Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0047691 Rosa chinensis HOM05D004159 ORTHO05D036595 6.1e-42 173.7 86 100.0
RcHm_v2.0_Chr5g0047861 Rosa chinensis HOM05D004159 ORTHO05D036595 5.9e-37 157.1 82 96.3
RcHm_v2.0_Chr5g0047391 Rosa chinensis HOM05D004159 ORTHO05D005858 5.0e-36 154.1 82 95.1
Prupe.3G291100 Prunus persica HOM05D004159 ORTHO05D005858 1.2e-34 149.4 82 86.6
MD17G1027600 Malus domestica HOM05D004159 ORTHO05D005858 2.3e-33 145.2 82 81.7
MD09G1027600 Malus domestica HOM05D004159 ORTHO05D005858 3.9e-33 144.4 82 80.5
Prupe.8G015200 Prunus persica HOM05D004159 ORTHO05D005858 1.5e-32 142.5 82 81.7
Prupe.8G015700 Prunus persica HOM05D004159 ORTHO05D005858 1.5e-32 142.5 82 81.7
FvH4_3g26080 Fragaria vesca HOM05D004159 ORTHO05D005858 3.3e-32 141.4 82 86.6
FAN11G1291 Fragaria x ananassa HOM05D004159 ORTHO05D005858 3.3e-32 141.4 82 86.6
FAN16G1867 Fragaria x ananassa HOM05D004159 ORTHO05D005858 3.3e-32 141.4 82 86.6
FAN25G3844 Fragaria x ananassa HOM05D004159 ORTHO05D005858 3.3e-32 141.4 82 86.6
Prupe.4G071200 Prunus persica HOM05D004159 ORTHO05D005858 8.2e-31 136.7 82 80.5
FAN21G3616 Fragaria x ananassa HOM05D004159 ORTHO05D005858 1.1e-30 136.3 81 85.2
Sabra04G0067000 Salix brachista HOM05D004159 ORTHO05D005858 1.5e-27 125.9 82 74.4
ClCG01G013750 Citrullus lanatus HOM05D004159 ORTHO05D005858 1.9e-27 125.6 82 73.2
TAR629G3285 Trochodendron aralioides HOM05D004159 ORTHO05D005858 1.9e-27 125.6 82 78.0
Cfa007372 Carpinus fangiana HOM05D004159 ORTHO05D005858 3.2e-27 124.8 82 74.4
Haze_14736 Corylus avellana HOM05D004159 ORTHO05D005858 9.4e-27 123.2 82 74.4
Potri.004G121400 Populus trichocarpa HOM05D004159 ORTHO05D005858 9.4e-27 123.2 82 72.0
CSS0048893 Camellia sinensis var. sinensis HOM05D004159 ORTHO05D005858 1.6e-26 122.5 82 76.8
TAR371G0318 Trochodendron aralioides HOM05D004159 ORTHO05D005858 3.6e-26 121.3 82 76.8
MBI16_g23841_MAGBIO Magnolia biondii HOM05D004159 ORTHO05D005858 4.7e-26 120.9 82 74.4
CiPaw.04G028300 Carya illinoinensis HOM05D004159 ORTHO05D005858 6.1e-26 120.6 82 72.0
Sed0001839 Sechium edule HOM05D004159 ORTHO05D005858 6.1e-26 120.6 82 70.7
Sed0003581 Sechium edule HOM05D004159 ORTHO05D005858 6.1e-26 120.6 82 70.7
DCAR_021719 Daucus carota HOM05D004159 ORTHO05D005858 1.0e-25 119.8 82 70.7
PGR142G2553 Punica granatum HOM05D004159 ORTHO05D005858 1.0e-25 119.8 82 69.5
GSVIVG01032412001 Vitis vinifera HOM05D004159 ORTHO05D005858 1.0e-25 119.8 82 73.2
Eucgr.I01748 Eucalyptus grandis HOM05D004159 ORTHO05D005858 1.4e-25 119.4 82 69.5
Nn3g16747 Nelumbo nucifera HOM05D004159 ORTHO05D005858 2.3e-25 118.6 82 73.2
QL02p074797 Quercus lobata HOM05D004159 ORTHO05D005858 2.3e-25 118.6 82 74.4
Actinidia09406 Actinidia chinensis HOM05D004159 ORTHO05D005858 3.0e-25 118.2 82 73.2
CiPaw.03G043300 Carya illinoinensis HOM05D004159 ORTHO05D005858 3.0e-25 118.2 82 69.5
CANSAT64G2890 Cannabis sativa HOM05D004159 ORTHO05D005858 6.7e-25 117.1 82 65.9
