Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0049931 Rosa chinensis HOM05D005598 ORTHO05D006587 2.4e-170 602.1 296 100.0
FAN11G2626 Fragaria x ananassa HOM05D005598 ORTHO05D006587 2.3e-157 558.9 296 92.6
FvH4_3g27560 Fragaria vesca HOM05D005598 ORTHO05D006587 7.4e-156 553.9 296 91.9
FAN16G3025 Fragaria x ananassa HOM05D005598 ORTHO05D006587 2.8e-155 552.0 296 91.6
MD02G1261600 Malus domestica HOM05D005598 ORTHO05D006587 1.7e-152 542.7 300 88.7
QL04p046731 Quercus lobata HOM05D005598 ORTHO05D006587 1.1e-146 523.5 299 83.9
CiPaw.13G040600 Carya illinoinensis HOM05D005598 ORTHO05D006587 1.8e-146 522.7 298 83.9
TAR636G1340 Trochodendron aralioides HOM05D005598 ORTHO05D006587 3.1e-146 521.9 298 85.6
GSVIVG01010722001 Vitis vinifera HOM05D005598 ORTHO05D006587 5.9e-145 517.7 298 84.9
Rhsim09G0141700 Rhododendron simsii HOM05D005598 ORTHO05D006587 1.3e-144 516.5 298 84.2
Haze_03295 Corylus avellana HOM05D005598 ORTHO05D006587 1.7e-144 516.2 309 81.6
CSS0000091 Camellia sinensis var. sinensis HOM05D005598 ORTHO05D006587 2.5e-143 512.3 298 82.9
Eucgr.G02689 Eucalyptus grandis HOM05D005598 ORTHO05D006587 6.8e-141 504.2 298 82.2
PGR142G4231 Punica granatum HOM05D005598 ORTHO05D006587 8.8e-141 503.8 302 81.8
Lj2C33T4 Lonicera japonica HOM05D005598 ORTHO05D006587 1.5e-140 503.1 298 82.9
Gorai.009G304000 Gossypium raimondii HOM05D005598 ORTHO05D006587 3.4e-140 501.9 299 81.3
Duzib128G1802 Durio zibethinus HOM05D005598 ORTHO05D006587 4.4e-140 501.5 298 80.5
Nn6g34854 Nelumbo nucifera HOM05D005598 ORTHO05D006587 4.4e-140 501.5 299 81.9
Potri.008G019800 Populus trichocarpa HOM05D005598 ORTHO05D006587 9.8e-140 500.4 298 82.2
Sabra08G0013100 Salix brachista HOM05D005598 ORTHO05D006587 9.8e-140 500.4 299 82.9
Gohir.A05G287700 Gossypium hirsutum HOM05D005598 ORTHO05D006587 1.3e-139 500.0 299 80.9
Gohir.D05G288900 Gossypium hirsutum HOM05D005598 ORTHO05D006587 1.7e-139 499.6 299 80.6
Hund06785 Selenicereus undatus HOM05D005598 ORTHO05D006587 2.2e-139 499.2 299 81.6
TWI38G0756 Tripterygium wilfordii HOM05D005598 ORTHO05D006587 6.3e-139 497.7 298 81.5
CANSAT56G2222 Cannabis sativa HOM05D005598 ORTHO05D006587 1.1e-138 496.9 296 81.4
CsaV3_4G003460 Cucumis sativus L. HOM05D005598 ORTHO05D006587 3.1e-138 495.4 298 79.9
Atru.chr12.1043 Acer truncatum HOM05D005598 ORTHO05D006587 1.6e-137 493.0 300 80.3
MELO3C017716.2 Cucumis melo HOM05D005598 ORTHO05D006587 4.5e-137 491.5 298 79.5
Cc02_g09610 Coffea canephora HOM05D005598 ORTHO05D006587 1.0e-136 490.3 298 79.5
Sed0022725 Sechium edule HOM05D005598 ORTHO05D006587 1.7e-136 489.6 298 79.5
Ciclev10016103m.g Citrus clementina HOM05D005598 ORTHO05D006587 5.0e-136 488.0 298 77.9
TPR.G2473 Trifolium pratense HOM05D005598 ORTHO05D006587 5.0e-136 488.0 297 77.4
ClCG07G015650 Citrullus lanatus HOM05D005598 ORTHO05D006587 1.9e-135 486.1 329 73.9
CDE08G1414 Ceratophyllum demersum HOM05D005598 ORTHO05D006587 3.2e-135 485.3 298 78.2
