Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0060191 Rosa chinensis HOM05D001780 ORTHO05D004373 5.7e-242 840.5 425 100.0
MD04G1037200 Malus domestica HOM05D001780 ORTHO05D004373 2.0e-178 629.4 428 75.9
QL10p047812 Quercus lobata HOM05D001780 ORTHO05D004373 1.3e-177 626.7 419 75.7
CANSAT78G0939 Cannabis sativa HOM05D001780 ORTHO05D004373 1.7e-177 626.3 419 76.1
FvH4_4g11470 Fragaria vesca HOM05D001780 ORTHO05D004373 3.2e-176 622.1 422 74.6
Lalb_Chr09g0320441 Lupinus albus HOM05D001780 ORTHO05D004373 7.1e-176 620.9 419 74.0
FAN17G0725 Fragaria x ananassa HOM05D001780 ORTHO05D004373 7.9e-175 617.5 422 73.9
Ciclev10018576m.g Citrus clementina HOM05D001780 ORTHO05D004373 1.3e-174 616.7 427 72.8
FAN07G0072 Fragaria x ananassa HOM05D001780 ORTHO05D004373 1.3e-174 616.7 422 73.9
MD09G1065200 Malus domestica HOM05D001780 ORTHO05D004373 1.8e-174 616.3 427 75.2
Lj3g0013099 Lotus japonicus HOM05D001780 ORTHO05D004373 2.3e-174 615.9 419 74.2
Sabra17G0020800 Salix brachista HOM05D001780 ORTHO05D004373 1.5e-173 613.2 427 71.9
CiPaw.01G102300 Carya illinoinensis HOM05D001780 ORTHO05D004373 1.9e-173 612.8 419 74.0
THA.LOC104803625 Tarenaya hassleriana HOM05D001780 ORTHO05D004373 4.3e-173 611.7 427 73.5
Glyma.11G094300 Glycine max HOM05D001780 ORTHO05D004373 5.6e-173 611.3 419 72.8
Ca_26060_v3 Cicer arietinum L. HOM05D001780 ORTHO05D004373 2.8e-172 609.0 419 73.0
Potri.017G033200 Populus trichocarpa HOM05D001780 ORTHO05D004373 4.8e-172 608.2 427 71.7
RcHm_v2.0_Chr4g0408181 Rosa chinensis HOM05D001780 ORTHO05D004373 6.2e-172 607.8 424 73.1
VMungo1127G1244 Vigna mungo HOM05D001780 ORTHO05D004373 1.4e-171 606.7 419 72.6
Glyma.12G020700 Glycine max HOM05D001780 ORTHO05D004373 2.4e-171 605.9 419 72.3
TPR.G13745 Trifolium pratense HOM05D001780 ORTHO05D004373 4.0e-171 605.1 419 73.0
Psat7g172640 Pisum sativum HOM05D001780 ORTHO05D004373 1.2e-170 603.6 419 72.1
Phvul.011G023400 Phaseolus vulgaris HOM05D001780 ORTHO05D004373 1.5e-170 603.2 419 72.3
Thecc.05G003300 Theobroma cacao HOM05D001780 ORTHO05D004373 1.5e-170 603.2 427 72.4
Prupe.1G186600 Prunus persica HOM05D001780 ORTHO05D004373 2.6e-170 602.4 405 77.3
arahy.Tifrunner.gnm1.ann1.05K2HA Arachis hypogaea HOM05D001780 ORTHO05D004373 9.9e-170 600.5 419 72.3
TAR362G1083 Trochodendron aralioides HOM05D001780 ORTHO05D004373 9.9e-170 600.5 419 71.1
Sed0001787 Sechium edule HOM05D001780 ORTHO05D004373 7.1e-168 594.3 427 70.5
Gohir.D01G221100 Gossypium hirsutum HOM05D001780 ORTHO05D004373 1.2e-167 593.6 427 70.7
Gorai.002G267700 Gossypium raimondii HOM05D001780 ORTHO05D004373 1.2e-167 593.6 427 70.7
Atru.chr12.1705 Acer truncatum HOM05D001780 ORTHO05D004373 1.6e-167 593.2 419 71.1
CsaV3_4G003190 Cucumis sativus L. HOM05D001780 ORTHO05D004373 1.6e-167 593.2 427 71.0
Peaxi162Scf00558g00043 Petunia axillaris HOM05D001780 ORTHO05D004373 1.0e-166 590.5 427 69.1
