Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0040601 Rosa chinensis HOM05D006077 ORTHO05D007499 4.2e-36 154.1 73 100.0
RcHm_v2.0_Chr3g0490611 Rosa chinensis HOM05D006077 ORTHO05D007499 3.2e-28 127.9 71 84.5
FvH4_6g34660 Fragaria vesca HOM05D006077 ORTHO05D007499 4.2e-28 127.5 71 84.5
FAN09G3570 Fragaria x ananassa HOM05D006077 ORTHO05D007499 4.2e-28 127.5 71 84.5
FAN14G4463 Fragaria x ananassa HOM05D006077 ORTHO05D007499 4.2e-28 127.5 71 84.5
RcHm_v2.0_Chr2g0145211 Rosa chinensis HOM05D006077 ORTHO05D007499 4.2e-28 127.5 71 84.5
RcHm_v2.0_Chr5g0053491 Rosa chinensis HOM05D006077 ORTHO05D007499 7.2e-28 126.7 71 84.5
Thecc.06G119600 Theobroma cacao HOM05D006077 ORTHO05D007499 1.2e-27 125.9 71 83.1
GSVIVG01016766001 Vitis vinifera HOM05D006077 ORTHO05D007499 3.6e-27 124.4 71 81.7
CANSAT64G0122 Cannabis sativa HOM05D006077 ORTHO05D007499 1.0e-26 122.9 71 80.3
CANSAT64G2602 Cannabis sativa HOM05D006077 ORTHO05D007499 1.0e-26 122.9 71 80.3
CAN.G1368.2 Capsicum annuum HOM05D006077 ORTHO05D007499 1.4e-26 122.5 71 80.3
THA.LOC104822655 Tarenaya hassleriana HOM05D006077 ORTHO05D007499 1.8e-26 122.1 71 78.9
CiPaw.02G136000 Carya illinoinensis HOM05D006077 ORTHO05D007499 2.3e-26 121.7 71 78.9
PSO421G0038 Papaver somniferum HOM05D006077 ORTHO05D007499 2.3e-26 121.7 71 81.7
CARHR044580 Cardamine hirsuta HOM05D006077 ORTHO05D007499 3.0e-26 121.3 71 78.9
Haze_16030 Corylus avellana HOM05D006077 ORTHO05D007499 3.0e-26 121.3 71 80.3
Lj3g0010947 Lotus japonicus HOM05D006077 ORTHO05D007499 4.0e-26 120.9 71 78.9
Prupe.3G042200 Prunus persica HOM05D006077 ORTHO05D007499 5.2e-26 120.6 71 80.3
TAR636G2213 Trochodendron aralioides HOM05D006077 ORTHO05D007499 5.2e-26 120.6 71 80.3
Aa31LG8G1170 Aethionema arabicum HOM05D006077 ORTHO05D007499 6.8e-26 120.2 71 77.5
Gohir.A05G405800 Gossypium hirsutum HOM05D006077 ORTHO05D007499 6.8e-26 120.2 71 80.3
Gohir.D04G009800 Gossypium hirsutum HOM05D006077 ORTHO05D007499 6.8e-26 120.2 71 80.3
Gorai.012G011600 Gossypium raimondii HOM05D006077 ORTHO05D007499 6.8e-26 120.2 71 80.3
Hma1.2p1_0496F.1_g166240 Hydrangea macrophylla HOM05D006077 ORTHO05D007499 6.8e-26 120.2 70 77.1
BcaB07g33245 Brassica carinata HOM05D006077 ORTHO05D007499 1.2e-25 119.4 71 77.5
BcaB07g33246 Brassica carinata HOM05D006077 ORTHO05D007499 1.2e-25 119.4 71 77.5
BcaC08g43600 Brassica carinata HOM05D006077 ORTHO05D007499 1.2e-25 119.4 71 77.5
A06p00460 Brassica napus HOM05D006077 ORTHO05D007499 1.2e-25 119.4 71 77.5
C06p09980 Brassica napus HOM05D006077 ORTHO05D007499 1.2e-25 119.4 71 77.5
BolC6t36071H Brassica oleracea HOM05D006077 ORTHO05D007499 1.2e-25 119.4 71 77.5
BraA06t23260Z Brassica rapa HOM05D006077 ORTHO05D007499 1.2e-25 119.4 71 77.5
Solyc12g049310.2 Solanum lycopersicum HOM05D006077 ORTHO05D007499 1.2e-25 119.4 71 78.9
Sopen12g023790 Solanum pennellii HOM05D006077 ORTHO05D007499 1.2e-25 119.4 71 78.9
