Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0047221 Rosa chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1867.8 950 100.0
RcHm_v2.0_Chr2g0166651 Rosa chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1440.6 1003 75.0
Prupe.3G259400 Prunus persica HOM05D004116 ORTHO05D004734 0.0e+00 1411.0 1004 74.1
MD17G1056200 Malus domestica HOM05D004116 ORTHO05D004734 0.0e+00 1407.1 997 74.1
FAN09G3106 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1400.2 1010 73.1
FvH4_6g47550 Fragaria vesca HOM05D004116 ORTHO05D004734 0.0e+00 1399.0 1008 73.1
FAN14G3940 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1397.9 1008 73.0
MD09G1060800 Malus domestica HOM05D004116 ORTHO05D004734 0.0e+00 1388.6 1016 72.3
FAN05G0837 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1385.5 1050 70.5
FAN02G1010 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1382.1 1052 70.2
Hma1.2p1_0037F.1_g023840 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 0.0e+00 1344.7 1008 70.8
Dinv33806 Davidia involucrata HOM05D004116 ORTHO05D004734 0.0e+00 1343.2 1014 69.8
Haze_14475 Corylus avellana HOM05D004116 ORTHO05D004734 0.0e+00 1342.8 1015 69.8
CiPaw.03G091800 Carya illinoinensis HOM05D004116 ORTHO05D004734 0.0e+00 1341.6 1013 69.7
ClCG10G015430 Citrullus lanatus HOM05D004116 ORTHO05D004734 0.0e+00 1337.4 1014 69.8
Actinidia26244 Actinidia chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1333.5 1013 69.8
Dinv11490 Davidia involucrata HOM05D004116 ORTHO05D004734 0.0e+00 1330.5 1013 69.7
TWI60G1537 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 0.0e+00 1328.5 1011 69.7
GSVIVG01011484001 Vitis vinifera HOM05D004116 ORTHO05D004734 0.0e+00 1327.8 1010 69.9
MELO3C009839.2 Cucumis melo HOM05D004116 ORTHO05D004734 0.0e+00 1326.2 1013 69.9
TWI34G1118 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 0.0e+00 1325.5 1011 69.5
Lj4C115G25 Lonicera japonica HOM05D004116 ORTHO05D004734 0.0e+00 1324.3 1011 69.3
CAN.G206.195 Capsicum annuum HOM05D004116 ORTHO05D004734 0.0e+00 1321.6 1013 69.4
CsaV3_3G041070 Cucumis sativus L. HOM05D004116 ORTHO05D004734 0.0e+00 1320.8 1014 69.9
vmacro18164 Vaccinium macrocarpon HOM05D004116 ORTHO05D004734 0.0e+00 1318.5 1012 69.5
QL02p039609 Quercus lobata HOM05D004116 ORTHO05D004734 0.0e+00 1317.8 1005 69.7
QL02p039361 Quercus lobata HOM05D004116 ORTHO05D004734 0.0e+00 1317.0 1005 69.7
Ciclev10010958m.g Citrus clementina HOM05D004116 ORTHO05D004734 0.0e+00 1316.2 1019 68.5
PGSC0003DMG400001440 Solanum tuberosum HOM05D004116 ORTHO05D004734 0.0e+00 1315.4 1014 68.9
Sopen02g033270 Solanum pennellii HOM05D004116 ORTHO05D004734 0.0e+00 1313.9 1014 68.7
DCAR_011063 Daucus carota HOM05D004116 ORTHO05D004734 0.0e+00 1312.0 1000 69.2
TAR629G1084 Trochodendron aralioides HOM05D004116 ORTHO05D004734 0.0e+00 1312.0 1013 68.4
CSS0030715 Camellia sinensis var. sinensis HOM05D004116 ORTHO05D004734 0.0e+00 1308.5 1013 68.6
Sed0005067 Sechium edule HOM05D004116 ORTHO05D004734 0.0e+00 1308.1 1006 68.8
Cc07_g03830 Coffea canephora HOM05D004116 ORTHO05D004734 0.0e+00 1306.2 1004 68.5
