Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0045601 Rosa chinensis HOM05D004510 ORTHO05D005302 4.7e-191 671.0 336 100.0
RcHm_v2.0_Chr5g0044841 Rosa chinensis HOM05D004510 ORTHO05D005302 1.9e-163 579.3 302 95.4
FAN16G1814 Fragaria x ananassa HOM05D004510 ORTHO05D005302 2.4e-158 562.4 302 92.4
FAN21G2427 Fragaria x ananassa HOM05D004510 ORTHO05D005302 4.0e-158 561.6 303 93.1
FvH4_3g24980 Fragaria vesca HOM05D004510 ORTHO05D005302 9.0e-158 560.5 303 92.7
FAN25G2046 Fragaria x ananassa HOM05D004510 ORTHO05D005302 1.2e-157 560.1 302 92.1
FAN11G3425 Fragaria x ananassa HOM05D004510 ORTHO05D005302 1.7e-156 556.2 305 92.1
Prupe.6G130700 Prunus persica HOM05D004510 ORTHO05D005302 8.7e-153 543.9 302 88.7
MD03G1145900 Malus domestica HOM05D004510 ORTHO05D005302 2.8e-151 538.9 302 88.1
COL.COLO4_19854 Corchorus olitorius HOM05D004510 ORTHO05D005302 1.4e-145 520.0 303 84.5
Thecc.09G282400 Theobroma cacao HOM05D004510 ORTHO05D005302 8.8e-145 517.3 303 84.5
QL01p012154 Quercus lobata HOM05D004510 ORTHO05D005302 2.0e-144 516.2 302 84.4
Haze_23369 Corylus avellana HOM05D004510 ORTHO05D005302 2.5e-144 515.8 302 83.8
CiPaw.13G135100 Carya illinoinensis HOM05D004510 ORTHO05D005302 5.7e-144 514.6 302 83.4
Duzib150G0176 Durio zibethinus HOM05D004510 ORTHO05D005302 7.4e-144 514.2 302 84.1
Gohir.D08G015800 Gossypium hirsutum HOM05D004510 ORTHO05D005302 1.8e-142 509.6 303 82.5
Gorai.004G010100 Gossypium raimondii HOM05D004510 ORTHO05D005302 1.8e-142 509.6 303 82.5
Gohir.A08G005400 Gossypium hirsutum HOM05D004510 ORTHO05D005302 3.1e-142 508.8 303 82.5
GSVIVG01036116001 Vitis vinifera HOM05D004510 ORTHO05D005302 3.4e-141 505.4 302 82.5
Manes.11G162300 Manihot esculenta HOM05D004510 ORTHO05D005302 5.9e-141 504.6 302 82.5
TAR623G1468 Trochodendron aralioides HOM05D004510 ORTHO05D005302 1.7e-140 503.1 301 81.7
CANSAT54G0764 Cannabis sativa HOM05D004510 ORTHO05D005302 3.8e-140 501.9 303 82.2
Potri.009G163300 Populus trichocarpa HOM05D004510 ORTHO05D005302 3.8e-140 501.9 302 81.8
Hma1.2p1_0587F.1_g184290 Hydrangea macrophylla HOM05D004510 ORTHO05D005302 5.5e-139 498.0 309 79.3
RcHm_v2.0_Chr5g0040981 Rosa chinensis HOM05D004510 ORTHO05D005302 7.2e-139 497.7 267 93.3
Atru.chr3.3236 Acer truncatum HOM05D004510 ORTHO05D005302 1.6e-138 496.5 302 81.5
Phvul.011G094800 Phaseolus vulgaris HOM05D004510 ORTHO05D005302 1.6e-138 496.5 302 80.5
Glyma.12G089700 Glycine max HOM05D004510 ORTHO05D005302 3.6e-138 495.4 304 81.2
TPR.G17233 Trifolium pratense HOM05D004510 ORTHO05D005302 4.7e-138 495.0 304 80.3
Medtr4g052930 Medicago truncatula HOM05D004510 ORTHO05D005302 6.1e-138 494.6 304 80.3
VMungo1127G0197 Vigna mungo HOM05D004510 ORTHO05D005302 6.1e-138 494.6 302 79.8
PGR102G0622 Punica granatum HOM05D004510 ORTHO05D005302 1.0e-137 493.8 302 79.8
Glyma.11G182800 Glycine max HOM05D004510 ORTHO05D005302 1.8e-137 493.0 304 80.6
CSS0020343 Camellia sinensis var. sinensis HOM05D004510 ORTHO05D005302 3.0e-137 492.3 301 79.4
Eucgr.B03845 Eucalyptus grandis HOM05D004510 ORTHO05D005302 3.0e-137 492.3 302 80.1
