Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0040981 Rosa chinensis HOM05D004510 ORTHO05D005302 2.8e-171 605.1 297 100.0
RcHm_v2.0_Chr5g0044841 Rosa chinensis HOM05D004510 ORTHO05D005302 8.8e-149 530.4 277 95.7
FAN21G2427 Fragaria x ananassa HOM05D004510 ORTHO05D005302 3.7e-147 525.0 288 91.0
FvH4_3g24980 Fragaria vesca HOM05D004510 ORTHO05D005302 4.1e-146 521.5 275 94.5
FAN16G1814 Fragaria x ananassa HOM05D004510 ORTHO05D005302 2.0e-145 519.2 275 93.8
FAN25G2046 Fragaria x ananassa HOM05D004510 ORTHO05D005302 1.0e-144 516.9 275 93.5
FAN11G3425 Fragaria x ananassa HOM05D004510 ORTHO05D005302 2.5e-143 512.3 275 93.8
MD03G1145900 Malus domestica HOM05D004510 ORTHO05D005302 5.7e-140 501.1 276 89.9
Prupe.6G130700 Prunus persica HOM05D004510 ORTHO05D005302 4.9e-139 498.0 276 89.1
RcHm_v2.0_Chr5g0045601 Rosa chinensis HOM05D004510 ORTHO05D005302 4.9e-139 498.0 267 93.3
COL.COLO4_19854 Corchorus olitorius HOM05D004510 ORTHO05D005302 1.5e-135 486.5 276 87.0
QL01p012154 Quercus lobata HOM05D004510 ORTHO05D005302 7.3e-135 484.2 274 87.2
CiPaw.13G135100 Carya illinoinensis HOM05D004510 ORTHO05D005302 2.1e-134 482.6 274 86.5
Thecc.09G282400 Theobroma cacao HOM05D004510 ORTHO05D005302 2.8e-134 482.3 276 87.0
Haze_23369 Corylus avellana HOM05D004510 ORTHO05D005302 1.4e-133 479.9 274 86.1
Gohir.D08G015800 Gossypium hirsutum HOM05D004510 ORTHO05D005302 2.3e-133 479.2 276 85.1
Gorai.004G010100 Gossypium raimondii HOM05D004510 ORTHO05D005302 2.3e-133 479.2 276 85.1
Duzib150G0176 Durio zibethinus HOM05D004510 ORTHO05D005302 3.0e-133 478.8 276 85.9
Gohir.A08G005400 Gossypium hirsutum HOM05D004510 ORTHO05D005302 4.0e-133 478.4 276 85.1
CANSAT54G0764 Cannabis sativa HOM05D004510 ORTHO05D005302 1.2e-132 476.9 275 85.5
Glyma.12G089700 Glycine max HOM05D004510 ORTHO05D005302 5.8e-132 474.6 274 85.0
ClCG01G011880 Citrullus lanatus HOM05D004510 ORTHO05D005302 7.5e-132 474.2 274 85.8
Manes.11G162300 Manihot esculenta HOM05D004510 ORTHO05D005302 1.3e-131 473.4 275 85.5
Phvul.011G094800 Phaseolus vulgaris HOM05D004510 ORTHO05D005302 2.2e-131 472.6 274 83.9
GSVIVG01036116001 Vitis vinifera HOM05D004510 ORTHO05D005302 2.2e-131 472.6 274 85.8
TPR.G17233 Trifolium pratense HOM05D004510 ORTHO05D005302 3.7e-131 471.9 288 81.2
VMungo1127G0197 Vigna mungo HOM05D004510 ORTHO05D005302 3.7e-131 471.9 274 83.6
Hma1.2p1_0587F.1_g184290 Hydrangea macrophylla HOM05D004510 ORTHO05D005302 6.4e-131 471.1 273 84.6
Glyma.11G182800 Glycine max HOM05D004510 ORTHO05D005302 8.3e-131 470.7 274 84.3
Medtr4g052930 Medicago truncatula HOM05D004510 ORTHO05D005302 1.1e-130 470.3 273 84.6
MELO3C004700.2 Cucumis melo HOM05D004510 ORTHO05D005302 1.9e-130 469.5 273 85.3
Potri.009G163300 Populus trichocarpa HOM05D004510 ORTHO05D005302 1.9e-130 469.5 275 84.0
Atru.chr3.3236 Acer truncatum HOM05D004510 ORTHO05D005302 2.4e-130 469.2 275 84.7
CsaV3_1G014870 Cucumis sativus L. HOM05D004510 ORTHO05D005302 2.4e-130 469.2 273 85.3
Sed0027037 Sechium edule HOM05D004510 ORTHO05D005302 2.4e-130 469.2 274 84.3