EL10Ac4g08688 Beta vulgaris HOM05D005598 ORTHO05D006587 7.2e-135 484.2 299 77.6
Ca_25662_v3 Cicer arietinum L. HOM05D005598 ORTHO05D006587 7.2e-135 484.2 299 78.3
Sc09g0005330 Simmondsia chinensis HOM05D005598 ORTHO05D006587 7.2e-135 484.2 298 78.2
AUR62042081 Chenopodium quinoa HOM05D005598 ORTHO05D006587 9.4e-135 483.8 293 78.5
MSTRG.23901 Avicennia marina HOM05D005598 ORTHO05D006587 1.6e-134 483.0 300 78.7
Thecc.10G109100 Theobroma cacao HOM05D005598 ORTHO05D006587 1.6e-134 483.0 300 78.7
ATR0820G296 Amborella trichopoda HOM05D005598 ORTHO05D006587 8.0e-134 480.7 298 78.5
Aqoxy4G02744 Aquilegia oxysepala HOM05D005598 ORTHO05D006587 1.4e-133 479.9 301 79.4
Oeu024809.1 Olea europaea HOM05D005598 ORTHO05D006587 4.0e-133 478.4 331 71.9
Lj5g0018811 Lotus japonicus HOM05D005598 ORTHO05D006587 5.2e-133 478.0 298 77.2
vmacro10312 Vaccinium macrocarpon HOM05D005598 ORTHO05D006587 5.2e-133 478.0 298 77.9
arahy.Tifrunner.gnm1.ann1.8DLZ0X Arachis hypogaea HOM05D005598 ORTHO05D006587 8.8e-133 477.2 297 75.4
DCAR_006354 Daucus carota HOM05D005598 ORTHO05D006587 2.0e-132 476.1 298 78.2
Manes.10G062100 Manihot esculenta HOM05D005598 ORTHO05D006587 2.0e-132 476.1 279 82.8
Phvul.007G022800 Phaseolus vulgaris HOM05D005598 ORTHO05D006587 2.0e-132 476.1 301 78.1
HanXRQChr11g0342091 Helianthus annuus HOM05D005598 ORTHO05D006587 2.6e-132 475.7 298 77.2
arahy.Tifrunner.gnm1.ann1.L8YGTT Arachis hypogaea HOM05D005598 ORTHO05D006587 3.4e-132 475.3 298 75.2
VMungo0720G0111 Vigna mungo HOM05D005598 ORTHO05D006587 5.7e-132 474.6 300 77.3
Medtr1g111980 Medicago truncatula HOM05D005598 ORTHO05D006587 7.5e-132 474.2 299 76.6
PSO339G6152 Papaver somniferum HOM05D005598 ORTHO05D006587 2.2e-131 472.6 300 76.3
Migut.F01603 Erythranthe guttata HOM05D005598 ORTHO05D006587 2.8e-131 472.2 299 77.9
Peaxi162Scf00173g00110 Petunia axillaris HOM05D005598 ORTHO05D006587 3.7e-131 471.9 298 77.5
Nitab4.5_0003590g0030 Nicotiana tabacum HOM05D005598 ORTHO05D006587 4.9e-131 471.5 298 77.9
Sopen11g002760 Solanum pennellii HOM05D005598 ORTHO05D006587 4.9e-131 471.5 298 77.9
THA.LOC104824207 Tarenaya hassleriana HOM05D005598 ORTHO05D006587 6.3e-131 471.1 301 76.1
Lalb_Chr02g0146251 Lupinus albus HOM05D005598 ORTHO05D006587 1.1e-130 470.3 300 77.3
Solyc11g006860.2 Solanum lycopersicum HOM05D005598 ORTHO05D006587 1.1e-130 470.3 298 77.9
HPP92_000055 Vanilla planifolia HOM05D005598 ORTHO05D006587 3.1e-130 468.8 297 76.8
SalBow6G5745 Salvia bowleyana HOM05D005598 ORTHO05D006587 4.1e-130 468.4 301 76.7
PGSC0003DMG400023970 Solanum tuberosum HOM05D005598 ORTHO05D006587 2.7e-129 465.7 298 76.8
CAN.G645.19 Capsicum annuum HOM05D005598 ORTHO05D006587 5.9e-129 464.5 297 76.4
COL.COLO4_38547 Corchorus olitorius HOM05D005598 ORTHO05D006587 1.7e-128 463.0 282 78.4
Lsat_1_v5_gn_2_104400 Lactuca sativa HOM05D005598 ORTHO05D006587 1.5e-127 459.9 293 75.8
Prupe.2G069600 Prunus persica HOM05D005598 ORTHO05D006587 5.6e-127 458.0 237 92.8
