Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0051731 Rosa chinensis HOM05D002303 ORTHO05D020332 1.4e-90 336.3 166 100.0
MD13G1091700 Malus domestica HOM05D002303 ORTHO05D006504 8.7e-37 157.5 237 48.1
Prupe.1G254100 Prunus persica HOM05D002303 ORTHO05D006504 1.9e-36 156.4 235 48.9
MD16G1092300 Malus domestica HOM05D002303 ORTHO05D006504 2.1e-35 152.9 235 48.5
QL03p061244 Quercus lobata HOM05D002303 ORTHO05D006504 4.0e-34 148.7 236 45.8
RcHm_v2.0_Chr4g0443891 Rosa chinensis HOM05D002303 ORTHO05D006504 7.6e-33 144.4 233 46.8
ClCG05G025310 Citrullus lanatus HOM05D002303 ORTHO05D006504 8.4e-32 141.0 234 44.4
CsaV3_5G031590 Cucumis sativus L. HOM05D002303 ORTHO05D006504 1.9e-31 139.8 234 45.3
MELO3C011999.2 Cucumis melo HOM05D002303 ORTHO05D006504 2.5e-31 139.4 234 44.9
FvH4_4g34510 Fragaria vesca HOM05D002303 ORTHO05D006504 4.2e-31 138.7 236 45.8
Sed0001575 Sechium edule HOM05D002303 ORTHO05D006504 5.5e-31 138.3 236 44.5
FAN12G1541 Fragaria x ananassa HOM05D002303 ORTHO05D006504 1.2e-30 137.1 236 45.3
QL07p042264 Quercus lobata HOM05D002303 ORTHO05D006504 1.2e-30 137.1 237 44.3
Haze_12176 Corylus avellana HOM05D002303 ORTHO05D006504 1.6e-30 136.7 235 45.5
Duzib168G1309 Durio zibethinus HOM05D002303 ORTHO05D006504 2.1e-30 136.3 235 43.8
Thecc.09G187500 Theobroma cacao HOM05D002303 ORTHO05D006504 2.1e-30 136.3 235 43.8
Cfa009142 Carpinus fangiana HOM05D002303 ORTHO05D006504 3.5e-30 135.6 235 44.7
COL.COLO4_06925 Corchorus olitorius HOM05D002303 ORTHO05D006504 4.6e-30 135.2 233 43.3
Gorai.001G197400 Gossypium raimondii HOM05D002303 ORTHO05D006504 1.8e-29 133.3 234 43.2
CANSAT64G0961 Cannabis sativa HOM05D002303 ORTHO05D006504 5.1e-29 131.7 237 43.0
Dinv24860 Davidia involucrata HOM05D002303 ORTHO05D006504 5.1e-29 131.7 245 41.2
Gohir.D07G176600 Gossypium hirsutum HOM05D002303 ORTHO05D006504 5.1e-29 131.7 234 42.7
TAR374G1747 Trochodendron aralioides HOM05D002303 ORTHO05D006504 6.7e-29 131.3 237 38.8
FAN07G1287 Fragaria x ananassa HOM05D002303 ORTHO05D006504 8.7e-29 131.0 235 44.3
TAR680G0002 Trochodendron aralioides HOM05D002303 ORTHO05D006504 8.7e-29 131.0 179 45.3
Gohir.D05G002200 Gossypium hirsutum HOM05D002303 ORTHO05D006504 1.9e-28 129.8 224 43.3
Gorai.009G002100 Gossypium raimondii HOM05D002303 ORTHO05D006504 1.9e-28 129.8 224 43.3
Lj3A1052T30 Lonicera japonica HOM05D002303 ORTHO05D006504 1.9e-28 129.8 241 39.0
Atru.chr11.2018 Acer truncatum HOM05D002303 ORTHO05D006504 9.6e-28 127.5 185 45.9
Aqoxy3G02980 Aquilegia oxysepala HOM05D002303 ORTHO05D006504 1.6e-27 126.7 236 39.0
Manes.12G029100 Manihot esculenta HOM05D002303 ORTHO05D006504 1.6e-27 126.7 236 42.8
Lsat_1_v5_gn_9_45920 Lactuca sativa HOM05D002303 ORTHO05D006504 2.8e-27 125.9 237 40.5
CDE10G0655 Ceratophyllum demersum HOM05D002303 ORTHO05D006504 3.7e-27 125.6 231 40.3