PGR004G0109 Punica granatum HOM05D004116 ORTHO05D004734 0.0e+00 1306.2 1003 68.0
Nitab4.5_0000565g0080 Nicotiana tabacum HOM05D004116 ORTHO05D004734 0.0e+00 1305.4 1050 66.9
Gorai.006G012900 Gossypium raimondii HOM05D004116 ORTHO05D004734 0.0e+00 1304.7 1024 68.2
Thecc.04G090300 Theobroma cacao HOM05D004116 ORTHO05D004734 0.0e+00 1304.7 1015 68.2
Atru.chr8.371 Acer truncatum HOM05D004116 ORTHO05D004734 0.0e+00 1303.1 1016 67.6
Manes.01G099400 Manihot esculenta HOM05D004116 ORTHO05D004734 0.0e+00 1302.7 999 68.4
Duzib147G0424 Durio zibethinus HOM05D004116 ORTHO05D004734 0.0e+00 1302.0 1016 68.4
Gohir.D09G011100 Gossypium hirsutum HOM05D004116 ORTHO05D004734 0.0e+00 1301.6 1024 68.1
SGA_v2.0_scaffold413G51160 Striga asiatica HOM05D004116 ORTHO05D004734 0.0e+00 1301.2 980 69.4
Lju41A7G39 Lonicera japonica HOM05D004116 ORTHO05D004734 0.0e+00 1298.9 1026 68.2
Duzib264G1228 Durio zibethinus HOM05D004116 ORTHO05D004734 0.0e+00 1297.7 1016 68.4
CANSAT64G2358 Cannabis sativa HOM05D004116 ORTHO05D004734 0.0e+00 1297.3 1001 68.6
THA.LOC104822346 Tarenaya hassleriana HOM05D004116 ORTHO05D004734 0.0e+00 1295.8 1010 67.8
Oeu045355.1 Olea europaea HOM05D004116 ORTHO05D004734 0.0e+00 1294.3 1012 67.5
Peaxi162Scf00166g00825 Petunia axillaris HOM05D004116 ORTHO05D004734 0.0e+00 1292.3 1013 67.4
SGA_v2.0_scaffold4G02415 Striga asiatica HOM05D004116 ORTHO05D004734 0.0e+00 1285.0 1013 67.1
MSTRG.23904 Avicennia marina HOM05D004116 ORTHO05D004734 0.0e+00 1283.5 1011 67.5
arahy.Tifrunner.gnm1.ann1.M1DWNQ Arachis hypogaea HOM05D004116 ORTHO05D004734 0.0e+00 1283.1 1027 66.5
Rhsim08G0073200 Rhododendron simsii HOM05D004116 ORTHO05D004734 0.0e+00 1281.5 1061 65.1
Sc10g0003320 Simmondsia chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1280.0 1022 67.2
Migut.H00657 Erythranthe guttata HOM05D004116 ORTHO05D004734 0.0e+00 1278.8 1005 66.5
HanXRQChr15g0488441 Helianthus annuus HOM05D004116 ORTHO05D004734 0.0e+00 1278.5 968 68.5
Eucgr.I01989 Eucalyptus grandis HOM05D004116 ORTHO05D004734 0.0e+00 1278.1 1002 67.3
AT5G15400 Arabidopsis thaliana HOM05D004116 ORTHO05D004734 0.0e+00 1276.9 1009 66.4
Glyma.19G027200 Glycine max HOM05D004116 ORTHO05D004734 0.0e+00 1276.2 1010 67.2
Nitab4.5_0008573g0070 Nicotiana tabacum HOM05D004116 ORTHO05D004734 0.0e+00 1273.5 1051 65.2
AL6G26260 Arabidopsis lyrata HOM05D004116 ORTHO05D004734 0.0e+00 1273.1 1009 66.1
Lsat_1_v5_gn_4_170201 Lactuca sativa HOM05D004116 ORTHO05D004734 0.0e+00 1270.4 982 67.5
Lj2g0025037 Lotus japonicus HOM05D004116 ORTHO05D004734 0.0e+00 1270.4 1021 66.4
Carub.0006s1357 Capsella rubella HOM05D004116 ORTHO05D004734 0.0e+00 1269.6 1009 66.0
Cfa007620 Carpinus fangiana HOM05D004116 ORTHO05D004734 0.0e+00 1269.2 1015 66.9
Glyma.13G059200 Glycine max HOM05D004116 ORTHO05D004734 0.0e+00 1269.2 1013 66.7
Lalb_Chr21g0318471 Lupinus albus HOM05D004116 ORTHO05D004734 0.0e+00 1268.8 1014 66.3
VMungo0464G1725 Vigna mungo HOM05D004116 ORTHO05D004734 0.0e+00 1268.8 1015 66.7
Aa31LG11G14160 Aethionema arabicum HOM05D004116 ORTHO05D004734 0.0e+00 1266.5 1015 66.3
CARHR197910 Cardamine hirsuta HOM05D004116 ORTHO05D004734 0.0e+00 1265.8 1008 66.3