Zm00001eb053960 Zea mays HOM05D004159 ORTHO05D005858 6.7e-25 117.1 82 68.3
HanXRQChr04g0114031 Helianthus annuus HOM05D004159 ORTHO05D005858 1.2e-24 116.3 82 73.2
HanXRQChr14g0462651 Helianthus annuus HOM05D004159 ORTHO05D005858 1.2e-24 116.3 82 73.2
Peaxi162Scf00700g00427 Petunia axillaris HOM05D004159 ORTHO05D005858 1.2e-24 116.3 82 69.5
vmacro05861 Vaccinium macrocarpon HOM05D004159 ORTHO05D005858 1.2e-24 116.3 82 70.7
Os03g0699200 Oryza sativa ssp. japonica HOM05D004159 ORTHO05D005858 1.5e-24 115.9 82 69.5
Nitab4.5_0003930g0060 Nicotiana tabacum HOM05D004159 ORTHO05D005858 2.0e-24 115.5 82 69.5
Nitab4.5_0006221g0020 Nicotiana tabacum HOM05D004159 ORTHO05D005858 2.0e-24 115.5 82 69.5
Rhsim10G0017800 Rhododendron simsii HOM05D004159 ORTHO05D005858 2.0e-24 115.5 82 70.7
SGA_v2.0_scaffold32G13248 Striga asiatica HOM05D004159 ORTHO05D005858 2.0e-24 115.5 87 66.7
Cc07_g01750 Coffea canephora HOM05D004159 ORTHO05D005858 2.6e-24 115.2 86 67.4
Dinv33444 Davidia involucrata HOM05D004159 ORTHO05D005858 2.6e-24 115.2 82 72.0
Lj7C599T6 Lonicera japonica HOM05D004159 ORTHO05D005858 2.6e-24 115.2 82 68.3
HPP92_005716 Vanilla planifolia HOM05D004159 ORTHO05D005858 2.6e-24 115.2 80 68.8
TWI56G0312 Tripterygium wilfordii HOM05D004159 ORTHO05D005858 3.3e-24 114.8 82 68.3
Cpa.g.sc108.65 Carica papaya HOM05D004159 ORTHO05D005858 4.4e-24 114.4 82 64.6
MSTRG.20029 Avicennia marina HOM05D004159 ORTHO05D005858 5.7e-24 114.0 87 65.5
CAN.G1819.1 Capsicum annuum HOM05D004159 ORTHO05D005858 5.7e-24 114.0 82 68.3
Solyc07g047670.3 Solanum lycopersicum HOM05D004159 ORTHO05D005858 5.7e-24 114.0 82 68.3
Hma1.2p1_0078F.1_g040070 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 7.5e-24 113.6 82 69.5
THA.LOC104824006 Tarenaya hassleriana HOM05D004159 ORTHO05D005858 7.5e-24 113.6 82 65.9
AT5G14520 Arabidopsis thaliana HOM05D004159 ORTHO05D005858 9.7e-24 113.2 82 65.9
Carub.0006s1270 Capsella rubella HOM05D004159 ORTHO05D005858 9.7e-24 113.2 82 65.9
CARHR198790 Cardamine hirsuta HOM05D004159 ORTHO05D005858 9.7e-24 113.2 82 65.9
ECA240G1354 Erigeron canadensis HOM05D004159 ORTHO05D005858 9.7e-24 113.2 82 70.7
Hma1.2p1_2964F.1_g330970 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 9.7e-24 113.2 82 69.5
ATR1132G032 Amborella trichopoda HOM05D004159 ORTHO05D005858 1.3e-23 112.8 82 64.6
Sopen07g024120 Solanum pennellii HOM05D004159 ORTHO05D005858 1.3e-23 112.8 80 68.8
PGSC0003DMG400006122 Solanum tuberosum HOM05D004159 ORTHO05D005858 1.3e-23 112.8 82 67.1
AUR62029204 Chenopodium quinoa HOM05D004159 ORTHO05D005858 1.7e-23 112.5 82 63.4
CsaV3_1G014060 Cucumis sativus L. HOM05D004159 ORTHO05D005858 1.7e-23 112.5 84 69.0
Aa31LG11G15290 Aethionema arabicum HOM05D004159 ORTHO05D005858 2.2e-23 112.1 82 63.4
AL6G25270 Arabidopsis lyrata HOM05D004159 ORTHO05D005858 2.2e-23 112.1 82 64.6
CDE07G0971 Ceratophyllum demersum HOM05D004159 ORTHO05D005858 2.2e-23 112.1 83 67.5
MD10G1043900 Malus domestica HOM05D004159 ORTHO05D036595 2.2e-23 112.1 63 81.0
