Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0044471 Rosa chinensis HOM05D004510 ORTHO05D005302 6.2e-70 267.3 133 100.0
RcHm_v2.0_Chr5g0040981 Rosa chinensis HOM05D004510 ORTHO05D005302 1.4e-53 213.0 110 95.5
RcHm_v2.0_Chr5g0044841 Rosa chinensis HOM05D004510 ORTHO05D005302 1.0e-51 206.8 109 94.5
FAN16G1814 Fragaria x ananassa HOM05D004510 ORTHO05D005302 6.5e-51 204.1 109 93.6
FAN21G2427 Fragaria x ananassa HOM05D004510 ORTHO05D005302 6.5e-51 204.1 109 93.6
FvH4_3g24980 Fragaria vesca HOM05D004510 ORTHO05D005302 1.4e-50 203.0 109 92.7
FAN11G3425 Fragaria x ananassa HOM05D004510 ORTHO05D005302 1.4e-50 203.0 109 92.7
FAN25G2046 Fragaria x ananassa HOM05D004510 ORTHO05D005302 2.5e-50 202.2 109 92.7
MD03G1145900 Malus domestica HOM05D004510 ORTHO05D005302 2.3e-48 195.7 109 88.1
Prupe.6G130700 Prunus persica HOM05D004510 ORTHO05D005302 2.6e-47 192.2 109 89.0
RcHm_v2.0_Chr5g0045601 Rosa chinensis HOM05D004510 ORTHO05D005302 4.4e-47 191.4 109 89.0
MD11G1164800 Malus domestica HOM05D004510 ORTHO05D005302 6.3e-46 187.6 109 84.4
Duzib150G0176 Durio zibethinus HOM05D004510 ORTHO05D005302 3.1e-45 185.3 110 85.5
QL01p012154 Quercus lobata HOM05D004510 ORTHO05D005302 3.1e-45 185.3 108 86.1
CiPaw.13G135100 Carya illinoinensis HOM05D004510 ORTHO05D005302 4.1e-45 184.9 123 76.4
Dinv22838 Davidia involucrata HOM05D004510 ORTHO05D005302 7.0e-45 184.1 108 84.3
Manes.11G162300 Manihot esculenta HOM05D004510 ORTHO05D005302 1.5e-44 183.0 109 83.5
COL.COLO4_19854 Corchorus olitorius HOM05D004510 ORTHO05D005302 3.5e-44 181.8 110 82.7
Haze_23369 Corylus avellana HOM05D004510 ORTHO05D005302 3.5e-44 181.8 108 82.4
Atru.chr3.3236 Acer truncatum HOM05D004510 ORTHO05D005302 5.9e-44 181.0 109 83.5
Thecc.09G282400 Theobroma cacao HOM05D004510 ORTHO05D005302 5.9e-44 181.0 110 83.6
Hma1.2p1_0587F.1_g184290 Hydrangea macrophylla HOM05D004510 ORTHO05D005302 1.0e-43 180.3 108 81.5
MELO3C004700.2 Cucumis melo HOM05D004510 ORTHO05D005302 1.7e-43 179.5 124 77.4
CsaV3_1G014870 Cucumis sativus L. HOM05D004510 ORTHO05D005302 1.7e-43 179.5 124 77.4
Sabra09G0127400 Salix brachista HOM05D004510 ORTHO05D005302 2.9e-43 178.7 109 79.8
Sed0027037 Sechium edule HOM05D004510 ORTHO05D005302 2.9e-43 178.7 108 82.4
Gohir.D08G015800 Gossypium hirsutum HOM05D004510 ORTHO05D005302 5.0e-43 177.9 110 80.9
Gorai.004G010100 Gossypium raimondii HOM05D004510 ORTHO05D005302 5.0e-43 177.9 110 80.9
Potri.009G163300 Populus trichocarpa HOM05D004510 ORTHO05D005302 6.5e-43 177.6 109 79.8
Gohir.A08G005400 Gossypium hirsutum HOM05D004510 ORTHO05D005302 8.5e-43 177.2 110 80.9
Potri.004G201800 Populus trichocarpa HOM05D004510 ORTHO05D005302 8.5e-43 177.2 109 79.8
TAR623G1468 Trochodendron aralioides HOM05D004510 ORTHO05D005302 1.1e-42 176.8 108 81.5
ClCG01G011880 Citrullus lanatus HOM05D004510 ORTHO05D005302 1.4e-42 176.4 108 81.5
Glyma.12G089700 Glycine max HOM05D004510 ORTHO05D005302 1.4e-42 176.4 108 80.6