MELO3C017728.2 Cucumis melo HOM05D001780 ORTHO05D004373 1.3e-166 590.1 427 70.3
Actinidia34617 Actinidia chinensis HOM05D001780 ORTHO05D004373 1.8e-166 589.7 419 70.4
FAN22G0035 Fragaria x ananassa HOM05D001780 ORTHO05D004373 1.8e-166 589.7 480 65.0
Nn1g08648 Nelumbo nucifera HOM05D001780 ORTHO05D004373 1.8e-166 589.7 418 70.6
Actinidia35963 Actinidia chinensis HOM05D001780 ORTHO05D004373 8.7e-166 587.4 419 69.9
MBI18_g09771_MAGBIO Magnolia biondii HOM05D001780 ORTHO05D004373 1.1e-165 587.0 420 70.7
Dinv15122 Davidia involucrata HOM05D001780 ORTHO05D004373 1.6e-164 583.2 419 69.5
Medtr4g076850 Medicago truncatula HOM05D001780 ORTHO05D004373 3.7e-164 582.0 419 71.4
Lj6C607G11 Lonicera japonica HOM05D001780 ORTHO05D004373 8.2e-164 580.9 418 69.9
Sopen11g006930 Solanum pennellii HOM05D001780 ORTHO05D004373 1.4e-163 580.1 427 68.4
Dinv44242 Davidia involucrata HOM05D001780 ORTHO05D004373 1.8e-163 579.7 419 69.9
Atru.chr3.1583 Acer truncatum HOM05D001780 ORTHO05D004373 2.4e-163 579.3 437 68.0
Sabra07G0102600 Salix brachista HOM05D001780 ORTHO05D004373 3.1e-163 578.9 452 67.3
Aa31LG10G13700 Aethionema arabicum HOM05D001780 ORTHO05D004373 5.3e-163 578.2 419 71.1
Aqoxy7G01270 Aquilegia oxysepala HOM05D001780 ORTHO05D004373 5.3e-163 578.2 419 69.9
Solyc11g012140.2 Solanum lycopersicum HOM05D001780 ORTHO05D004373 6.9e-163 577.8 427 67.9
Oeu025915.1 Olea europaea HOM05D001780 ORTHO05D004373 9.0e-163 577.4 419 69.5
Duzib106G1771 Durio zibethinus HOM05D001780 ORTHO05D004373 1.2e-162 577.0 427 70.0
SGA_v2.0_scaffold29G12214 Striga asiatica HOM05D001780 ORTHO05D004373 1.2e-162 577.0 419 69.5
MSTRG.21338 Avicennia marina HOM05D001780 ORTHO05D004373 1.5e-162 576.6 427 69.1
Manes.04G040600 Manihot esculenta HOM05D001780 ORTHO05D004373 1.5e-162 576.6 418 69.9
PGSC0003DMG400013343 Solanum tuberosum HOM05D001780 ORTHO05D004373 1.5e-162 576.6 427 68.1
vmacro00605 Vaccinium macrocarpon HOM05D001780 ORTHO05D004373 2.0e-162 576.2 440 66.6
GSVIVG01010735001 Vitis vinifera HOM05D001780 ORTHO05D004373 2.0e-162 576.2 419 69.9
ClCG07G015560 Citrullus lanatus HOM05D001780 ORTHO05D004373 2.6e-162 575.9 428 68.9
COL.COLO4_14418 Corchorus olitorius HOM05D001780 ORTHO05D004373 5.8e-162 574.7 423 70.0
Oeu061694.1 Olea europaea HOM05D001780 ORTHO05D004373 1.3e-161 573.5 427 67.4
Cc04_g11170 Coffea canephora HOM05D001780 ORTHO05D004373 2.2e-161 572.8 419 69.0
PSO541G0190 Papaver somniferum HOM05D001780 ORTHO05D004373 3.8e-161 572.0 418 69.1
TWI63G0569 Tripterygium wilfordii HOM05D001780 ORTHO05D004373 6.5e-161 571.2 427 68.9
Nitab4.5_0000143g0350 Nicotiana tabacum HOM05D001780 ORTHO05D004373 8.4e-161 570.9 470 63.0
Dinv33217 Davidia involucrata HOM05D001780 ORTHO05D004373 1.4e-160 570.1 419 68.7