Sp4g04110 Schrenkiella parvula HOM05D005598 ORTHO05D006587 6.1e-126 454.5 296 73.3
Nitab4.5_0002586g0090 Nicotiana tabacum HOM05D005598 ORTHO05D006587 1.0e-125 453.8 333 70.6
ECA238G1649 Erigeron canadensis HOM05D005598 ORTHO05D006587 1.8e-125 453.0 300 74.0
CARHR116600 Cardamine hirsuta HOM05D005598 ORTHO05D006587 6.8e-125 451.1 296 72.3
Carub.0004s0468 Capsella rubella HOM05D005598 ORTHO05D006587 8.9e-125 450.7 297 71.7
Dinv10930 Davidia involucrata HOM05D005598 ORTHO05D006587 1.5e-124 449.9 239 89.5
BcaC02g08374 Brassica carinata HOM05D005598 ORTHO05D006587 2.0e-124 449.5 291 73.5
C04p55060 Brassica napus HOM05D005598 ORTHO05D006587 2.0e-124 449.5 291 73.5
BolC4t27046H Brassica oleracea HOM05D005598 ORTHO05D006587 2.0e-124 449.5 291 73.5
BraA04t17544Z Brassica rapa HOM05D005598 ORTHO05D006587 2.0e-124 449.5 291 73.5
A04p19500 Brassica napus HOM05D005598 ORTHO05D006587 3.4e-124 448.7 291 73.2
TWI63G1098 Tripterygium wilfordii HOM05D005598 ORTHO05D006587 5.7e-124 448.0 298 76.5
Aa31LG7G12150 Aethionema arabicum HOM05D005598 ORTHO05D006587 7.5e-124 447.6 297 72.7
BcaB06g28035 Brassica carinata HOM05D005598 ORTHO05D006587 7.5e-124 447.6 291 73.2
AT2G25100 Arabidopsis thaliana HOM05D005598 ORTHO05D006587 1.7e-123 446.4 297 70.4
Dinv11826 Davidia involucrata HOM05D005598 ORTHO05D006587 3.7e-123 445.3 268 83.2
CSS0039611 Camellia sinensis var. sinensis HOM05D005598 ORTHO05D006587 6.4e-123 444.5 311 71.7
Actinidia34728 Actinidia chinensis HOM05D005598 ORTHO05D006587 1.1e-122 443.7 249 84.3
Os11g0153900 Oryza sativa ssp. japonica HOM05D005598 ORTHO05D006587 9.2e-122 440.7 291 71.8
SGA_v2.0_scaffold62G21319 Striga asiatica HOM05D005598 ORTHO05D006587 8.6e-120 434.1 278 77.0
SEGI_12354 Sequoiadendron giganteum HOM05D005598 ORTHO05D006587 4.4e-116 421.8 292 68.8
Glyma.10G278500 Glycine max HOM05D005598 ORTHO05D006587 2.9e-115 419.1 270 76.7
unitig_736.g22318 Utricularia gibba HOM05D005598 ORTHO05D006587 9.2e-114 414.1 294 70.4
MBI01_g02157_MAGBIO Magnolia biondii HOM05D005598 ORTHO05D006587 3.9e-112 408.7 247 81.4
Zm00001eb406890 Zea mays HOM05D005598 ORTHO05D006587 4.3e-111 405.2 267 74.2
Thhalv10000575m.g Eutrema salsugineum HOM05D005598 ORTHO05D006587 5.6e-111 404.8 290 67.9
PSO801G0206 Papaver somniferum HOM05D005598 ORTHO05D006587 5.6e-111 404.8 241 79.3
Cpa.g.c34135 Carica papaya HOM05D005598 ORTHO05D006587 6.2e-110 401.4 222 84.2
Psat0s4121g0080 Pisum sativum HOM05D005598 ORTHO05D006587 4.4e-100 368.6 238 74.4
Mapoly0006s0052 Marchantia polymorpha HOM05D005598 ORTHO05D006587 4.7e-94 348.6 292 57.2
AagrBONN_evm.TU.Sc2ySwM_362.477 Anthoceros agrestis HOM05D005598 ORTHO05D006587 1.4e-90 337.0 289 56.7
Pp3c13_7860 Physcomitrium patens HOM05D005598 ORTHO05D006587 2.1e-89 333.2 246 62.2
AUR62041514 Chenopodium quinoa HOM05D005598 ORTHO05D006587 2.1e-86 323.2 410 47.1
DCAR_006363 Daucus carota HOM05D005598 ORTHO05D006587 9.3e-82 307.8 280 62.5