THA.LOC104826427 Tarenaya hassleriana HOM05D004510 ORTHO05D005302 1.4e-42 176.4 108 80.6
CANSAT54G0764 Cannabis sativa HOM05D004510 ORTHO05D005302 1.9e-42 176.0 109 81.7
Sabra04G0136400 Salix brachista HOM05D004510 ORTHO05D005302 1.9e-42 176.0 108 79.6
Aa31LG5G8800 Aethionema arabicum HOM05D004510 ORTHO05D005302 2.5e-42 175.6 111 78.4
Glyma.11G182800 Glycine max HOM05D004510 ORTHO05D005302 2.5e-42 175.6 108 79.6
TPR.G17233 Trifolium pratense HOM05D004510 ORTHO05D005302 5.5e-42 174.5 110 78.2
Medtr4g052930 Medicago truncatula HOM05D004510 ORTHO05D005302 7.2e-42 174.1 110 78.2
Gohir.D05G083300 Gossypium hirsutum HOM05D004510 ORTHO05D005302 1.2e-41 173.3 110 80.0
Phvul.011G094800 Phaseolus vulgaris HOM05D004510 ORTHO05D005302 1.6e-41 172.9 108 78.7
GSVIVG01036116001 Vitis vinifera HOM05D004510 ORTHO05D005302 1.6e-41 172.9 108 79.6
Cpa.g.sc3326.1 Carica papaya HOM05D004510 ORTHO05D005302 2.1e-41 172.6 108 81.5
Lalb_Chr03g0028121 Lupinus albus HOM05D004510 ORTHO05D005302 3.6e-41 171.8 121 71.9
VMungo1127G0197 Vigna mungo HOM05D004510 ORTHO05D005302 3.6e-41 171.8 108 77.8
Rhsim13G0112600 Rhododendron simsii HOM05D004510 ORTHO05D005302 4.7e-41 171.4 129 69.0
Ciclev10027862m.g Citrus clementina HOM05D004510 ORTHO05D005302 6.1e-41 171.0 109 79.8
Gorai.009G085000 Gossypium raimondii HOM05D004510 ORTHO05D005302 1.0e-40 170.2 115 75.7
Psat7g187800 Pisum sativum HOM05D004510 ORTHO05D005302 1.8e-40 169.5 110 76.4
PGR102G0622 Punica granatum HOM05D004510 ORTHO05D005302 2.3e-40 169.1 105 78.1
CSS0020343 Camellia sinensis var. sinensis HOM05D004510 ORTHO05D005302 3.0e-40 168.7 108 75.9
Nn6g34880 Nelumbo nucifera HOM05D004510 ORTHO05D005302 3.0e-40 168.7 108 80.6
Ca_19411_v3 Cicer arietinum L. HOM05D004510 ORTHO05D005302 3.9e-40 168.3 110 75.5
Actinidia24221 Actinidia chinensis HOM05D004510 ORTHO05D005302 6.7e-40 167.5 108 75.9
CARHR120110 Cardamine hirsuta HOM05D004510 ORTHO05D005302 8.8e-40 167.2 110 75.5
Nitab4.5_0000755g0090 Nicotiana tabacum HOM05D004510 ORTHO05D005302 8.8e-40 167.2 108 78.7
Nitab4.5_0012235g0010 Nicotiana tabacum HOM05D004510 ORTHO05D005302 8.8e-40 167.2 108 78.7
arahy.Tifrunner.gnm1.ann1.CJK6JS Arachis hypogaea HOM05D004510 ORTHO05D005302 1.1e-39 166.8 107 77.6
Eucgr.B03845 Eucalyptus grandis HOM05D004510 ORTHO05D005302 1.1e-39 166.8 107 77.6
Lalb_Chr19g0136431 Lupinus albus HOM05D004510 ORTHO05D005302 1.1e-39 166.8 117 73.5
Sp4g10250 Schrenkiella parvula HOM05D004510 ORTHO05D005302 1.1e-39 166.8 110 75.5
Oeu035565.1 Olea europaea HOM05D004510 ORTHO05D005302 1.5e-39 166.4 108 75.0
Peaxi162Scf00040g00020 Petunia axillaris HOM05D004510 ORTHO05D005302 1.5e-39 166.4 108 78.7
THA.LOC104815723 Tarenaya hassleriana HOM05D004510 ORTHO05D005302 1.5e-39 166.4 108 77.8
AL4G21450 Arabidopsis lyrata HOM05D004510 ORTHO05D005302 2.0e-39 166.0 110 75.5
AT2G27460 Arabidopsis thaliana HOM05D004510 ORTHO05D005302 2.0e-39 166.0 110 75.5