unitig_0.g306 Utricularia gibba HOM05D001780 ORTHO05D004373 1.4e-160 570.1 419 67.5
Lsat_1_v5_gn_5_77240 Lactuca sativa HOM05D001780 ORTHO05D004373 2.5e-160 569.3 419 68.3
PSO063G4644 Papaver somniferum HOM05D001780 ORTHO05D004373 3.2e-160 568.9 418 69.4
Nitab4.5_0001198g0100 Nicotiana tabacum HOM05D001780 ORTHO05D004373 7.1e-160 567.8 427 67.7
PSO675G8171 Papaver somniferum HOM05D001780 ORTHO05D004373 1.6e-159 566.6 418 68.7
PGR142G2637 Punica granatum HOM05D001780 ORTHO05D004373 2.7e-159 565.8 427 67.7
CAN.G1186.25 Capsicum annuum HOM05D001780 ORTHO05D004373 7.9e-159 564.3 427 66.5
BcaB06g27675 Brassica carinata HOM05D001780 ORTHO05D004373 1.0e-158 563.9 419 68.5
A04p14990 Brassica napus HOM05D001780 ORTHO05D004373 1.0e-158 563.9 419 68.7
Gohir.A01G231000 Gossypium hirsutum HOM05D001780 ORTHO05D004373 1.0e-158 563.9 427 68.6
Sp7g00280 Schrenkiella parvula HOM05D001780 ORTHO05D004373 1.0e-158 563.9 419 68.7
BcaC02g08915 Brassica carinata HOM05D001780 ORTHO05D004373 3.9e-158 562.0 419 68.5
C04p49170 Brassica napus HOM05D001780 ORTHO05D004373 3.9e-158 562.0 419 68.5
BolC4t26502H Brassica oleracea HOM05D001780 ORTHO05D004373 3.9e-158 562.0 419 68.5
BraA04t17141Z Brassica rapa HOM05D001780 ORTHO05D004373 3.9e-158 562.0 419 68.3
COL.COLO4_24691 Corchorus olitorius HOM05D001780 ORTHO05D004373 3.9e-158 562.0 425 68.9
EL10Ac3g05575 Beta vulgaris HOM05D001780 ORTHO05D004373 5.1e-158 561.6 427 67.0
TWI56G0090 Tripterygium wilfordii HOM05D001780 ORTHO05D004373 5.1e-158 561.6 427 67.0
Thhalv10027624m.g Eutrema salsugineum HOM05D001780 ORTHO05D004373 1.1e-157 560.5 419 68.5
AUR62015426 Chenopodium quinoa HOM05D001780 ORTHO05D004373 1.5e-157 560.1 427 67.0
arahy.Tifrunner.gnm1.ann1.AHZV2Y Arachis hypogaea HOM05D001780 ORTHO05D004373 2.5e-157 559.3 412 69.9
BcaNung01700 Brassica carinata HOM05D001780 ORTHO05D004373 9.7e-157 557.4 424 67.9
HanXRQChr10g0310431 Helianthus annuus HOM05D001780 ORTHO05D004373 9.7e-157 557.4 418 66.7
Hund03144 Selenicereus undatus HOM05D001780 ORTHO05D004373 9.7e-157 557.4 419 68.5
CARHR218340 Cardamine hirsuta HOM05D001780 ORTHO05D004373 1.6e-156 556.6 429 67.6
AUR62002268 Chenopodium quinoa HOM05D001780 ORTHO05D004373 2.8e-156 555.8 427 66.3
DCAR_019070 Daucus carota HOM05D001780 ORTHO05D004373 2.8e-156 555.8 420 67.6
Sc20g0004730 Simmondsia chinensis HOM05D001780 ORTHO05D004373 2.8e-156 555.8 418 67.7
BraA03t14408Z Brassica rapa HOM05D001780 ORTHO05D004373 3.7e-156 555.4 420 68.3
Migut.D00680 Erythranthe guttata HOM05D001780 ORTHO05D004373 1.4e-155 553.5 419 65.6
C07p51730 Brassica napus HOM05D001780 ORTHO05D004373 2.4e-155 552.7 424 67.2
A03p53410 Brassica napus HOM05D001780 ORTHO05D004373 5.3e-155 551.6 420 67.9
Cfa015768 Carpinus fangiana HOM05D001780 ORTHO05D004373 6.9e-155 551.2 419 68.7
CDE05G1969 Ceratophyllum demersum HOM05D001780 ORTHO05D004373 9.0e-155 550.8 419 66.1