Sabra09G0127400 Salix brachista HOM05D004510 ORTHO05D005302 3.0e-137 492.3 302 80.1
Potri.004G201800 Populus trichocarpa HOM05D004510 ORTHO05D005302 6.7e-137 491.1 301 80.7
Sabra04G0136400 Salix brachista HOM05D004510 ORTHO05D005302 6.7e-137 491.1 302 79.8
Sed0027037 Sechium edule HOM05D004510 ORTHO05D005302 8.8e-137 490.7 301 80.7
MELO3C004700.2 Cucumis melo HOM05D004510 ORTHO05D005302 2.0e-136 489.6 301 81.4
Actinidia24221 Actinidia chinensis HOM05D004510 ORTHO05D005302 2.6e-136 489.2 302 79.1
Ciclev10027862m.g Citrus clementina HOM05D004510 ORTHO05D005302 2.6e-136 489.2 302 80.5
CsaV3_1G014870 Cucumis sativus L. HOM05D004510 ORTHO05D005302 2.6e-136 489.2 301 81.4
Gohir.D05G083300 Gossypium hirsutum HOM05D004510 ORTHO05D005302 7.4e-136 487.6 293 82.9
Ca_19411_v3 Cicer arietinum L. HOM05D004510 ORTHO05D005302 1.3e-135 486.9 303 79.5
Lj3g0009034 Lotus japonicus HOM05D004510 ORTHO05D005302 3.7e-135 485.3 302 78.8
Psat7g187800 Pisum sativum HOM05D004510 ORTHO05D005302 3.7e-135 485.3 303 79.5
AUR62036195 Chenopodium quinoa HOM05D004510 ORTHO05D005302 4.8e-135 485.0 302 79.8
Lalb_Chr03g0028121 Lupinus albus HOM05D004510 ORTHO05D005302 1.1e-134 483.8 302 78.8
Nn6g34880 Nelumbo nucifera HOM05D004510 ORTHO05D005302 1.1e-134 483.8 302 80.1
vmacro03323 Vaccinium macrocarpon HOM05D004510 ORTHO05D005302 1.4e-134 483.4 302 78.5
arahy.Tifrunner.gnm1.ann1.G66SVD Arachis hypogaea HOM05D004510 ORTHO05D005302 4.1e-134 481.9 302 79.1
arahy.Tifrunner.gnm1.ann1.CJK6JS Arachis hypogaea HOM05D004510 ORTHO05D005302 7.0e-134 481.1 302 78.8
Lalb_Chr19g0136431 Lupinus albus HOM05D004510 ORTHO05D005302 1.5e-133 479.9 298 80.2
AUR62009750 Chenopodium quinoa HOM05D004510 ORTHO05D005302 4.5e-133 478.4 302 78.8
Sp4g10250 Schrenkiella parvula HOM05D004510 ORTHO05D005302 2.2e-132 476.1 303 76.9
Hund18760 Selenicereus undatus HOM05D004510 ORTHO05D005302 2.2e-132 476.1 303 77.6
PSO339G0142 Papaver somniferum HOM05D004510 ORTHO05D005302 2.9e-132 475.7 302 77.2
Rhsim13G0112600 Rhododendron simsii HOM05D004510 ORTHO05D005302 2.9e-132 475.7 341 70.4
PSO384G2406 Papaver somniferum HOM05D004510 ORTHO05D005302 3.8e-132 475.3 302 76.8
CAN.G1524.4 Capsicum annuum HOM05D004510 ORTHO05D005302 5.0e-132 474.9 301 78.1
Nitab4.5_0012235g0010 Nicotiana tabacum HOM05D004510 ORTHO05D005302 5.0e-132 474.9 301 77.4
Peaxi162Scf00040g00020 Petunia axillaris HOM05D004510 ORTHO05D005302 8.5e-132 474.2 300 78.0
Nitab4.5_0000755g0090 Nicotiana tabacum HOM05D004510 ORTHO05D005302 1.1e-131 473.8 301 77.4
Cc01_g09050 Coffea canephora HOM05D004510 ORTHO05D005302 1.4e-131 473.4 301 76.7
Oeu035565.1 Olea europaea HOM05D004510 ORTHO05D005302 2.5e-131 472.6 302 76.8
PGSC0003DMG400026338 Solanum tuberosum HOM05D004510 ORTHO05D005302 3.2e-131 472.2 301 77.7
Aqoxy4G02763 Aquilegia oxysepala HOM05D004510 ORTHO05D005302 4.2e-131 471.9 301 78.1
CARHR120110 Cardamine hirsuta HOM05D004510 ORTHO05D005302 1.2e-130 470.3 303 75.6
