Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0068831 Rosa chinensis HOM05D005817 ORTHO05D007140 6.6e-82 307.4 160 100.0
RcHm_v2.0_Chr7g0219661 Rosa chinensis HOM05D005817 ORTHO05D007140 6.8e-79 297.4 159 97.5
FAN18G1253 Fragaria x ananassa HOM05D005817 ORTHO05D007140 3.1e-76 288.5 157 94.9
FvH4_5g27830 Fragaria vesca HOM05D005817 ORTHO05D007140 9.2e-76 287.0 157 94.3
Prupe.1G585700 Prunus persica HOM05D005817 ORTHO05D007140 3.5e-75 285.0 159 92.5
MD08G1248300 Malus domestica HOM05D005817 ORTHO05D007140 8.6e-74 280.4 158 90.5
MD15G1443200 Malus domestica HOM05D005817 ORTHO05D007140 7.3e-73 277.3 158 90.5
CANSAT01G0715 Cannabis sativa HOM05D005817 ORTHO05D007140 3.1e-71 271.9 155 89.7
TPR.G6004 Trifolium pratense HOM05D005817 ORTHO05D007140 1.1e-68 263.5 155 87.1
Lalb_Chr07g0176811 Lupinus albus HOM05D005817 ORTHO05D007140 3.2e-68 261.9 155 86.5
Psat4g000960 Pisum sativum HOM05D005817 ORTHO05D007140 7.0e-68 260.8 155 86.5
Medtr4g134630 Medicago truncatula HOM05D005817 ORTHO05D007140 9.2e-68 260.4 155 85.8
Ca_13529_v3 Cicer arietinum L. HOM05D005817 ORTHO05D007140 1.6e-67 259.6 155 86.5
Phvul.003G075900 Phaseolus vulgaris HOM05D005817 ORTHO05D007140 4.6e-67 258.1 155 85.2
FAN04G1604 Fragaria x ananassa HOM05D005817 ORTHO05D007140 1.0e-66 256.9 225 65.8
Lj4g0018327 Lotus japonicus HOM05D005817 ORTHO05D007140 1.7e-66 256.1 155 84.5
QL02p103359 Quercus lobata HOM05D005817 ORTHO05D007140 1.7e-66 256.1 155 85.2
GSVIVG01023145001 Vitis vinifera HOM05D005817 ORTHO05D007140 1.7e-66 256.1 154 87.7
arahy.Tifrunner.gnm1.ann1.86KQ48 Arachis hypogaea HOM05D005817 ORTHO05D007140 2.3e-66 255.8 155 83.9
arahy.Tifrunner.gnm1.ann1.NEQE4P Arachis hypogaea HOM05D005817 ORTHO05D007140 2.3e-66 255.8 155 83.9
TAR628G1209 Trochodendron aralioides HOM05D005817 ORTHO05D007140 3.0e-66 255.4 154 86.4
Haze_09983 Corylus avellana HOM05D005817 ORTHO05D007140 8.6e-66 253.8 155 83.9
VMungo1215G1434 Vigna mungo HOM05D005817 ORTHO05D007140 8.6e-66 253.8 155 83.9
Glyma.17G001900 Glycine max HOM05D005817 ORTHO05D007140 1.5e-65 253.1 155 84.5
CiPaw.06G176700 Carya illinoinensis HOM05D005817 ORTHO05D007140 2.5e-65 252.3 155 83.9
vmacro19830 Vaccinium macrocarpon HOM05D005817 ORTHO05D007140 3.3e-65 251.9 155 84.5
Glyma.07G272500 Glycine max HOM05D005817 ORTHO05D007140 5.6e-65 251.1 155 83.2
Actinidia26194 Actinidia chinensis HOM05D005817 ORTHO05D007140 7.3e-65 250.8 156 82.7
MBI06_g16620_MAGBIO Magnolia biondii HOM05D005817 ORTHO05D007140 1.2e-64 250.0 154 83.8
Eucgr.I02797 Eucalyptus grandis HOM05D005817 ORTHO05D007140 2.1e-64 249.2 155 82.6
Actinidia01635 Actinidia chinensis HOM05D005817 ORTHO05D007140 2.8e-64 248.8 156 82.7
Rhsim05G0115500 Rhododendron simsii HOM05D005817 ORTHO05D007140 3.6e-64 248.4 155 83.9