Gohir.A05G001900 Gossypium hirsutum HOM05D002303 ORTHO05D006504 3.7e-27 125.6 224 42.4
PGR102G1063 Punica granatum HOM05D002303 ORTHO05D006504 3.7e-27 125.6 235 40.9
Gohir.A07G170300 Gossypium hirsutum HOM05D002303 ORTHO05D006504 4.8e-27 125.2 233 39.9
HanXRQChr15g0490111 Helianthus annuus HOM05D002303 ORTHO05D006504 4.8e-27 125.2 186 46.2
Ciclev10031042m.g Citrus clementina HOM05D002303 ORTHO05D006504 1.1e-26 124.0 232 39.7
vmacro16253 Vaccinium macrocarpon HOM05D002303 ORTHO05D006504 1.1e-26 124.0 245 40.4
Ca_09780_v3 Cicer arietinum L. HOM05D002303 ORTHO05D006504 1.4e-26 123.6 231 40.7
Potri.008G172800 Populus trichocarpa HOM05D002303 ORTHO05D006504 2.4e-26 122.9 233 41.6
Sabra08G0132000 Salix brachista HOM05D002303 ORTHO05D006504 2.4e-26 122.9 195 45.6
CSS0022544 Camellia sinensis var. sinensis HOM05D002303 ORTHO05D006504 3.1e-26 122.5 215 40.0
Nitab4.5_0003676g0010 Nicotiana tabacum HOM05D002303 ORTHO05D006504 3.1e-26 122.5 231 39.0
Hma1.2p1_0867F.1_g230190 Hydrangea macrophylla HOM05D002303 ORTHO05D006504 4.0e-26 122.1 220 40.9
Potri.010G064600 Populus trichocarpa HOM05D002303 ORTHO05D006504 4.0e-26 122.1 230 43.5
Ciclev10019296m.g Citrus clementina HOM05D002303 ORTHO05D006504 5.3e-26 121.7 234 38.9
ATR0810G196 Amborella trichopoda HOM05D002303 ORTHO05D006504 9.0e-26 120.9 233 38.6
Medtr1g072740 Medicago truncatula HOM05D002303 ORTHO05D006504 1.2e-25 120.6 234 41.5
ATR0810G235 Amborella trichopoda HOM05D002303 ORTHO05D006504 1.5e-25 120.2 233 38.6
Lalb_Chr02g0150771 Lupinus albus HOM05D002303 ORTHO05D006504 1.5e-25 120.2 236 41.5
PGSC0003DMG400022364 Solanum tuberosum HOM05D002303 ORTHO05D006504 1.5e-25 120.2 232 39.2
Lj5g0024759 Lotus japonicus HOM05D002303 ORTHO05D006504 2.6e-25 119.4 184 46.7
TWI36G0505 Tripterygium wilfordii HOM05D002303 ORTHO05D006504 2.6e-25 119.4 233 39.1
Medtr4g102520 Medicago truncatula HOM05D002303 ORTHO05D006504 3.4e-25 119.0 234 41.0
Nitab4.5_0001170g0230 Nicotiana tabacum HOM05D002303 ORTHO05D006504 3.4e-25 119.0 231 38.5
DCAR_007090 Daucus carota HOM05D002303 ORTHO05D006504 5.8e-25 118.2 231 38.1
Hma1.2p1_0867F.1_g230200 Hydrangea macrophylla HOM05D002303 ORTHO05D006504 7.6e-25 117.9 207 41.1
Peaxi162Scf00527g00063 Petunia axillaris HOM05D002303 ORTHO05D006504 7.6e-25 117.9 229 39.7
ECA246G1022 Erigeron canadensis HOM05D002303 ORTHO05D006504 1.0e-24 117.5 206 42.2
SalBow2G0957 Salvia bowleyana HOM05D002303 ORTHO05D006504 1.3e-24 117.1 180 46.1
Nn4g22801 Nelumbo nucifera HOM05D002303 ORTHO05D006504 1.7e-24 116.7 239 38.5
SEGI_17343 Sequoiadendron giganteum HOM05D002303 ORTHO05D006504 1.7e-24 116.7 237 40.1
Migut.L01412 Erythranthe guttata HOM05D002303 ORTHO05D006504 2.2e-24 116.3 184 43.5
Glyma.10G192200 Glycine max HOM05D002303 ORTHO05D006504 2.2e-24 116.3 235 41.3
Glyma.20G198200 Glycine max HOM05D002303 ORTHO05D006504 2.2e-24 116.3 229 41.5