Thhalv10016271m.g Eutrema salsugineum HOM05D004510 ORTHO05D005302 1.2e-130 470.3 303 75.2
Carub.0004s0808 Capsella rubella HOM05D004510 ORTHO05D005302 1.6e-130 469.9 304 75.3
MD11G1164800 Malus domestica HOM05D004510 ORTHO05D005302 1.6e-130 469.9 302 78.8
AT2G27460 Arabidopsis thaliana HOM05D004510 ORTHO05D005302 3.6e-130 468.8 303 75.2
AL4G21450 Arabidopsis lyrata HOM05D004510 ORTHO05D005302 1.4e-129 466.8 303 75.2
EL10Ac7g15829 Beta vulgaris HOM05D004510 ORTHO05D005302 1.8e-129 466.5 344 69.8
Solyc11g068500.2 Solanum lycopersicum HOM05D004510 ORTHO05D005302 1.8e-129 466.5 301 76.4
BolC4t27208H Brassica oleracea HOM05D004510 ORTHO05D005302 3.0e-129 465.7 303 75.6
BcaB02g10090 Brassica carinata HOM05D004510 ORTHO05D005302 3.9e-129 465.3 303 75.6
Sopen11g027210 Solanum pennellii HOM05D004510 ORTHO05D005302 5.2e-129 464.9 301 76.1
BcaC02g10877 Brassica carinata HOM05D004510 ORTHO05D005302 6.7e-129 464.5 303 75.6
C04p24140 Brassica napus HOM05D004510 ORTHO05D005302 6.7e-129 464.5 303 75.6
BolC4t23911H Brassica oleracea HOM05D004510 ORTHO05D005302 6.7e-129 464.5 303 75.6
DCAR_010345 Daucus carota HOM05D004510 ORTHO05D005302 6.7e-129 464.5 301 77.7
Aa31LG5G8800 Aethionema arabicum HOM05D004510 ORTHO05D005302 8.8e-129 464.2 330 70.6
A07p18220 Brassica napus HOM05D004510 ORTHO05D005302 2.6e-128 462.6 305 74.4
C04p56760 Brassica napus HOM05D004510 ORTHO05D005302 4.4e-128 461.8 303 75.2
A04p20970 Brassica napus HOM05D004510 ORTHO05D005302 7.4e-128 461.1 303 75.2
BraA04t17666Z Brassica rapa HOM05D004510 ORTHO05D005302 7.4e-128 461.1 303 75.2
TWI31G0469 Tripterygium wilfordii HOM05D004510 ORTHO05D005302 2.2e-127 459.5 302 77.2
BraA07t29538Z Brassica rapa HOM05D004510 ORTHO05D005302 3.7e-127 458.8 304 75.0
ClCG01G011880 Citrullus lanatus HOM05D004510 ORTHO05D005302 8.2e-127 457.6 267 84.6
THA.LOC104815723 Tarenaya hassleriana HOM05D004510 ORTHO05D005302 2.0e-125 453.0 304 74.3
ECA233G5657 Erigeron canadensis HOM05D004510 ORTHO05D005302 2.6e-125 452.6 301 74.4
THA.LOC104826427 Tarenaya hassleriana HOM05D004510 ORTHO05D005302 3.5e-125 452.2 302 74.5
HanXRQChr16g0526961 Helianthus annuus HOM05D004510 ORTHO05D005302 7.7e-125 451.1 302 72.5
ATR0776G017 Amborella trichopoda HOM05D004510 ORTHO05D005302 1.7e-124 449.9 298 74.8
SalBow3G0413 Salvia bowleyana HOM05D004510 ORTHO05D005302 1.7e-124 449.9 301 73.1
HPP92_011904 Vanilla planifolia HOM05D004510 ORTHO05D005302 6.5e-124 448.0 302 73.8
Migut.N02488 Erythranthe guttata HOM05D004510 ORTHO05D005302 8.5e-124 447.6 301 73.4
Lsat_1_v5_gn_6_38881 Lactuca sativa HOM05D004510 ORTHO05D005302 1.5e-123 446.8 302 73.2
HanXRQChr13g0397471 Helianthus annuus HOM05D004510 ORTHO05D005302 7.2e-123 444.5 301 71.8
Gorai.009G085000 Gossypium raimondii HOM05D004510 ORTHO05D005302 4.7e-122 441.8 302 75.2
Lj1C236G5 Lonicera japonica HOM05D004510 ORTHO05D005302 6.7e-121 438.0 434 56.2
CDE06G1114 Ceratophyllum demersum HOM05D004510 ORTHO05D005302 1.2e-120 437.2 301 70.8
SGA_v2.0_scaffold295G47522 Striga asiatica HOM05D004510 ORTHO05D005302 2.0e-120 436.4 301 71.8