BcaB01g05107 Brassica carinata HOM05D004159 ORTHO05D005858 2.8e-23 111.7 82 64.6
A03p06670 Brassica napus HOM05D004159 ORTHO05D005858 2.8e-23 111.7 82 64.6
C03p07700 Brassica napus HOM05D004159 ORTHO05D005858 2.8e-23 111.7 82 64.6
BolC3t13270H Brassica oleracea HOM05D004159 ORTHO05D005858 2.8e-23 111.7 82 64.6
BraA03t10001Z Brassica rapa HOM05D004159 ORTHO05D005858 2.8e-23 111.7 82 64.6
Thhalv10013046m.g Eutrema salsugineum HOM05D004159 ORTHO05D005858 2.8e-23 111.7 82 65.9
Sp6g29490 Schrenkiella parvula HOM05D004159 ORTHO05D005858 2.8e-23 111.7 82 64.6
AUR62040778 Chenopodium quinoa HOM05D004159 ORTHO05D005858 3.7e-23 111.3 82 62.2
AUR62040779 Chenopodium quinoa HOM05D004159 ORTHO05D005858 3.7e-23 111.3 82 62.2
Migut.B00156 Erythranthe guttata HOM05D004159 ORTHO05D005858 4.8e-23 110.9 87 60.9
Migut.N01406 Erythranthe guttata HOM05D004159 ORTHO05D005858 4.8e-23 110.9 87 60.9
PSO764G0137 Papaver somniferum HOM05D004159 ORTHO05D005858 4.8e-23 110.9 83 66.3
Ah.09g231680 Amaranthus hybridus HOM05D004159 ORTHO05D005858 6.3e-23 110.5 82 67.1
EL10Ac8g19455 Beta vulgaris HOM05D004159 ORTHO05D005858 6.3e-23 110.5 82 62.2
Lsat_1_v5_gn_2_51000 Lactuca sativa HOM05D004159 ORTHO05D005858 8.3e-23 110.2 82 70.7
PSO017G2175 Papaver somniferum HOM05D004159 ORTHO05D005858 8.3e-23 110.2 82 67.1
COL.COLO4_29105 Corchorus olitorius HOM05D004159 ORTHO05D005858 1.1e-22 109.8 82 68.3
MELO3C004873.2 Cucumis melo HOM05D004159 ORTHO05D005858 1.1e-22 109.8 84 66.7
Psat0s1782g0040 Pisum sativum HOM05D004159 ORTHO05D005858 1.1e-22 109.8 82 64.6
Aqoxy5G03802 Aquilegia oxysepala HOM05D004159 ORTHO05D005858 1.4e-22 109.4 82 64.6
Duzib187G0134 Durio zibethinus HOM05D004159 ORTHO05D005858 1.4e-22 109.4 82 68.3
Oeu048622.3 Olea europaea HOM05D004159 ORTHO05D005858 1.8e-22 109.0 83 62.7
unitig_21.g20810 Utricularia gibba HOM05D004159 ORTHO05D005858 1.8e-22 109.0 87 58.6
VMungo0720G1997 Vigna mungo HOM05D004159 ORTHO05D005858 1.8e-22 109.0 82 64.6
Glyma.19G232500 Glycine max HOM05D004159 ORTHO05D005858 2.4e-22 108.6 82 64.6
SalBow6G0855 Salvia bowleyana HOM05D004159 ORTHO05D005858 2.4e-22 108.6 86 62.8
Duzib264G0191 Durio zibethinus HOM05D004159 ORTHO05D005858 3.1e-22 108.2 82 67.1
PSO478G0945 Papaver somniferum HOM05D004159 ORTHO05D005858 4.1e-22 107.8 82 65.9
Ca_26485_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 5.3e-22 107.5 82 63.4
Gohir.A07G222900 Gossypium hirsutum HOM05D004159 ORTHO05D005858 5.3e-22 107.5 82 67.1
Gohir.D07G229600 Gossypium hirsutum HOM05D004159 ORTHO05D005858 5.3e-22 107.5 82 67.1
Gorai.001G264700 Gossypium raimondii HOM05D004159 ORTHO05D005858 5.3e-22 107.5 82 67.1
Ca_22754_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 9.1e-22 106.7 82 63.4
Lj1g0017236 Lotus japonicus HOM05D004159 ORTHO05D005858 9.1e-22 106.7 82 63.4
Phvul.007G070900 Phaseolus vulgaris HOM05D004159 ORTHO05D005858 9.1e-22 106.7 82 63.4