Gohir.A09G012200 Gossypium hirsutum HOM05D004116 ORTHO05D004734 0.0e+00 1265.4 1009 66.6
Phvul.004G033100 Phaseolus vulgaris HOM05D004116 ORTHO05D004734 0.0e+00 1265.4 1018 66.6
HanXRQChr09g0264141 Helianthus annuus HOM05D004116 ORTHO05D004734 0.0e+00 1264.6 995 67.0
TPR.G26216 Trifolium pratense HOM05D004116 ORTHO05D004734 0.0e+00 1263.1 1008 66.4
Ca_04866_v3 Cicer arietinum L. HOM05D004116 ORTHO05D004734 0.0e+00 1261.5 1002 66.3
Nn4g23336 Nelumbo nucifera HOM05D004116 ORTHO05D004734 0.0e+00 1259.2 1016 66.6
Sp6g28690 Schrenkiella parvula HOM05D004116 ORTHO05D004734 0.0e+00 1258.0 1008 66.0
PGSC0003DMG400007132 Solanum tuberosum HOM05D004116 ORTHO05D004734 0.0e+00 1256.1 1013 66.4
Thhalv10012542m.g Eutrema salsugineum HOM05D004116 ORTHO05D004734 0.0e+00 1254.2 1008 65.9
Potri.017G089600 Populus trichocarpa HOM05D004116 ORTHO05D004734 0.0e+00 1251.5 994 67.1
Potri.004G121200 Populus trichocarpa HOM05D004116 ORTHO05D004734 0.0e+00 1250.3 994 67.2
BraA02t05272Z Brassica rapa HOM05D004116 ORTHO05D004734 0.0e+00 1248.4 1007 65.3
COL.COLO4_07430 Corchorus olitorius HOM05D004116 ORTHO05D004734 0.0e+00 1247.3 1006 66.7
A02p03010 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1243.0 1011 65.2
Medtr6g013690 Medicago truncatula HOM05D004116 ORTHO05D004734 0.0e+00 1242.3 1011 65.9
Aqoxy3G03559 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 0.0e+00 1238.8 1003 64.6
C02p07680 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1234.9 1015 64.4
BolC2t06699H Brassica oleracea HOM05D004116 ORTHO05D004734 0.0e+00 1234.9 1015 64.4
Sabra17G0078900 Salix brachista HOM05D004116 ORTHO05D004734 0.0e+00 1234.6 1011 65.1
Sopen06g031210 Solanum pennellii HOM05D004116 ORTHO05D004734 0.0e+00 1234.2 998 65.4
A10p23490 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1233.8 1017 64.7
BraA10t44416Z Brassica rapa HOM05D004116 ORTHO05D004734 0.0e+00 1233.8 1017 64.7
C09p61720 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1226.1 1014 64.5
BolC9t59011H Brassica oleracea HOM05D004116 ORTHO05D004734 0.0e+00 1225.7 1014 64.7
PSO063G3309 Papaver somniferum HOM05D004116 ORTHO05D004734 0.0e+00 1225.3 1008 63.7
BcaC03g13414 Brassica carinata HOM05D004116 ORTHO05D004734 0.0e+00 1219.1 1009 64.2
PSO013G0369 Papaver somniferum HOM05D004116 ORTHO05D004734 0.0e+00 1219.1 1008 63.5
arahy.Tifrunner.gnm1.ann1.JWLU7F Arachis hypogaea HOM05D004116 ORTHO05D004734 0.0e+00 1218.4 1016 64.5
EL10Ac2g03047 Beta vulgaris HOM05D004116 ORTHO05D004734 0.0e+00 1201.8 1113 59.6
Aqoxy3G01362 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 0.0e+00 1194.5 1008 62.4
MBI19_g32361_MAGBIO Magnolia biondii HOM05D004116 ORTHO05D004734 0.0e+00 1176.0 1027 62.2
Solyc06g074770.4 Solanum lycopersicum HOM05D004116 ORTHO05D004734 0.0e+00 1131.3 942 63.9
FAN11G2920 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1130.5 953 66.4
ECA232G0495 Erigeron canadensis HOM05D004116 ORTHO05D004734 0.0e+00 1129.8 862 68.3
Cpa.g.sc14.139 Carica papaya HOM05D004116 ORTHO05D004734 0.0e+00 1115.5 1014 62.1
AUR62018140 Chenopodium quinoa HOM05D004116 ORTHO05D004734 0.0e+00 1100.5 1014 60.7