TAR376G0556 Trochodendron aralioides HOM05D005817 ORTHO05D007140 3.6e-64 248.4 154 83.8
Dinv29679 Davidia involucrata HOM05D005817 ORTHO05D007140 4.7e-64 248.1 155 81.9
Cc02_g23610 Coffea canephora HOM05D005817 ORTHO05D007140 1.1e-63 246.9 155 81.9
Hma1.2p1_0052F.1_g030010 Hydrangea macrophylla HOM05D005817 ORTHO05D007140 2.3e-63 245.7 155 83.2
Hma1.2p1_0052F.1_g030020 Hydrangea macrophylla HOM05D005817 ORTHO05D007140 2.3e-63 245.7 155 83.2
Aqoxy6G00025 Aquilegia oxysepala HOM05D005817 ORTHO05D007140 3.1e-63 245.4 154 82.5
Gohir.D06G122800 Gossypium hirsutum HOM05D005817 ORTHO05D007140 3.1e-63 245.4 156 84.6
Gorai.010G142900 Gossypium raimondii HOM05D005817 ORTHO05D007140 3.1e-63 245.4 156 84.6
Potri.004G229200 Populus trichocarpa HOM05D005817 ORTHO05D007140 3.1e-63 245.4 154 84.4
CSS0044256 Camellia sinensis var. sinensis HOM05D005817 ORTHO05D007140 4.0e-63 245.0 156 80.1
Sabra01G0174300 Salix brachista HOM05D005817 ORTHO05D007140 5.2e-63 244.6 154 85.1
Thecc.06G019900 Theobroma cacao HOM05D005817 ORTHO05D007140 6.8e-63 244.2 156 85.3
Gohir.A06G115800 Gossypium hirsutum HOM05D005817 ORTHO05D007140 8.9e-63 243.8 156 84.6
Lj9C259G5 Lonicera japonica HOM05D001465 ORTHO05D001434 8.9e-63 243.8 159 81.8
Manes.10G106400 Manihot esculenta HOM05D005817 ORTHO05D007140 8.9e-63 243.8 155 83.9
Nitab4.5_0007689g0010 Nicotiana tabacum HOM05D005817 ORTHO05D007140 8.9e-63 243.8 156 79.5
Oeu028475.1 Olea europaea HOM05D005817 ORTHO05D007140 8.9e-63 243.8 155 80.6
Sed0006174 Sechium edule HOM05D005817 ORTHO05D007140 8.9e-63 243.8 155 82.6
Lsat_1_v5_gn_9_83341 Lactuca sativa HOM05D005817 ORTHO05D007140 1.5e-62 243.0 158 80.4
Sc03g0006230 Simmondsia chinensis HOM05D005817 ORTHO05D007140 1.5e-62 243.0 155 79.4
CsaV3_5G027420 Cucumis sativus L. HOM05D005817 ORTHO05D007140 2.6e-62 242.3 155 83.2
Duzib160G0844 Durio zibethinus HOM05D005817 ORTHO05D007140 2.6e-62 242.3 156 83.3
HanXRQChr15g0469671 Helianthus annuus HOM05D005817 ORTHO05D007140 3.4e-62 241.9 157 80.3
Lj5C284T7 Lonicera japonica HOM05D005817 ORTHO05D007140 3.4e-62 241.9 157 80.9
Oeu028476.1 Olea europaea HOM05D005817 ORTHO05D007140 3.4e-62 241.9 155 80.0
PSO017G5300 Papaver somniferum HOM05D005817 ORTHO05D007140 3.4e-62 241.9 154 78.6
Peaxi162Scf00011g01920 Petunia axillaris HOM05D005817 ORTHO05D007140 3.4e-62 241.9 156 78.8
COL.COLO4_31118 Corchorus olitorius HOM05D005817 ORTHO05D007140 4.4e-62 241.5 156 83.3
TWI14G0757 Tripterygium wilfordii HOM05D005817 ORTHO05D007140 4.4e-62 241.5 156 81.4
Nn5g27184 Nelumbo nucifera HOM05D005817 ORTHO05D007140 5.8e-62 241.1 155 81.3
ClCG11G000310 Citrullus lanatus HOM05D005817 ORTHO05D007140 7.5e-62 240.7 155 82.6