Hund22314 Selenicereus undatus HOM05D004159 ORTHO05D005858 1.2e-21 106.3 83 61.4
LjContig00272g0012452 Lotus japonicus HOM05D004159 ORTHO05D005858 1.6e-21 105.9 82 63.4
Medtr7g100040 Medicago truncatula HOM05D004159 ORTHO05D005858 1.6e-21 105.9 82 62.2
THA.LOC104822401 Tarenaya hassleriana HOM05D004159 ORTHO05D005858 1.6e-21 105.9 82 61.0
Thecc.04G016700 Theobroma cacao HOM05D004159 ORTHO05D005858 1.6e-21 105.9 82 67.1
Lalb_Chr02g0160481 Lupinus albus HOM05D004159 ORTHO05D005858 2.0e-21 105.5 82 62.2
Lalb_Chr06g0175751 Lupinus albus HOM05D004159 ORTHO05D005858 3.5e-21 104.8 82 61.0
arahy.Tifrunner.gnm1.ann1.M4LD34 Arachis hypogaea HOM05D004159 ORTHO05D005858 5.9e-21 104.0 82 61.0
Sc03g0007510 Simmondsia chinensis HOM05D004159 ORTHO05D005858 5.9e-21 104.0 83 61.4
TPR.G1071 Trifolium pratense HOM05D004159 ORTHO05D005858 7.7e-21 103.6 82 62.2
Manes.17G112500 Manihot esculenta HOM05D004159 ORTHO05D005858 1.7e-20 102.4 82 65.9
Glyma.03G234900 Glycine max HOM05D004159 ORTHO05D005858 2.2e-20 102.1 82 61.0
Lsat_1_v5_gn_4_179560 Lactuca sativa HOM05D004159 ORTHO05D005858 2.9e-20 101.7 82 64.6
Medtr8g010330 Medicago truncatula HOM05D004159 ORTHO05D005858 1.1e-19 99.8 82 58.5
Nitab4.5_0008375g0010 Nicotiana tabacum HOM05D004159 ORTHO05D005858 1.1e-19 99.8 69 71.0
Ciclev10014699m.g Citrus clementina HOM05D004159 ORTHO05D005858 1.5e-19 99.4 83 59.0
Atru.chr6.2388 Acer truncatum HOM05D004159 ORTHO05D005858 1.9e-19 99.0 83 60.2
ClCG11G000220 Citrullus lanatus HOM05D004159 ORTHO05D005858 2.5e-19 98.6 84 56.0
SEGI_02382 Sequoiadendron giganteum HOM05D004159 ORTHO05D005858 4.2e-19 97.8 82 59.8
CBR_g38896 Chara braunii HOM05D004159 ORTHO05D005858 4.0e-17 91.3 82 56.1
SMO356G0182 Selaginella moellendorffii HOM05D004159 ORTHO05D005858 5.2e-17 90.9 82 54.9
Cre16.g683793 Chlamydomonas reinhardtii HOM05D004159 ORTHO05D005858 9.8e-16 86.7 83 54.2
AagrBONN_evm.TU.Sc2ySwM_362.1908 Anthoceros agrestis HOM05D004159 ORTHO05D005858 3.7e-15 84.7 82 53.7
TPR.G27000 Trifolium pratense HOM05D004159 ORTHO05D005858 6.3e-15 84.0 69 56.5
Mapoly0138s0023 Marchantia polymorpha HOM05D004159 ORTHO05D005858 1.4e-14 82.8 82 50.0
Dinv35104 Davidia involucrata HOM05D004159 ORTHO05D005858 9.1e-14 80.1 61 65.6
CDE06G0546 Ceratophyllum demersum HOM05D004159 ORTHO05D005858 2.0e-13 79.0 62 62.9
Hma1.2p1_0999F.1_g246250 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 2.7e-13 78.6 61 63.9
PRCOL_00002170 Prasinoderma coloniale HOM05D004159 ORTHO05D005858 5.9e-13 77.4 82 50.0
MCO04G526 Micromonas commoda HOM05D004159 ORTHO05D005858 1.3e-12 76.3 67 53.7
Pp3c3_23250 Physcomitrium patens HOM05D004159 ORTHO05D005858 5.0e-12 74.3 67 55.2
Haze_26879 Corylus avellana HOM05D004159 ORTHO05D005858 2.6e-08 62.0 72 36.1
Cfa027221 Carpinus fangiana HOM05D004159 ORTHO05D006938 7.0e-06 53.9 48 52.1
ECA248G2726 Erigeron canadensis HOM05D004159 ORTHO05D005858 9.2e-06 53.5 81 40.7


User provided reference genes

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