 2.0e-15 86.3 88 54.5
arahy.Tifrunner.gnm1.ann1.ZS9VWH Arachis hypogaea HOM05D001051 ORTHO05D000886 3.4e-15 85.5 133 46.6
Glyma.06G059600 Glycine max HOM05D001051 ORTHO05D000886 3.4e-15 85.5 129 46.5
arahy.Tifrunner.gnm1.ann1.B9QMIW Arachis hypogaea HOM05D001051 ORTHO05D000886 5.7e-15 84.7 133 46.6
Gohir.A07G034300 Gossypium hirsutum HOM05D001051 ORTHO05D000886 5.7e-15 84.7 147 44.2
AL6G36600 Arabidopsis lyrata HOM05D001051 ORTHO05D000886 7.5e-15 84.3 154 40.9
Sed0010033 Sechium edule HOM05D001051 ORTHO05D000886 1.3e-14 83.6 147 41.5
Gorai.001G039500 Gossypium raimondii HOM05D001051 ORTHO05D000886 1.7e-14 83.2 151 43.0
Potri.006G267700 Populus trichocarpa HOM05D001051 ORTHO05D000886 3.7e-14 82.0 154 44.8
Dinv23726 Davidia involucrata HOM05D001051 ORTHO05D000886 8.3e-14 80.9 165 37.0
AT5G24930 Arabidopsis thaliana HOM05D001051 ORTHO05D000886 1.1e-13 80.5 155 40.0
Sed0001333 Sechium edule HOM05D001051 ORTHO05D000886 3.2e-13 79.0 141 39.7
CSS0018089 Camellia sinensis var. sinensis HOM05D001051 ORTHO05D000886 3.5e-12 75.5 153 37.3
Carub.0006s2280 Capsella rubella HOM05D001051 ORTHO05D000886 5.9e-12 74.7 158 38.0
Sabra06G0209900 Salix brachista HOM05D001051 ORTHO05D000886 1.3e-11 73.6 149 41.6
GSVIVG01036037001 Vitis vinifera HOM05D001051 ORTHO05D000886 5.0e-11 71.6 92 45.7
Aa31sc359G40 Aethionema arabicum HOM05D001051 ORTHO05D000886 8.6e-11 70.9 123 43.1
TAR383G0207 Trochodendron aralioides HOM05D001051 ORTHO05D000886 3.3e-10 68.9 141 38.3
Nn2g12633 Nelumbo nucifera HOM05D001051 ORTHO05D000886 5.6e-10 68.2 147 38.1
Psat6g025680 Pisum sativum HOM05D001051 ORTHO05D000886 1.2e-09 67.0 109 45.9
TPR.G38832 Trifolium pratense HOM05D001051 ORTHO05D000886 1.2e-09 67.0 113 38.9
Lsat_1_v5_gn_5_51381 Lactuca sativa HOM05D001051 ORTHO05D000886 2.1e-09 66.2 164 31.7
Sp4g03750 Schrenkiella parvula HOM05D001051 ORTHO05D000886 2.1e-09 66.2 111 43.2
Lj5g0011349 Lotus japonicus HOM05D001051 ORTHO05D000886 2.8e-09 65.9 118 40.7
Thhalv10000258m.g Eutrema salsugineum HOM05D001051 ORTHO05D000886 6.1e-09 64.7 107 42.1
Actinidia06448 Actinidia chinensis HOM05D001051 ORTHO05D000886 1.0e-08 63.9 152 36.2
GSVIVG01029107001 Vitis vinifera HOM05D001051 ORTHO05D000886 1.4e-08 63.5 146 36.3
SalBow4G1791 Salvia bowleyana HOM05D001051 ORTHO05D000886 3.1e-08 62.4 130 34.6
PGR031G1305 Punica granatum HOM05D001051 ORTHO05D000886 6.8e-08 61.2 121 39.7
MBI14_g37766_MAGBIO Magnolia biondii HOM05D001051 ORTHO05D000886 8.9e-08 60.8 119 41.2
THA.LOC104819945 Tarenaya hassleriana HOM05D001051 ORTHO05D000886 8.9e-08 60.8 111 44.1
Haze_22137 Corylus avellana HOM05D001051 ORTHO05D000886 1.5e-07 60.1 149 34.9
MSTRG.1621 Avicennia marina HOM05D001051 ORTHO05D000886 2.6e-07 59.3 118 35.6
Nn8g40382 Nelumbo nucifera HOM05D001051 ORTHO05D000886 2.6e-07 59.3 140 34.3
Nitab4.5_0002912g0030 Nicotiana tabacum HOM05D001051 ORTHO05D000886 2.6e-07 59.3 149 32.9
MSTRG.11797 Avicennia marina HOM05D001051 ORTHO05D000886 3.4e-07 58.9 116 37.1
Lj7A741T44 Lonicera japonica HOM05D001051 ORTHO05D000886 4.4e-07 58.5 159 33.3
unitig_747.g21386 Utricularia gibba HOM05D001051 ORTHO05D000886 5.8e-07 58.2 163 30.1
TAR625G1493 Trochodendron aralioides HOM05D001051 ORTHO05D000886 7.5e-07 57.8 148 35.1
Lalb_Chr08g0244561 Lupinus albus HOM05D001051 ORTHO05D000886 9.8e-07 57.4 130 38.5
Nn1g03394 Nelumbo nucifera HOM05D001051 ORTHO05D000886 9.8e-07 57.4 122 36.9
ATR0580G367 Amborella trichopoda HOM05D001051 ORTHO05D000886 1.3e-06 57.0 111 35.1
BcaC02g08411 Brassica carinata HOM05D001051 ORTHO05D000886 1.3e-06 57.0 133 38.3
C04p54550 Brassica napus HOM05D001051 ORTHO05D000886 1.3e-06 57.0 133 38.3
BolC4t26998H Brassica oleracea HOM05D001051 ORTHO05D000886 1.3e-06 57.0 133 38.3
Nitab4.5_0001110g0140 Nicotiana tabacum HOM05D001051 ORTHO05D000886 1.3e-06 57.0 149 32.2
SalBow8G1524 Salvia bowleyana HOM05D001051 ORTHO05D000886 1.3e-06 57.0 113 33.6
MSTRG.13953 Avicennia marina HOM05D001051 ORTHO05D000886 1.7e-06 56.6 156 30.8
Eucgr.C01876 Eucalyptus grandis HOM05D001051 ORTHO05D000886 2.2e-06 56.2 100 43.0
SalBow8G2867 Salvia bowleyana HOM05D001051 ORTHO05D000886 2.2e-06 56.2 113 33.6
Sopen12g032330 Solanum pennellii HOM05D001051 ORTHO05D000886 2.9e-06 55.8 150 29.3
Medtr1g013450 Medicago truncatula HOM05D001051 ORTHO05D000886 4.9e-06 55.1 116 37.9
Nn3g18761 Nelumbo nucifera HOM05D001051 ORTHO05D000886 6.4e-06 54.7 109 39.4
Lalb_Chr23g0268111 Lupinus albus HOM05D001051 ORTHO05D000886 8.3e-06 54.3 126 38.1


User provided reference genes

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