HPP92_023626 Vanilla planifolia HOM05D004116 ORTHO05D004734 0.0e+00 1100.5 951 60.9
SHI16441 Sapria himalayana HOM05D004116 ORTHO05D004734 0.0e+00 1077.4 985 59.1
unitig_744.g24002 Utricularia gibba HOM05D004116 ORTHO05D004734 1.3e-311 1072.8 1008 58.4
FAN25G2854 Fragaria x ananassa HOM05D004116 ORTHO05D004734 7.1e-309 1063.9 908 66.0
Os03g0427900 Oryza sativa ssp. japonica HOM05D004116 ORTHO05D004734 2.1e-308 1062.4 1007 56.3
AUR62034478 Chenopodium quinoa HOM05D004116 ORTHO05D004734 9.6e-306 1053.5 1014 59.0
ATR0111G012 Amborella trichopoda HOM05D004116 ORTHO05D004734 7.9e-292 1007.3 812 64.7
Mapoly0052s0078 Marchantia polymorpha HOM05D004116 ORTHO05D004734 6.3e-273 944.5 1017 51.0
AagrBONN_evm.TU.Sc2ySwM_340.219 Anthoceros agrestis HOM05D004116 ORTHO05D004734 4.1e-272 941.8 1011 52.3
SMO356G0406 Selaginella moellendorffii HOM05D004116 ORTHO05D004734 3.7e-265 918.7 1010 49.7
Ah.12g062550 Amaranthus hybridus HOM05D004116 ORTHO05D004734 2.1e-252 876.3 713 64.2
Pp3c15_20630 Physcomitrium patens HOM05D004116 ORTHO05D004734 7.5e-250 867.8 1021 48.0
PSO144G0086 Papaver somniferum HOM05D004116 ORTHO05D004734 1.3e-249 867.1 990 50.7
Zm00001eb393280 Zea mays HOM05D004116 ORTHO05D004734 4.8e-249 865.1 696 62.8
Zm00001eb020370 Zea mays HOM05D004116 ORTHO05D004734 2.4e-248 862.8 697 62.7
PSO170G0544 Papaver somniferum HOM05D004116 ORTHO05D004734 1.9e-245 853.2 983 51.1
PSO325G0009 Papaver somniferum HOM05D004116 ORTHO05D004734 5.9e-239 831.6 975 50.1
Hma1.2p1_0604F.1_g187770 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 1.1e-237 827.4 545 76.3
CDE04G3780 Ceratophyllum demersum HOM05D004116 ORTHO05D004734 6.4e-225 785.0 607 65.4
Aqoxy3G00661 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 2.4e-208 729.9 544 68.2
Psat1g069120 Pisum sativum HOM05D004116 ORTHO05D004734 8.9e-203 711.4 447 77.6
FvH4_3g25920 Fragaria vesca HOM05D004116 ORTHO05D004734 7.3e-197 691.8 435 81.1
Solyc02g088550.4 Solanum lycopersicum HOM05D004116 ORTHO05D004734 1.3e-188 664.5 416 79.3
FAN16G3124 Fragaria x ananassa HOM05D004116 ORTHO05D004734 3.5e-183 646.4 467 73.2
PSO017G4845 Papaver somniferum HOM05D004116 ORTHO05D004734 1.7e-177 627.5 1015 41.4
PSO144G0082 Papaver somniferum HOM05D004116 ORTHO05D004734 1.8e-171 607.4 960 40.9
FvH4_3g25930 Fragaria vesca HOM05D004116 ORTHO05D004734 7.9e-167 592.0 509 67.0
CBR_g12108 Chara braunii HOM05D004116 ORTHO05D004734 3.7e-156 556.6 509 55.2
BcaC04g24243 Brassica carinata HOM05D004116 ORTHO05D004734 1.0e-153 548.5 353 75.9
FAN17G0761 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.0e-149 534.3 371 74.1
CDE07G1255 Ceratophyllum demersum HOM05D006464 ORTHO05D007923 2.4e-147 527.3 400 66.2
FAN09G1300 Fragaria x ananassa HOM05D004116 ORTHO05D004734 4.1e-147 526.6 363 74.4
FAN09G4205 Fragaria x ananassa HOM05D004116 ORTHO05D004734 4.1e-147 526.6 363 74.4
PRCOL_00002499 Prasinoderma coloniale HOM05D004116 ORTHO05D004734 4.0e-142 510.0 1011 35.2
FAN21G0296 Fragaria x ananassa HOM05D004116 ORTHO05D004734 7.5e-141 505.8 370 73.8
Psat1g069040 Pisum sativum HOM05D004116 ORTHO05D004734 1.9e-128 464.5 431 60.6