arahy.Tifrunner.gnm1.ann1.G66SVD Arachis hypogaea HOM05D004510 ORTHO05D005302 2.0e-39 166.0 107 77.6
Lj3g0009034 Lotus japonicus HOM05D004510 ORTHO05D005302 2.6e-39 165.6 108 75.9
BolC4t27208H Brassica oleracea HOM05D004510 ORTHO05D005302 3.3e-39 165.2 110 74.5
Carub.0004s0808 Capsella rubella HOM05D004510 ORTHO05D005302 3.3e-39 165.2 110 74.5
EL10Ac7g15829 Beta vulgaris HOM05D004510 ORTHO05D005302 4.4e-39 164.9 109 77.1
Sc21g0007070 Simmondsia chinensis HOM05D004510 ORTHO05D005302 5.7e-39 164.5 108 77.8
BcaB02g10090 Brassica carinata HOM05D004510 ORTHO05D005302 7.4e-39 164.1 110 74.5
vmacro03323 Vaccinium macrocarpon HOM05D004510 ORTHO05D005302 7.4e-39 164.1 108 75.9
Solyc11g068500.2 Solanum lycopersicum HOM05D004510 ORTHO05D005302 9.7e-39 163.7 108 76.9
Sopen11g027210 Solanum pennellii HOM05D004510 ORTHO05D005302 9.7e-39 163.7 108 76.9
PGSC0003DMG400026338 Solanum tuberosum HOM05D004510 ORTHO05D005302 9.7e-39 163.7 108 76.9
A04p20970 Brassica napus HOM05D004510 ORTHO05D005302 1.3e-38 163.3 110 74.5
C04p56760 Brassica napus HOM05D004510 ORTHO05D005302 1.3e-38 163.3 110 74.5
BraA04t17666Z Brassica rapa HOM05D004510 ORTHO05D005302 1.3e-38 163.3 110 74.5
CAN.G1524.4 Capsicum annuum HOM05D004510 ORTHO05D005302 2.2e-38 162.5 107 76.6
Thhalv10016271m.g Eutrema salsugineum HOM05D004510 ORTHO05D005302 2.2e-38 162.5 110 72.7
Ah.08g215670 Amaranthus hybridus HOM05D004510 ORTHO05D005302 2.8e-38 162.2 109 76.1
AUR62036195 Chenopodium quinoa HOM05D004510 ORTHO05D005302 3.7e-38 161.8 109 76.1
BraA07t29538Z Brassica rapa HOM05D004510 ORTHO05D005302 4.8e-38 161.4 110 73.6
AUR62009750 Chenopodium quinoa HOM05D004510 ORTHO05D005302 6.3e-38 161.0 109 75.2
Cc01_g09050 Coffea canephora HOM05D004510 ORTHO05D005302 8.2e-38 160.6 108 72.2
A07p18220 Brassica napus HOM05D004510 ORTHO05D005302 1.4e-37 159.8 110 72.7
Hund18760 Selenicereus undatus HOM05D004510 ORTHO05D005302 1.8e-37 159.5 109 75.2
BcaC02g10877 Brassica carinata HOM05D004510 ORTHO05D005302 3.1e-37 158.7 110 72.7
C04p24140 Brassica napus HOM05D004510 ORTHO05D005302 3.1e-37 158.7 110 72.7
BolC4t23911H Brassica oleracea HOM05D004510 ORTHO05D005302 3.1e-37 158.7 110 72.7
CDE08G1408 Ceratophyllum demersum HOM05D004510 ORTHO05D005302 4.1e-37 158.3 108 72.2
DCAR_010345 Daucus carota HOM05D004510 ORTHO05D005302 4.1e-37 158.3 113 71.7
Aqoxy4G02763 Aquilegia oxysepala HOM05D004510 ORTHO05D005302 5.3e-37 157.9 108 75.0
PSO339G0142 Papaver somniferum HOM05D004510 ORTHO05D005302 5.3e-37 157.9 107 74.8
PSO384G2406 Papaver somniferum HOM05D004510 ORTHO05D005302 5.3e-37 157.9 107 74.8
CDE06G1114 Ceratophyllum demersum HOM05D004510 ORTHO05D005302 1.2e-36 156.8 108 70.4
ATR0776G017 Amborella trichopoda HOM05D004510 ORTHO05D005302 2.0e-36 156.0 108 72.2
HPP92_011904 Vanilla planifolia HOM05D004510 ORTHO05D005302 2.6e-36 155.6 105 74.3
Gohir.A05G080300 Gossypium hirsutum HOM05D004510 ORTHO05D005302 1.0e-35 153.7 121 66.9
ECA233G5657 Erigeron canadensis HOM05D004510 ORTHO05D005302 1.3e-35 153.3 108 72.2