TAR623G1468 Trochodendron aralioides HOM05D004510 ORTHO05D005302 3.2e-130 468.8 274 84.3
Lj3g0009034 Lotus japonicus HOM05D004510 ORTHO05D005302 7.0e-130 467.6 274 83.6
Gohir.D05G083300 Gossypium hirsutum HOM05D004510 ORTHO05D005302 2.7e-129 465.7 276 84.1
Ca_19411_v3 Cicer arietinum L. HOM05D004510 ORTHO05D005302 6.0e-129 464.5 273 83.5
Psat7g187800 Pisum sativum HOM05D004510 ORTHO05D005302 6.0e-129 464.5 273 83.9
Potri.004G201800 Populus trichocarpa HOM05D004510 ORTHO05D005302 7.8e-129 464.2 275 84.0
PGR102G0622 Punica granatum HOM05D004510 ORTHO05D005302 1.3e-128 463.4 271 84.5
Sabra04G0136400 Salix brachista HOM05D004510 ORTHO05D005302 3.0e-128 462.2 274 83.2
Sabra09G0127400 Salix brachista HOM05D004510 ORTHO05D005302 3.0e-128 462.2 275 82.5
Lalb_Chr03g0028121 Lupinus albus HOM05D004510 ORTHO05D005302 3.9e-128 461.8 273 82.4
arahy.Tifrunner.gnm1.ann1.G66SVD Arachis hypogaea HOM05D004510 ORTHO05D005302 8.6e-128 460.7 273 83.2
Ciclev10027862m.g Citrus clementina HOM05D004510 ORTHO05D005302 8.6e-128 460.7 278 82.7
Nn6g34880 Nelumbo nucifera HOM05D004510 ORTHO05D005302 8.6e-128 460.7 274 84.3
arahy.Tifrunner.gnm1.ann1.CJK6JS Arachis hypogaea HOM05D004510 ORTHO05D005302 1.5e-127 459.9 273 82.8
CSS0020343 Camellia sinensis var. sinensis HOM05D004510 ORTHO05D005302 1.5e-127 459.9 284 78.9
Lalb_Chr19g0136431 Lupinus albus HOM05D004510 ORTHO05D005302 2.5e-127 459.1 273 82.8
Eucgr.B03845 Eucalyptus grandis HOM05D004510 ORTHO05D005302 3.3e-127 458.8 273 83.2
Rhsim13G0112600 Rhododendron simsii HOM05D004510 ORTHO05D005302 7.3e-127 457.6 277 80.5
Aa31LG5G8800 Aethionema arabicum HOM05D004510 ORTHO05D005302 1.6e-126 456.4 277 80.9
Actinidia24221 Actinidia chinensis HOM05D004510 ORTHO05D005302 5.2e-125 451.4 274 81.0
vmacro03323 Vaccinium macrocarpon HOM05D004510 ORTHO05D005302 1.2e-124 450.3 274 80.7
Peaxi162Scf00040g00020 Petunia axillaris HOM05D004510 ORTHO05D005302 5.8e-124 448.0 274 81.4
PSO339G0142 Papaver somniferum HOM05D004510 ORTHO05D005302 9.8e-124 447.2 273 80.2
Nitab4.5_0012235g0010 Nicotiana tabacum HOM05D004510 ORTHO05D005302 1.3e-123 446.8 274 80.3
Aqoxy4G02763 Aquilegia oxysepala HOM05D004510 ORTHO05D005302 1.7e-123 446.4 274 81.0
AUR62036195 Chenopodium quinoa HOM05D004510 ORTHO05D005302 1.7e-123 446.4 275 81.5
PSO384G2406 Papaver somniferum HOM05D004510 ORTHO05D005302 1.7e-123 446.4 273 79.5
CAN.G1524.4 Capsicum annuum HOM05D004510 ORTHO05D005302 2.2e-123 446.0 273 81.0
PGSC0003DMG400026338 Solanum tuberosum HOM05D004510 ORTHO05D005302 2.2e-123 446.0 274 81.4
Cc01_g09050 Coffea canephora HOM05D004510 ORTHO05D005302 2.9e-123 445.7 274 79.2
Nitab4.5_0000755g0090 Nicotiana tabacum HOM05D004510 ORTHO05D005302 2.9e-123 445.7 274 80.3
Sp4g10250 Schrenkiella parvula HOM05D004510 ORTHO05D005302 6.4e-123 444.5 276 79.3
AUR62009750 Chenopodium quinoa HOM05D004510 ORTHO05D005302 1.4e-122 443.4 275 80.7
Oeu035565.1 Olea europaea HOM05D004510 ORTHO05D005302 1.4e-122 443.4 274 79.6