ATR0789G163 Amborella trichopoda HOM05D001780 ORTHO05D004373 2.6e-154 549.3 419 67.3
BcaNung00801 Brassica carinata HOM05D001780 ORTHO05D004373 2.6e-154 549.3 420 67.4
AL7G50050 Arabidopsis lyrata HOM05D001780 ORTHO05D004373 3.4e-154 548.9 420 67.4
Haze_00734 Corylus avellana HOM05D001780 ORTHO05D004373 7.6e-154 547.7 399 72.2
Rhsim05G0075700 Rhododendron simsii HOM05D001780 ORTHO05D004373 3.2e-152 542.3 430 65.1
Eucgr.H00404 Eucalyptus grandis HOM05D001780 ORTHO05D004373 7.2e-152 541.2 397 69.5
BcaC08g43402 Brassica carinata HOM05D001780 ORTHO05D004373 4.6e-151 538.5 423 66.7
C07p51720 Brassica napus HOM05D001780 ORTHO05D004373 4.6e-151 538.5 452 63.3
BolC6t35859H Brassica oleracea HOM05D001780 ORTHO05D004373 1.0e-150 537.3 423 66.4
Atru.chr3.1561 Acer truncatum HOM05D001780 ORTHO05D004373 8.8e-150 534.3 427 65.3
C06p07700 Brassica napus HOM05D001780 ORTHO05D004373 1.1e-149 533.9 423 66.2
Carub.0006s2892 Capsella rubella HOM05D001780 ORTHO05D004373 6.3e-148 528.1 429 64.6
AT4G10320 Arabidopsis thaliana HOM05D001780 ORTHO05D004373 4.1e-147 525.4 429 64.8
Zm00001eb386920 Zea mays HOM05D001780 ORTHO05D004373 6.9e-147 524.6 426 63.1
Zm00001eb275200 Zea mays HOM05D001780 ORTHO05D004373 1.5e-146 523.5 426 62.7
Lsat_1_v5_gn_5_76141 Lactuca sativa HOM05D001780 ORTHO05D004373 5.9e-146 521.5 418 62.7
ECA234G4143 Erigeron canadensis HOM05D001780 ORTHO05D004373 1.7e-145 520.0 418 62.7
Mapoly0045s0031 Marchantia polymorpha HOM05D001780 ORTHO05D004373 2.9e-145 519.2 429 62.9
SEGI_14552 Sequoiadendron giganteum HOM05D001780 ORTHO05D004373 2.9e-145 519.2 398 66.3
COL.COLO4_09454 Corchorus olitorius HOM05D001780 ORTHO05D004373 7.2e-144 514.6 437 64.5
AL6G44170 Arabidopsis lyrata HOM05D001780 ORTHO05D004373 3.6e-143 512.3 429 62.7
BolC7t45663H Brassica oleracea HOM05D001780 ORTHO05D004373 7.9e-143 511.1 444 62.2
BcaNung01699 Brassica carinata HOM05D001780 ORTHO05D004373 1.1e-139 500.7 424 63.0
AagrBONN_evm.TU.Sc2ySwM_362.2885 Anthoceros agrestis HOM05D001780 ORTHO05D004373 2.4e-139 499.6 432 59.7
Pp3c16_16950 Physcomitrium patens HOM05D001780 ORTHO05D004373 3.2e-136 489.2 423 58.6
arahy.Tifrunner.gnm1.ann1.NNH8AZ Arachis hypogaea HOM05D001780 ORTHO05D004373 1.0e-134 484.2 426 59.4
FAN17G1275 Fragaria x ananassa HOM05D001780 ORTHO05D004373 8.8e-134 481.1 328 75.0
SMO200G0022 Selaginella moellendorffii HOM05D001780 ORTHO05D004373 7.2e-128 461.5 414 57.2
CBR_g17670 Chara braunii HOM05D001780 ORTHO05D004373 8.2e-124 448.0 435 54.7
Carub.0003s2335 Capsella rubella HOM05D001780 ORTHO05D004373 2.2e-121 439.9 432 54.9
Cpa.g.sc32.1 Carica papaya HOM05D001780 ORTHO05D004373 1.3e-116 424.1 294 74.5
Cre16.g651750 Chlamydomonas reinhardtii HOM05D001780 ORTHO05D004373 2.9e-105 386.3 415 49.9
MCO01G256 Micromonas commoda HOM05D001780 ORTHO05D004373 3.0e-97 359.8 436 45.6