Actinidia26028 Actinidia chinensis HOM05D006077 ORTHO05D007499 1.5e-25 119.0 71 78.9
CSS0011852 Camellia sinensis var. sinensis HOM05D006077 ORTHO05D007499 1.5e-25 119.0 71 78.9
Migut.D00939 Erythranthe guttata HOM05D006077 ORTHO05D007499 1.5e-25 119.0 71 78.9
Thhalv10011896m.g Eutrema salsugineum HOM05D006077 ORTHO05D007499 1.5e-25 119.0 71 77.5
Rhsim08G0238900 Rhododendron simsii HOM05D006077 ORTHO05D007499 1.5e-25 119.0 71 78.9
ATR0598G320 Amborella trichopoda HOM05D006077 ORTHO05D007499 2.0e-25 118.6 71 78.9
AT1G54210 Arabidopsis thaliana HOM05D006077 ORTHO05D007499 2.0e-25 118.6 71 77.5
Carub.0001s4344 Capsella rubella HOM05D006077 ORTHO05D007499 2.0e-25 118.6 71 77.5
CDE11G1182 Ceratophyllum demersum HOM05D006077 ORTHO05D007499 2.0e-25 118.6 70 75.7
Glyma.07G038100 Glycine max HOM05D006077 ORTHO05D007499 2.0e-25 118.6 71 77.5
Hma1.2p1_0291F.1_g115130 Hydrangea macrophylla HOM05D006077 ORTHO05D007499 2.0e-25 118.6 71 77.5
Lalb_Chr01g0013591 Lupinus albus HOM05D006077 ORTHO05D007499 2.0e-25 118.6 71 77.5
Medtr8g020500 Medicago truncatula HOM05D006077 ORTHO05D007499 2.0e-25 118.6 71 77.5
PSO063G4040 Papaver somniferum HOM05D006077 ORTHO05D007499 2.0e-25 118.6 71 80.3
Phvul.010G130300 Phaseolus vulgaris HOM05D006077 ORTHO05D007499 2.0e-25 118.6 71 77.5
Psat4g182400 Pisum sativum HOM05D006077 ORTHO05D007499 2.0e-25 118.6 71 77.5
TPR.G32491 Trifolium pratense HOM05D006077 ORTHO05D007499 2.0e-25 118.6 71 77.5
TWI79G1574 Tripterygium wilfordii HOM05D006077 ORTHO05D007499 2.0e-25 118.6 71 78.9
Aqoxy7G01092 Aquilegia oxysepala HOM05D006077 ORTHO05D007499 2.6e-25 118.2 71 78.9
Dinv37869 Davidia involucrata HOM05D006077 ORTHO05D007499 2.6e-25 118.2 71 78.9
Glyma.16G007300 Glycine max HOM05D006077 ORTHO05D007499 2.6e-25 118.2 71 76.1
Peaxi162Scf00177g00511 Petunia axillaris HOM05D006077 ORTHO05D007499 2.6e-25 118.2 71 78.9
TWI75G1673 Tripterygium wilfordii HOM05D006077 ORTHO05D007499 2.6e-25 118.2 71 78.9
VMungo0331G1077 Vigna mungo HOM05D006077 ORTHO05D007499 5.7e-25 117.1 71 76.1
MD09G1183900 Malus domestica HOM05D006077 ORTHO05D007499 7.5e-25 116.7 71 76.1
CiPaw.01G218900 Carya illinoinensis HOM05D006077 ORTHO05D007499 9.8e-25 116.3 72 79.2
FAN05G2137 Fragaria x ananassa HOM05D006077 ORTHO05D007499 9.8e-25 116.3 64 84.4
Cc00_g21000 Coffea canephora HOM05D006077 ORTHO05D007499 1.3e-24 115.9 71 76.1
Manes.11G020500 Manihot esculenta HOM05D006077 ORTHO05D007499 1.3e-24 115.9 71 74.6
Hund05739 Selenicereus undatus HOM05D006077 ORTHO05D007499 1.3e-24 115.9 71 76.1
AL1G62920 Arabidopsis lyrata HOM05D006077 ORTHO05D007499 1.7e-24 115.5 71 76.1
SalBow6G4082 Salvia bowleyana HOM05D006077 ORTHO05D007499 1.7e-24 115.5 71 77.5
SalBow6G4389 Salvia bowleyana HOM05D006077 ORTHO05D007499 1.7e-24 115.5 71 77.5
AL3G26170 Arabidopsis lyrata HOM05D006077 ORTHO05D007499 2.2e-24 115.2 71 76.1
ECA232G1087 Erigeron canadensis HOM05D006077 ORTHO05D007499 2.2e-24 115.2 71 76.1