SEGI_33849 Sequoiadendron giganteum HOM05D004510 ORTHO05D005302 2.2e-116 422.9 301 70.1
unitig_8.g2975 Utricularia gibba HOM05D001558 ORTHO05D005302 1.5e-112 410.2 301 67.4
CDE08G1408 Ceratophyllum demersum HOM05D004510 ORTHO05D005302 5.4e-110 401.7 280 70.0
Gohir.A05G080300 Gossypium hirsutum HOM05D004510 ORTHO05D005302 4.7e-106 388.7 295 69.5
Mapoly0020s0029 Marchantia polymorpha HOM05D004510 ORTHO05D005302 2.3e-105 386.3 316 61.7
Zm00001eb288910 Zea mays HOM05D004510 ORTHO05D005302 8.9e-105 384.4 304 63.8
SGA_v2.0_scaffold177G39411 Striga asiatica HOM05D004510 ORTHO05D005302 2.6e-104 382.9 301 64.8
Os05g0443300 Oryza sativa ssp. japonica HOM05D004510 ORTHO05D005302 1.8e-102 376.7 301 62.5
Zm00001eb348320 Zea mays HOM05D004510 ORTHO05D005302 1.6e-101 373.6 301 62.1
Sc21g0007070 Simmondsia chinensis HOM05D004510 ORTHO05D005302 6.6e-100 368.2 241 75.5
AagrBONN_evm.TU.Sc2ySwM_369.588 Anthoceros agrestis HOM05D004510 ORTHO05D005302 1.6e-98 363.6 301 60.5
Pp3c9_6480 Physcomitrium patens HOM05D004510 ORTHO05D005302 3.6e-98 362.5 304 61.2
SHI33806 Sapria himalayana HOM05D000105 ORTHO05D000023 5.8e-96 355.1 304 59.9
Pp3c9_12900 Physcomitrium patens HOM05D004510 ORTHO05D005302 1.7e-95 353.6 303 59.1
SMO119G0407 Selaginella moellendorffii HOM05D004510 ORTHO05D005302 1.5e-91 340.5 327 56.0
CBR_g98 Chara braunii HOM05D004510 ORTHO05D005302 5.2e-89 332.0 340 53.5
Ah.08g215670 Amaranthus hybridus HOM05D004510 ORTHO05D005302 9.8e-88 327.8 302 59.9
Os04g0412900 Oryza sativa ssp. japonica HOM05D004510 ORTHO05D005302 6.6e-84 315.1 296 55.1
Pp3c9_6470 Physcomitrium patens HOM05D004510 ORTHO05D005302 8.9e-81 304.7 218 69.3
Zm00001eb421940 Zea mays HOM05D004510 ORTHO05D005302 3.5e-77 292.7 296 51.7
Dinv22838 Davidia involucrata HOM05D004510 ORTHO05D005302 9.2e-70 268.1 168 78.0
Cpa.g.sc3326.1 Carica papaya HOM05D004510 ORTHO05D005302 8.1e-66 255.0 168 75.6
Cpa.g.sc2302.1 Carica papaya HOM05D004510 ORTHO05D005302 1.4e-62 244.2 133 91.0
MCO07G305 Micromonas commoda HOM05D004510 ORTHO05D005302 4.9e-55 219.2 306 40.2
PRCOL_00001783 Prasinoderma coloniale HOM05D004510 ORTHO05D005302 2.0e-48 197.2 280 41.1
RcHm_v2.0_Chr5g0044471 Rosa chinensis HOM05D004510 ORTHO05D005302 1.4e-46 191.0 109 89.0
MBI17_g08333_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000003 8.7e-36 155.2 101 74.3
Dinv42548 Davidia involucrata HOM05D004510 ORTHO05D005302 1.1e-25 121.7 76 75.0
CSS0032823 Camellia sinensis var. sinensis HOM05D000557 ORTHO05D005302 1.1e-22 111.7 91 61.5
BcaB01g01177 Brassica carinata HOM05D004510 ORTHO05D005302 4.4e-19 99.8 83 57.8
Pp3c2_38440 Physcomitrium patens HOM05D004510 ORTHO05D005302 2.2e-10 70.9 100 40.0
Pp3c26_15780 Physcomitrium patens HOM05D004510 ORTHO05D005302 4.1e-09 66.6 100 38.0
Pp3c17_10 Physcomitrium patens HOM05D004510 ORTHO05D005302 5.3e-09 66.2 95 40.0
Pp3c23_90 Physcomitrium patens HOM05D004510 ORTHO05D005302 5.3e-09 66.2 95 40.0


User provided reference genes

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