PRCOL_00001024 Prasinoderma coloniale HOM05D001780 ORTHO05D004373 3.4e-93 346.3 429 46.2
HPP92_012341 Vanilla planifolia HOM05D001780 ORTHO05D004373 1.4e-78 297.7 222 67.1
SEGI_27348 Sequoiadendron giganteum HOM05D001780 ORTHO05D004373 1.2e-77 294.7 213 71.4
FAN17G1933 Fragaria x ananassa HOM05D001780 ORTHO05D004373 5.1e-73 279.3 182 77.5
Haze_26114 Corylus avellana HOM05D001780 ORTHO05D004373 1.2e-61 241.5 404 37.1
Rhsim05G0110000 Rhododendron simsii HOM05D001780 ORTHO05D004373 8.7e-57 225.3 226 56.6
AagrBONN_evm.TU.Sc2ySwM_368.2029 Anthoceros agrestis HOM05D001780 ORTHO05D004373 1.0e-41 175.3 154 60.4
Pp3c5_8940 Physcomitrium patens HOM05D001780 ORTHO05D004373 7.4e-40 169.1 185 51.4
HPP92_012342 Vanilla planifolia HOM05D001780 ORTHO05D004373 1.1e-38 165.2 168 50.6
Hma1.2p1_0597F.1_g186560 Hydrangea macrophylla HOM05D001780 ORTHO05D004373 2.5e-35 154.1 119 62.2
Os06g0645400 Oryza sativa ssp. japonica HOM05D001780 ORTHO05D004373 1.2e-34 151.8 119 68.1
ECA247G3932 Erigeron canadensis HOM05D001780 ORTHO05D004373 1.5e-29 134.8 115 60.9
BcaC06g36784 Brassica carinata HOM05D001780 ORTHO05D004373 4.5e-29 133.3 156 51.3
Aqoxy2G00702 Aquilegia oxysepala HOM05D001780 ORTHO05D021376 1.8e-25 121.3 127 54.3
CSS0048825 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 6.7e-25 119.4 85 70.6
Lsat_1_v5_gn_5_76161 Lactuca sativa HOM05D001780 ORTHO05D004373 9.7e-24 115.5 111 53.2
HPP92_012311 Vanilla planifolia HOM05D001780 ORTHO05D431603 3.2e-19 100.5 229 31.9
AL1G56910 Arabidopsis lyrata HOM05D003724 ORTHO05D004367 6.7e-17 92.8 74 67.6
SMO338G0005 Selaginella moellendorffii HOM05D001780 ORTHO05D004373 2.0e-16 91.3 72 66.7
TAR633G2511 Trochodendron aralioides HOM05D001780 ORTHO05D004373 2.0e-16 91.3 98 48.0
Rhsim05G0100100 Rhododendron simsii HOM05D034201 ORTHO05D021376 2.6e-13 80.9 85 51.8
FvH4_3g27323 Fragaria vesca HOM05D010408 ORTHO05D015232 1.2e-10 72.0 81 50.6
FAN28G1961 Fragaria x ananassa HOM05D001780 ORTHO05D015232 2.1e-10 71.2 44 72.7
ECA248G0534 Erigeron canadensis HOM05D003043 ORTHO05D003652 5.2e-09 66.6 86 41.9
Psat4g011920 Pisum sativum HOM05D002621 ORTHO05D002929 5.2e-09 66.6 49 57.1
FAN26G2232 Fragaria x ananassa HOM05D001780 ORTHO05D015232 2.0e-08 64.7 67 49.3
Lsat_1_v5_gn_7_78781 Lactuca sativa HOM05D004261 ORTHO05D005642 7.5e-08 62.8 44 72.7
FAN06G3152 Fragaria x ananassa HOM05D010408 ORTHO05D015232 2.8e-07 60.8 78 48.7
Gohir.A11G216950 Gossypium hirsutum HOM05D001780 ORTHO05D004373 2.8e-07 60.8 38 73.7
FAN04G1188 Fragaria x ananassa HOM05D001780 ORTHO05D004373 1.4e-06 58.5 36 75.0
FvH4_7g06406 Fragaria vesca HOM05D001780 ORTHO05D015232 2.4e-06 57.8 72 48.6
FAN19G1910 Fragaria x ananassa HOM05D010408 ORTHO05D015232 3.1e-06 57.4 48 56.2


User provided reference genes

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