HanXRQChr16g0526961 Helianthus annuus HOM05D004510 ORTHO05D005302 2.2e-35 152.5 108 71.3
SalBow3G0413 Salvia bowleyana HOM05D004510 ORTHO05D005302 2.2e-35 152.5 107 68.2
Lsat_1_v5_gn_6_38881 Lactuca sativa HOM05D004510 ORTHO05D005302 5.0e-35 151.4 108 73.1
SGA_v2.0_scaffold295G47522 Striga asiatica HOM05D004510 ORTHO05D005302 6.5e-35 151.0 108 68.5
SGA_v2.0_scaffold177G39411 Striga asiatica HOM05D004510 ORTHO05D005302 8.5e-35 150.6 108 66.7
Migut.N02488 Erythranthe guttata HOM05D004510 ORTHO05D005302 4.2e-34 148.3 109 64.2
HanXRQChr13g0397471 Helianthus annuus HOM05D004510 ORTHO05D005302 9.4e-34 147.1 108 68.5
SEGI_33849 Sequoiadendron giganteum HOM05D004510 ORTHO05D005302 1.4e-32 143.3 108 66.7
SHI33806 Sapria himalayana HOM05D000105 ORTHO05D000023 1.8e-32 142.9 107 66.4
unitig_8.g2975 Utricularia gibba HOM05D001558 ORTHO05D005302 2.6e-31 139.0 108 64.8
Mapoly0020s0029 Marchantia polymorpha HOM05D004510 ORTHO05D005302 2.8e-30 135.6 108 59.3
AagrBONN_evm.TU.Sc2ySwM_369.588 Anthoceros agrestis HOM05D004510 ORTHO05D005302 1.0e-27 127.1 137 48.9
TWI31G0469 Tripterygium wilfordii HOM05D004510 ORTHO05D005302 1.0e-27 127.1 108 64.8
CBR_g98 Chara braunii HOM05D004510 ORTHO05D005302 2.9e-27 125.6 115 54.8
Pp3c9_6480 Physcomitrium patens HOM05D004510 ORTHO05D005302 6.5e-27 124.4 105 58.1
Pp3c9_12900 Physcomitrium patens HOM05D004510 ORTHO05D005302 1.5e-26 123.2 105 57.1
Lj1C236G5 Lonicera japonica HOM05D004510 ORTHO05D005302 1.0e-24 117.1 241 36.1
Os05g0443300 Oryza sativa ssp. japonica HOM05D004510 ORTHO05D005302 1.8e-24 116.3 105 57.1
Zm00001eb288910 Zea mays HOM05D004510 ORTHO05D005302 2.0e-23 112.8 108 55.6
Zm00001eb348320 Zea mays HOM05D004510 ORTHO05D005302 2.0e-23 112.8 108 55.6
SMO119G0407 Selaginella moellendorffii HOM05D004510 ORTHO05D005302 3.4e-23 112.1 108 51.9
MBI17_g08333_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000003 2.8e-22 109.0 69 78.3
Os04g0412900 Oryza sativa ssp. japonica HOM05D004510 ORTHO05D005302 7.0e-21 104.4 123 48.8
Zm00001eb421940 Zea mays HOM05D004510 ORTHO05D005302 1.2e-20 103.6 108 51.9
PRCOL_00001783 Prasinoderma coloniale HOM05D004510 ORTHO05D005302 3.5e-20 102.1 116 44.8
MCO07G305 Micromonas commoda HOM05D004510 ORTHO05D005302 9.8e-15 84.0 104 42.3
Pp3c9_6470 Physcomitrium patens HOM05D004510 ORTHO05D005302 2.4e-13 79.3 68 57.4
Dinv42548 Davidia involucrata HOM05D004510 ORTHO05D005302 2.7e-12 75.9 41 87.8
Pp3c2_38440 Physcomitrium patens HOM05D004510 ORTHO05D005302 1.7e-11 73.2 100 42.0
Pp3c17_10 Physcomitrium patens HOM05D004510 ORTHO05D005302 4.3e-10 68.6 95 42.1
Pp3c23_90 Physcomitrium patens HOM05D004510 ORTHO05D005302 4.3e-10 68.6 95 42.1
Pp3c26_15780 Physcomitrium patens HOM05D004510 ORTHO05D005302 4.0e-08 62.0 96 39.6
CSS0032823 Camellia sinensis var. sinensis HOM05D000557 ORTHO05D005302 2.0e-07 59.7 54 57.4


User provided reference genes

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