unitig_26.g10342 Utricularia gibba HOM05D002303 ORTHO05D006504 2.2e-24 116.3 184 42.4
Cpa.g.sc292.8 Carica papaya HOM05D002303 ORTHO05D006504 2.9e-24 115.9 169 43.8
MBI03_g10297_MAGBIO Magnolia biondii HOM05D002303 ORTHO05D006504 2.9e-24 115.9 154 48.1
CARHR010740 Cardamine hirsuta HOM05D002303 ORTHO05D006504 3.8e-24 115.5 230 39.1
Cc00_g31710 Coffea canephora HOM05D002303 ORTHO05D006504 3.8e-24 115.5 243 38.7
arahy.Tifrunner.gnm1.ann1.5RAP3T Arachis hypogaea HOM05D002303 ORTHO05D006504 5.0e-24 115.2 232 41.4
MSTRG.7897 Avicennia marina HOM05D002303 ORTHO05D006504 5.0e-24 115.2 191 44.5
Oeu003451.1 Olea europaea HOM05D002303 ORTHO05D006504 5.0e-24 115.2 240 38.3
SGA_v2.0_scaffold165G38248 Striga asiatica HOM05D002303 ORTHO05D006504 6.5e-24 114.8 233 39.1
Actinidia15045 Actinidia chinensis HOM05D002303 ORTHO05D006504 8.4e-24 114.4 230 38.3
CDE10G0556 Ceratophyllum demersum HOM05D002303 ORTHO05D006504 8.4e-24 114.4 203 41.4
Sp1g09240 Schrenkiella parvula HOM05D002303 ORTHO05D006504 8.4e-24 114.4 230 38.7
Thhalv10007215m.g Eutrema salsugineum HOM05D002303 ORTHO05D006504 1.4e-23 113.6 230 38.3
MBI04_g22061_MAGBIO Magnolia biondii HOM05D002303 ORTHO05D006504 1.4e-23 113.6 197 41.6
Sc04g0009110 Simmondsia chinensis HOM05D002303 ORTHO05D006504 1.4e-23 113.6 242 38.4
Psat6g141280 Pisum sativum HOM05D002303 ORTHO05D006504 1.9e-23 113.2 171 46.8
VMungo0720G0741 Vigna mungo HOM05D002303 ORTHO05D006504 1.9e-23 113.2 229 38.4
Aa31LG1G4340 Aethionema arabicum HOM05D002303 ORTHO05D006504 4.2e-23 112.1 230 39.6
Rhsim07G0188400 Rhododendron simsii HOM05D002303 ORTHO05D006504 4.2e-23 112.1 225 37.3
Sed0003805 Sechium edule HOM05D002303 ORTHO05D006504 5.5e-23 111.7 207 38.6
TPR.G18556 Trifolium pratense HOM05D002303 ORTHO05D006504 7.1e-23 111.3 236 37.7
Solyc02g078970.4 Solanum lycopersicum HOM05D002303 ORTHO05D006504 2.1e-22 109.8 231 37.2
Sopen02g023780 Solanum pennellii HOM05D002303 ORTHO05D006504 2.1e-22 109.8 232 37.1
Carub.0001s1002 Capsella rubella HOM05D002303 ORTHO05D006504 3.5e-22 109.0 230 38.3
Cc01_g07870 Coffea canephora HOM05D002303 ORTHO05D006504 3.5e-22 109.0 147 49.0
AL1G21402 Arabidopsis lyrata HOM05D002303 ORTHO05D006504 4.6e-22 108.6 217 40.1
A06p07370 Brassica napus HOM05D002303 ORTHO05D006504 4.6e-22 108.6 225 38.2
BraA06t23941Z Brassica rapa HOM05D002303 ORTHO05D006504 4.6e-22 108.6 225 38.2
Phvul.007G134200 Phaseolus vulgaris HOM05D002303 ORTHO05D006504 4.6e-22 108.6 236 36.4
CiPaw.06G072200 Carya illinoinensis HOM05D002303 ORTHO05D006504 1.0e-21 107.5 169 44.4
arahy.Tifrunner.gnm1.ann1.FDC534 Arachis hypogaea HOM05D002303 ORTHO05D006504 1.3e-21 107.1 232 39.2
BcaC05g24865 Brassica carinata HOM05D002303 ORTHO05D006504 1.8e-21 106.7 178 42.7
BolC5t29633H Brassica oleracea HOM05D002303 ORTHO05D006504 1.8e-21 106.7 178 42.7