PSO170G5162 Papaver somniferum HOM05D005817 ORTHO05D007140 1.3e-61 240.0 154 77.9
Solyc01g103020.4 Solanum lycopersicum HOM05D005817 ORTHO05D007140 1.3e-61 240.0 156 77.6
Sopen01g045430 Solanum pennellii HOM05D005817 ORTHO05D007140 1.3e-61 240.0 156 77.6
Ciclev10002025m.g Citrus clementina HOM05D005817 ORTHO05D007140 1.7e-61 239.6 156 82.1
Manes.07G030600 Manihot esculenta HOM05D005817 ORTHO05D007140 2.2e-61 239.2 155 80.0
Sp2g13800 Schrenkiella parvula HOM05D005817 ORTHO05D007140 1.1e-60 236.9 155 80.0
PGSC0003DMG400020713 Solanum tuberosum HOM05D005817 ORTHO05D007140 1.1e-60 236.9 156 76.9
ATR1089G128 Amborella trichopoda HOM05D005817 ORTHO05D007140 1.4e-60 236.5 156 80.1
CAN.G855.54 Capsicum annuum HOM05D005817 ORTHO05D007140 1.4e-60 236.5 156 78.8
Atru.chr6.226 Acer truncatum HOM05D005817 ORTHO05D007140 1.9e-60 236.1 156 80.1
EL10Ac6g13990 Beta vulgaris HOM05D005817 ORTHO05D007140 1.9e-60 236.1 156 78.2
Hund15375 Selenicereus undatus HOM05D005817 ORTHO05D007140 7.0e-60 234.2 156 76.3
Ah.03g136770 Amaranthus hybridus HOM05D005817 ORTHO05D007140 9.2e-60 233.8 157 77.1
THA.LOC104824089 Tarenaya hassleriana HOM05D005817 ORTHO05D007140 9.2e-60 233.8 155 78.7
CDE07G1199 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 3.5e-59 231.9 155 78.7
Carub.0005s0157 Capsella rubella HOM05D005817 ORTHO05D007140 4.6e-59 231.5 155 76.8
PGR142G3472 Punica granatum HOM05D005817 ORTHO05D007140 7.8e-59 230.7 155 76.1
CDE08G0344 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 1.7e-58 229.6 154 79.9
Thhalv10004677m.g Eutrema salsugineum HOM05D005817 ORTHO05D007140 2.3e-58 229.2 155 76.8
AUR62043876 Chenopodium quinoa HOM05D005817 ORTHO05D007140 3.0e-58 228.8 158 75.9
AUR62032450 Chenopodium quinoa HOM05D005817 ORTHO05D007140 3.9e-58 228.4 159 75.5
SGA_v2.0_scaffold8G04460 Striga asiatica HOM05D005817 ORTHO05D007140 3.9e-58 228.4 155 75.5
AL5G11840 Arabidopsis lyrata HOM05D005817 ORTHO05D007140 1.5e-57 226.5 155 74.2
AT2G02570 Arabidopsis thaliana HOM05D005817 ORTHO05D007140 1.9e-57 226.1 155 74.2
Migut.N00865 Erythranthe guttata HOM05D005817 ORTHO05D007140 1.9e-57 226.1 155 75.5
Aa31LG2G7570 Aethionema arabicum HOM05D005817 ORTHO05D007140 3.3e-57 225.3 146 78.8
C02p50820 Brassica napus HOM05D005817 ORTHO05D007140 1.2e-56 223.4 156 76.3
SHI04993 Sapria himalayana HOM05D005817 ORTHO05D007140 1.2e-56 223.4 155 74.2
unitig_22.g6849 Utricularia gibba HOM05D005817 ORTHO05D007140 2.1e-56 222.6 156 73.7
A06p43560 Brassica napus HOM05D005817 ORTHO05D007140 2.8e-56 222.2 155 75.5
C07p33290 Brassica napus HOM05D005817 ORTHO05D007140 2.8e-56 222.2 155 75.5
BolC7t43840H Brassica oleracea HOM05D005817 ORTHO05D007140 2.8e-56 222.2 155 75.5
BraA06t27241Z Brassica rapa HOM05D005817 ORTHO05D007140 2.8e-56 222.2 155 75.5