Hund18760 Selenicereus undatus HOM05D004510 ORTHO05D005302 3.2e-122 442.2 275 79.6
CARHR120110 Cardamine hirsuta HOM05D004510 ORTHO05D005302 4.1e-122 441.8 276 78.3
THA.LOC104815723 Tarenaya hassleriana HOM05D004510 ORTHO05D005302 9.2e-122 440.7 274 78.8
Solyc11g068500.2 Solanum lycopersicum HOM05D004510 ORTHO05D005302 1.2e-121 440.3 274 79.9
Thhalv10016271m.g Eutrema salsugineum HOM05D004510 ORTHO05D005302 1.6e-121 439.9 276 77.5
MD11G1164800 Malus domestica HOM05D004510 ORTHO05D005302 1.6e-121 439.9 276 80.1
AT2G27460 Arabidopsis thaliana HOM05D004510 ORTHO05D005302 2.7e-121 439.1 276 77.5
Sopen11g027210 Solanum pennellii HOM05D004510 ORTHO05D005302 3.5e-121 438.7 274 79.6
Gorai.009G085000 Gossypium raimondii HOM05D004510 ORTHO05D005302 4.6e-121 438.3 278 80.2
AL4G21450 Arabidopsis lyrata HOM05D004510 ORTHO05D005302 1.0e-120 437.2 276 77.5
Carub.0004s0808 Capsella rubella HOM05D004510 ORTHO05D005302 1.3e-120 436.8 276 77.5
BraA07t29538Z Brassica rapa HOM05D004510 ORTHO05D005302 2.3e-120 436.0 276 77.5
THA.LOC104826427 Tarenaya hassleriana HOM05D004510 ORTHO05D005302 2.3e-120 436.0 275 78.2
Lsat_1_v5_gn_6_38881 Lactuca sativa HOM05D004510 ORTHO05D005302 3.0e-120 435.6 274 78.5
DCAR_010345 Daucus carota HOM05D004510 ORTHO05D005302 3.9e-120 435.3 274 79.6
BcaB02g10090 Brassica carinata HOM05D004510 ORTHO05D005302 5.1e-120 434.9 276 77.5
HanXRQChr16g0526961 Helianthus annuus HOM05D004510 ORTHO05D005302 5.1e-120 434.9 274 77.0
BcaC02g10877 Brassica carinata HOM05D004510 ORTHO05D005302 6.6e-120 434.5 276 77.5
BolC4t27208H Brassica oleracea HOM05D004510 ORTHO05D005302 8.6e-120 434.1 276 77.2
A04p20970 Brassica napus HOM05D004510 ORTHO05D005302 3.3e-119 432.2 276 77.2
C04p24140 Brassica napus HOM05D004510 ORTHO05D005302 3.3e-119 432.2 275 77.5
BolC4t23911H Brassica oleracea HOM05D004510 ORTHO05D005302 3.3e-119 432.2 275 77.5
BraA04t17666Z Brassica rapa HOM05D004510 ORTHO05D005302 3.3e-119 432.2 276 77.2
EL10Ac7g15829 Beta vulgaris HOM05D004510 ORTHO05D005302 7.3e-119 431.0 317 71.3
TWI31G0469 Tripterygium wilfordii HOM05D004510 ORTHO05D005302 7.3e-119 431.0 274 80.3
HPP92_011904 Vanilla planifolia HOM05D004510 ORTHO05D005302 7.3e-119 431.0 271 78.2
A07p18220 Brassica napus HOM05D004510 ORTHO05D005302 9.5e-119 430.6 276 76.4
C04p56760 Brassica napus HOM05D004510 ORTHO05D005302 1.2e-118 430.3 276 76.8
ATR0776G017 Amborella trichopoda HOM05D004510 ORTHO05D005302 1.6e-118 429.9 276 76.8
CDE06G1114 Ceratophyllum demersum HOM05D004510 ORTHO05D005302 2.1e-118 429.5 286 73.4
SalBow3G0413 Salvia bowleyana HOM05D004510 ORTHO05D005302 2.1e-118 429.5 272 77.2
ECA233G5657 Erigeron canadensis HOM05D004510 ORTHO05D005302 6.2e-118 427.9 274 77.0
HanXRQChr13g0397471 Helianthus annuus HOM05D004510 ORTHO05D005302 2.0e-116 422.9 274 74.8
Migut.N02488 Erythranthe guttata HOM05D004510 ORTHO05D005302 1.9e-114 416.4 274 74.5
SGA_v2.0_scaffold295G47522 Striga asiatica HOM05D004510 ORTHO05D005302 2.4e-114 416.0 274 74.5
SEGI_33849 Sequoiadendron giganteum HOM05D004510 ORTHO05D005302 5.6e-111 404.8 274 73.7