C05p08850 Brassica napus HOM05D002303 ORTHO05D006504 2.3e-21 106.3 178 42.7
SGA_v2.0_scaffold8G04222 Striga asiatica HOM05D002303 ORTHO05D006504 2.3e-21 106.3 235 35.3
BcaC05g24944 Brassica carinata HOM05D002303 ORTHO05D006504 3.9e-21 105.5 197 41.1
Mapoly0001s0085 Marchantia polymorpha HOM05D002303 ORTHO05D006504 3.9e-21 105.5 215 38.1
PSO063G5744 Papaver somniferum HOM05D002303 ORTHO05D006504 6.7e-21 104.8 233 36.9
PSO832G3043 Papaver somniferum HOM05D002303 ORTHO05D006504 6.7e-21 104.8 233 36.9
Eucgr.B03345 Eucalyptus grandis HOM05D002303 ORTHO05D006504 1.1e-20 104.0 237 39.2
Ah.03g132680 Amaranthus hybridus HOM05D002303 ORTHO05D006504 1.5e-20 103.6 233 37.3
TAR680G0003 Trochodendron aralioides HOM05D002303 ORTHO05D020332 1.5e-20 103.6 147 44.9
PSO782G3482 Papaver somniferum HOM05D002303 ORTHO05D006504 1.9e-20 103.2 233 34.8
THA.LOC104823641 Tarenaya hassleriana HOM05D002303 ORTHO05D006504 1.9e-20 103.2 145 46.2
AT1G10580 Arabidopsis thaliana HOM05D002303 ORTHO05D006504 4.3e-20 102.1 230 36.1
HPP92_008340 Vanilla planifolia HOM05D002303 ORTHO05D006504 2.8e-19 99.4 198 39.4
TWI18G0905 Tripterygium wilfordii HOM05D002303 ORTHO05D006504 8.2e-19 97.8 234 35.0
Hund05993 Selenicereus undatus HOM05D002303 ORTHO05D006504 1.4e-18 97.1 231 35.1
EL10Ac6g13671 Beta vulgaris HOM05D002303 ORTHO05D006504 4.1e-18 95.5 161 42.2
Oeu044823.1 Olea europaea HOM05D002303 ORTHO05D006504 5.3e-18 95.1 120 47.5
Pp3c5_27650 Physcomitrium patens HOM05D002303 ORTHO05D006504 6.9e-18 94.7 207 36.7
Prupe.7G165100 Prunus persica HOM05D002303 ORTHO05D020332 6.9e-18 94.7 80 63.8
Os03g0397500 Oryza sativa ssp. japonica HOM05D002303 ORTHO05D006504 4.5e-17 92.0 222 40.1
AUR62005376 Chenopodium quinoa HOM05D002303 ORTHO05D006504 5.9e-17 91.7 155 40.6
AUR62014039 Chenopodium quinoa HOM05D002303 ORTHO05D006504 5.9e-17 91.7 155 41.3
Zm00001eb019350 Zea mays HOM05D002303 ORTHO05D006504 3.2e-15 85.9 220 35.9
CARHR005850 Cardamine hirsuta HOM05D002303 ORTHO05D020332 5.5e-15 85.1 154 39.0
QL04p079730 Quercus lobata HOM05D002303 ORTHO05D006504 2.1e-14 83.2 80 57.5
Zm00001eb392750 Zea mays HOM05D002303 ORTHO05D006504 2.1e-14 83.2 220 35.5
AagrBONN_evm.TU.Sc2ySwM_228.161 Anthoceros agrestis HOM05D002303 ORTHO05D006504 4.6e-14 82.0 170 38.2
SEGI_25226 Sequoiadendron giganteum HOM05D002303 ORTHO05D020332 9.7e-12 74.3 82 48.8
CSS0020077 Camellia sinensis var. sinensis HOM05D002303 ORTHO05D006504 1.7e-11 73.6 164 35.4
SMO361G0390 Selaginella moellendorffii HOM05D002303 ORTHO05D006504 4.8e-11 72.0 157 33.8
Sp4g02400 Schrenkiella parvula HOM05D002303 ORTHO05D006504 2.5e-07 59.7 185 33.0
CBR_g42136 Chara braunii HOM05D002303 ORTHO05D006504 3.2e-07 59.3 145 32.4
CSS0001865 Camellia sinensis var. sinensis HOM05D002303 ORTHO05D006504 2.1e-06 56.6 164 31.7


User provided reference genes

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