AL4G16260 Arabidopsis lyrata HOM05D005598 ORTHO05D006587 1.8e-80 303.5 207 69.6
CiPaw.14G033400 Carya illinoinensis HOM05D005598 ORTHO05D006587 3.8e-67 259.2 257 59.5
SMO347G0320 Selaginella moellendorffii HOM05D005598 ORTHO05D006587 6.5e-67 258.5 247 54.7
Lalb_Chr21g0309151 Lupinus albus HOM05D005598 ORTHO05D006587 2.9e-59 233.0 153 75.2
Haze_26455 Corylus avellana HOM05D005598 ORTHO05D006587 1.5e-55 220.7 244 46.3
Cre17.g701350 Chlamydomonas reinhardtii HOM05D005598 ORTHO05D006587 2.8e-54 216.5 291 39.9
Ah.04g160180 Amaranthus hybridus HOM05D005598 ORTHO05D006587 1.1e-53 214.5 120 85.0
Psat4g059000 Pisum sativum HOM05D005598 ORTHO05D006587 2.5e-50 203.4 117 76.1
CBR_g29781 Chara braunii HOM05D005598 ORTHO05D006587 7.9e-49 198.4 195 52.8
MD02G1261400 Malus domestica HOM05D005598 ORTHO05D006587 1.5e-44 184.1 175 59.4
Glyma.07G162800 Glycine max HOM05D005598 ORTHO05D006587 5.0e-43 179.1 224 47.8
Cfa026153 Carpinus fangiana HOM05D005598 ORTHO05D006587 2.2e-35 153.7 259 39.8
HanXRQChr05g0158341 Helianthus annuus HOM05D005598 ORTHO05D006587 1.4e-32 144.4 108 66.7
Psat0s449g0080 Pisum sativum HOM05D000909 ORTHO05D000928 5.0e-27 125.9 73 78.1
Zm00001eb407010 Zea mays HOM05D005598 ORTHO05D006587 2.5e-26 123.6 82 75.6
Psat0s1058g0040 Pisum sativum HOM05D005598 ORTHO05D006587 2.9e-19 100.1 52 88.5
SEGI_12669 Sequoiadendron giganteum HOM05D005598 ORTHO05D006587 4.7e-17 92.8 54 75.9
MBI01_g19134_MAGBIO Magnolia biondii HOM05D005598 ORTHO05D006587 1.8e-16 90.9 55 80.0
Lsat_1_v5_gn_9_94660 Lactuca sativa HOM05D005598 ORTHO05D006587 3.0e-16 90.1 60 75.0
Psat5g185320 Pisum sativum HOM05D000559 ORTHO05D006587 3.0e-16 90.1 52 75.0
Psat4g071240 Pisum sativum HOM05D005598 ORTHO05D006587 2.0e-15 87.4 194 32.5
Psat5g299440 Pisum sativum HOM05D005598 ORTHO05D006587 1.1e-13 81.6 144 36.1
Lalb_Chr21g0309141 Lupinus albus HOM05D005598 ORTHO05D006587 9.2e-13 78.6 54 68.5
Sabra10G0187600 Salix brachista HOM05D005598 ORTHO05D006587 1.6e-12 77.8 50 68.0
Lalb_Chr21g0309161 Lupinus albus HOM05D005598 ORTHO05D006587 2.1e-09 67.4 54 63.0
Pp3c2_19600 Physcomitrium patens HOM05D016613 ORTHO05D014817 4.7e-09 66.2 189 29.1
Cre13.g561900 Chlamydomonas reinhardtii HOM05D016613 ORTHO05D014817 2.3e-08 63.9 171 31.0
MCO01G455 Micromonas commoda HOM05D016613 ORTHO05D014817 4.4e-07 59.7 186 28.0
Psat7g021760 Pisum sativum HOM05D000559 ORTHO05D000596 5.7e-07 59.3 26 92.3
Mapoly0023s0164 Marchantia polymorpha HOM05D016613 ORTHO05D014817 7.5e-07 58.9 183 27.9
Psat6g162040 Pisum sativum HOM05D005598 ORTHO05D006587 9.8e-07 58.5 83 43.4
SMO118G0286 Selaginella moellendorffii HOM05D016613 ORTHO05D014817 9.8e-07 58.5 203 27.1
ClCG05G021840 Citrullus lanatus HOM05D005598 ORTHO05D006587 1.7e-06 57.8 83 43.4
BolC8t51460H Brassica oleracea HOM05D005598 ORTHO05D041141 2.9e-06 57.0 42 66.7


User provided reference genes

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