Aqoxy3G00662 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 1.6e-122 444.9 410 59.0
SEGI_13711 Sequoiadendron giganteum HOM05D004116 ORTHO05D004734 1.3e-121 441.8 317 68.1
PSO761G0054 Papaver somniferum HOM05D004116 ORTHO05D004734 1.7e-116 424.9 617 43.6
PSO384G2573 Papaver somniferum HOM05D004116 ORTHO05D004734 1.0e-113 415.6 568 43.7
Cre09.g398350 Chlamydomonas reinhardtii HOM05D004116 ORTHO05D004734 1.2e-101 375.6 979 31.1
BcaNung03312 Brassica carinata HOM05D004116 ORTHO05D004734 1.3e-97 362.1 496 48.6
FAN12G4053 Fragaria x ananassa HOM05D004116 ORTHO05D004734 5.6e-96 356.7 468 47.9
QL02p039616 Quercus lobata HOM05D004116 ORTHO05D004734 4.4e-93 347.1 266 71.1
Ah.12g062560 Amaranthus hybridus HOM05D004116 ORTHO05D004734 3.9e-81 307.4 277 60.6
FAN21G1378 Fragaria x ananassa HOM05D004116 ORTHO05D004734 6.2e-79 300.1 228 72.4
Lsat_1_v5_gn_8_41201 Lactuca sativa HOM05D004116 ORTHO05D004734 1.2e-77 295.8 195 74.4
FAN16G0481 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.9e-72 278.5 221 71.0
FAN21G1132 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.6e-71 275.4 256 60.9
Actinidia17574 Actinidia chinensis HOM05D004116 ORTHO05D004734 3.8e-68 264.2 277 55.6
CBR_g12111 Chara braunii HOM05D004116 ORTHO05D004734 5.6e-64 250.4 507 33.3
PSO478G4129 Papaver somniferum HOM05D004116 ORTHO05D004734 1.6e-63 248.8 407 41.3
Lsat_1_v5_gn_8_41221 Lactuca sativa HOM05D004116 ORTHO05D004734 6.9e-62 243.4 386 43.0
Actinidia17575 Actinidia chinensis HOM05D004116 ORTHO05D004734 4.6e-50 204.1 136 72.1
Actinidia17576 Actinidia chinensis HOM05D000100 ORTHO05D004702 4.1e-46 191.0 118 80.5
Hma1.2p1_1813F.1_g303850 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 6.9e-46 190.3 156 67.9
MCO05G368 Micromonas commoda HOM05D004116 ORTHO05D004734 1.9e-43 182.2 187 50.3
Lsat_1_v5_gn_0_45261 Lactuca sativa HOM05D004116 ORTHO05D004734 4.6e-42 177.6 168 57.7
FAN16G0041 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.0e-41 176.4 128 76.6
Oeu034757.1 Olea europaea HOM05D004116 ORTHO05D004734 5.7e-40 170.6 135 63.7
Psat1g069080 Pisum sativum HOM05D004116 ORTHO05D004734 1.7e-36 159.1 117 69.2
SalBow6G1256 Salvia bowleyana HOM05D003831 ORTHO05D004440 5.0e-28 131.0 199 39.7
PSO675G1667 Papaver somniferum HOM05D004116 ORTHO05D004734 3.0e-25 121.7 179 41.9
TAR622G0429 Trochodendron aralioides HOM05D004116 ORTHO05D004734 4.0e-25 121.3 256 35.5
AL1G40200 Arabidopsis lyrata HOM05D004116 ORTHO05D004734 4.8e-23 114.4 78 66.7
CDE04G3166 Ceratophyllum demersum HOM05D006464 ORTHO05D007923 2.0e-21 109.0 91 63.7
CAN.G111.24 Capsicum annuum HOM05D004116 ORTHO05D004734 1.2e-18 99.8 259 34.4
Hund13173 Selenicereus undatus HOM05D000214 ORTHO05D000131 3.5e-13 81.6 55 72.7
Cre12.g519150 Chlamydomonas reinhardtii HOM05D004874 ORTHO05D006796 1.3e-12 79.7 70 50.0
Lsat_1_v5_gn_1_20041 Lactuca sativa HOM05D004116 ORTHO05D004734 2.1e-10 72.4 70 51.4
MCO16G187 Micromonas commoda HOM05D004874 ORTHO05D006796 1.0e-09 70.1 118 34.7
Lsat_1_v5_gn_8_37500 Lactuca sativa HOM05D003233 ORTHO05D003694 5.4e-06 57.8 50 60.0


User provided reference genes

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