FAN08G2336 Fragaria x ananassa HOM05D005817 ORTHO05D007140 4.7e-56 221.5 226 61.1
BcaC06g31224 Brassica carinata HOM05D005817 ORTHO05D007140 8.1e-56 220.7 155 75.5
BolC2t11164H Brassica oleracea HOM05D005817 ORTHO05D007140 1.1e-55 220.3 159 74.2
Os08g0109900 Oryza sativa ssp. japonica HOM05D005817 ORTHO05D007140 2.3e-55 219.2 156 73.7
Lalb_Chr12g0195861 Lupinus albus HOM05D005817 ORTHO05D007140 4.0e-55 218.4 137 82.5
BcaC03g17157 Brassica carinata HOM05D005817 ORTHO05D007140 8.9e-55 217.2 155 74.2
A02p33050 Brassica napus HOM05D005817 ORTHO05D007140 5.8e-54 214.5 155 74.2
Aqoxy385s001 Aquilegia oxysepala HOM05D005817 ORTHO05D007140 1.2e-51 206.8 150 74.0
Mapoly0107s0026 Marchantia polymorpha HOM05D005817 ORTHO05D007140 1.2e-51 206.8 145 71.0
Pp3c10_3580 Physcomitrium patens HOM05D005817 ORTHO05D007140 6.6e-50 201.1 151 68.2
Pp3c10_3582 Physcomitrium patens HOM05D005817 ORTHO05D007140 6.6e-50 201.1 151 68.2
ECA236G3641 Erigeron canadensis HOM05D000284 ORTHO05D000805 1.5e-49 199.9 133 79.7
SMO117G0163 Selaginella moellendorffii HOM05D005817 ORTHO05D007140 9.5e-49 197.2 143 70.6
AagrBONN_evm.TU.Sc2ySwM_117.207 Anthoceros agrestis HOM05D005817 ORTHO05D007140 1.6e-48 196.4 144 68.1
Zm00001eb174130 Zea mays HOM05D005817 ORTHO05D007140 2.1e-48 196.1 133 78.9
Pp3c1_22040 Physcomitrium patens HOM05D005817 ORTHO05D007140 4.2e-44 181.8 144 65.3
CBR_g40810 Chara braunii HOM05D005817 ORTHO05D007140 1.6e-40 169.9 146 61.6
BraA02t08326Z Brassica rapa HOM05D005817 ORTHO05D007140 2.8e-40 169.1 124 73.4
Cpa.g.sc173.14 Carica papaya HOM05D005817 ORTHO05D007140 1.1e-36 157.1 101 85.1
Nitab4.5_0003247g0070 Nicotiana tabacum HOM05D005817 ORTHO05D007140 4.2e-36 155.2 102 78.4
Pp3c14_9240 Physcomitrium patens HOM05D005817 ORTHO05D007140 4.2e-36 155.2 126 63.5
CDE04G1950 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 1.3e-34 150.2 108 73.1
Duzib235G1547 Durio zibethinus HOM05D005817 ORTHO05D007140 5.1e-34 148.3 102 81.4
HPP92_002041 Vanilla planifolia HOM05D005817 ORTHO05D007140 8.7e-34 147.5 109 70.6
CDE02G1227 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 4.3e-33 145.2 154 56.5
MSTRG.27880 Avicennia marina HOM05D005817 ORTHO05D007140 1.3e-21 107.1 81 67.9
FvH4_3g40414 Fragaria vesca HOM05D005817 ORTHO05D007140 5.3e-15 85.1 57 73.7
MCO12G229 Micromonas commoda HOM05D005817 ORTHO05D007140 2.6e-14 82.8 106 38.7
Cre02.g106550 Chlamydomonas reinhardtii HOM05D005817 ORTHO05D007140 1.4e-12 77.0 100 40.0
Thhalv10005196m.g Eutrema salsugineum HOM05D005817 ORTHO05D007140 2.5e-12 76.3 52 76.9
MSTRG.601 Avicennia marina HOM05D005817 ORTHO05D007140 9.3e-12 74.3 58 63.8


User provided reference genes

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