Lj1C236G5 Lonicera japonica HOM05D004510 ORTHO05D005302 2.1e-110 402.9 407 56.0
unitig_8.g2975 Utricularia gibba HOM05D001558 ORTHO05D005302 3.2e-106 389.0 272 70.6
CDE08G1408 Ceratophyllum demersum HOM05D004510 ORTHO05D005302 8.7e-104 380.9 254 72.8
Mapoly0020s0029 Marchantia polymorpha HOM05D004510 ORTHO05D005302 4.3e-103 378.6 274 66.8
Gohir.A05G080300 Gossypium hirsutum HOM05D004510 ORTHO05D005302 5.3e-101 371.7 283 69.6
SGA_v2.0_scaffold177G39411 Striga asiatica HOM05D004510 ORTHO05D005302 2.2e-99 366.3 273 67.4
Os05g0443300 Oryza sativa ssp. japonica HOM05D004510 ORTHO05D005302 1.2e-97 360.5 284 63.0
Zm00001eb288910 Zea mays HOM05D004510 ORTHO05D005302 3.5e-97 359.0 283 64.3
AagrBONN_evm.TU.Sc2ySwM_369.588 Anthoceros agrestis HOM05D004510 ORTHO05D005302 2.3e-96 356.3 275 63.3
Pp3c9_6480 Physcomitrium patens HOM05D004510 ORTHO05D005302 3.9e-96 355.5 271 64.9
Pp3c9_12900 Physcomitrium patens HOM05D004510 ORTHO05D005302 4.3e-95 352.1 271 64.2
Zm00001eb348320 Zea mays HOM05D004510 ORTHO05D005302 5.6e-95 351.7 274 64.2
SHI33806 Sapria himalayana HOM05D000105 ORTHO05D000023 8.1e-94 347.8 273 64.1
CBR_g98 Chara braunii HOM05D004510 ORTHO05D005302 1.9e-90 336.7 286 59.1
Sc21g0007070 Simmondsia chinensis HOM05D004510 ORTHO05D005302 1.2e-89 334.0 205 80.0
SMO119G0407 Selaginella moellendorffii HOM05D004510 ORTHO05D005302 1.6e-89 333.6 274 61.7
Pp3c9_6470 Physcomitrium patens HOM05D004510 ORTHO05D005302 1.1e-82 310.8 234 65.8
Os04g0412900 Oryza sativa ssp. japonica HOM05D004510 ORTHO05D005302 8.2e-78 294.7 281 55.5
Ah.08g215670 Amaranthus hybridus HOM05D004510 ORTHO05D005302 5.3e-77 292.0 275 60.4
Zm00001eb421940 Zea mays HOM05D004510 ORTHO05D005302 5.1e-72 275.4 272 52.6
Cpa.g.sc2302.1 Carica papaya HOM05D004510 ORTHO05D005302 2.0e-63 246.9 142 86.6
Dinv22838 Davidia involucrata HOM05D004510 ORTHO05D005302 3.8e-59 232.6 132 86.4
Cpa.g.sc3326.1 Carica papaya HOM05D004510 ORTHO05D005302 7.4e-55 218.4 132 82.6
RcHm_v2.0_Chr5g0044471 Rosa chinensis HOM05D004510 ORTHO05D005302 5.3e-53 212.2 110 95.5
MCO07G305 Micromonas commoda HOM05D004510 ORTHO05D005302 2.2e-51 206.8 281 39.1
PRCOL_00001783 Prasinoderma coloniale HOM05D004510 ORTHO05D005302 1.1e-50 204.5 290 40.3
MBI17_g08333_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000003 9.1e-37 158.3 96 80.2
CSS0032823 Camellia sinensis var. sinensis HOM05D000557 ORTHO05D005302 2.4e-21 107.1 80 65.0
BcaB01g01177 Brassica carinata HOM05D004510 ORTHO05D005302 1.4e-16 91.3 82 54.9
Pp3c2_38440 Physcomitrium patens HOM05D004510 ORTHO05D005302 4.6e-12 76.3 100 43.0
Dinv42548 Davidia involucrata HOM05D004510 ORTHO05D005302 6.0e-12 75.9 41 87.8
Pp3c17_10 Physcomitrium patens HOM05D004510 ORTHO05D005302 8.6e-11 72.0 95 43.2
Pp3c23_90 Physcomitrium patens HOM05D004510 ORTHO05D005302 8.6e-11 72.0 95 43.2
Pp3c26_15780 Physcomitrium patens HOM05D004510 ORTHO05D005302 1.1e-08 65.1 96 40.6


User provided reference genes

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