Sc15g0000510 Simmondsia chinensis HOM05D006077 ORTHO05D007499 2.8e-24 114.8 71 74.6
Carub.0003s1355 Capsella rubella HOM05D006077 ORTHO05D007499 4.9e-24 114.0 71 74.6
arahy.Tifrunner.gnm1.ann1.G5XP6S Arachis hypogaea HOM05D006077 ORTHO05D007499 8.3e-24 113.2 71 73.2
arahy.Tifrunner.gnm1.ann1.G7AU8E Arachis hypogaea HOM05D006077 ORTHO05D007499 8.3e-24 113.2 71 73.2
QL05p007703 Quercus lobata HOM05D006077 ORTHO05D007499 1.1e-23 112.8 63 81.0
Sp3g12220 Schrenkiella parvula HOM05D006077 ORTHO05D007499 1.1e-23 112.8 71 74.6
Eucgr.F03177 Eucalyptus grandis HOM05D006077 ORTHO05D007499 1.4e-23 112.5 71 76.1
Lsat_1_v5_gn_4_92920 Lactuca sativa HOM05D006077 ORTHO05D007499 4.1e-23 110.9 71 73.2
Os06g0205000 Oryza sativa ssp. japonica HOM05D006077 ORTHO05D007499 9.1e-23 109.8 71 69.0
Zm00001eb256700 Zea mays HOM05D006077 ORTHO05D007499 9.1e-23 109.8 71 70.4
Ah.08g216780 Amaranthus hybridus HOM05D006077 ORTHO05D007499 1.2e-22 109.4 71 70.4
AagrBONN_evm.TU.Sc2ySwM_228.485 Anthoceros agrestis HOM05D006077 ORTHO05D007499 1.2e-22 109.4 71 69.0
BcaC05g29136 Brassica carinata HOM05D006077 ORTHO05D007499 1.2e-22 109.4 71 73.2
A05p35440 Brassica napus HOM05D006077 ORTHO05D007499 1.2e-22 109.4 71 73.2
C05p53730 Brassica napus HOM05D006077 ORTHO05D007499 1.2e-22 109.4 71 73.2
BolC5t34043H Brassica oleracea HOM05D006077 ORTHO05D007499 1.2e-22 109.4 71 73.2
BraA05t22354Z Brassica rapa HOM05D006077 ORTHO05D007499 1.2e-22 109.4 71 73.2
Ciclev10026605m.g Citrus clementina HOM05D006077 ORTHO05D007499 1.6e-22 109.0 71 73.2
Potri.001G169700 Populus trichocarpa HOM05D006077 ORTHO05D007499 1.6e-22 109.0 71 69.0
SalBow6G7202 Salvia bowleyana HOM05D006077 ORTHO05D007499 2.0e-22 108.6 78 70.5
BcaB06g25414 Brassica carinata HOM05D006077 ORTHO05D007499 4.5e-22 107.5 71 70.4
Mapoly0025s0134 Marchantia polymorpha HOM05D006077 ORTHO05D007499 4.5e-22 107.5 71 69.0
Nn4g24846 Nelumbo nucifera HOM05D006077 ORTHO05D007499 5.9e-22 107.1 62 80.6
ClCG07G014030 Citrullus lanatus HOM05D006077 ORTHO05D007499 1.7e-21 105.5 71 66.2
MELO3C025809.2 Cucumis melo HOM05D006077 ORTHO05D007499 1.7e-21 105.5 71 66.2
CsaV3_3G043520 Cucumis sativus L. HOM05D006077 ORTHO05D007499 1.7e-21 105.5 71 66.2
Pp3c4_29920 Physcomitrium patens HOM05D006077 ORTHO05D007499 3.8e-21 104.4 71 66.2
Potri.003G064300 Populus trichocarpa HOM05D006077 ORTHO05D007499 5.0e-21 104.0 71 67.6
Sed0008411 Sechium edule HOM05D006077 ORTHO05D007499 1.5e-20 102.4 71 64.8
Sed0025034 Sechium edule HOM05D006077 ORTHO05D007499 1.9e-20 102.1 71 64.8
Manes.04G144301 Manihot esculenta HOM05D006077 ORTHO05D007499 2.8e-19 98.2 69 65.2
unitig_699.g19648 Utricularia gibba HOM05D002868 ORTHO05D003477 4.0e-18 94.4 59 72.9
vmacro15032 Vaccinium macrocarpon HOM05D006077 ORTHO05D007499 1.7e-16 89.0 65 72.3
CANSAT25G1718 Cannabis sativa HOM05D006077 ORTHO05D007499 2.8e-16 88.2 51 80.4
COL.COLO4_30761 Corchorus olitorius HOM05D006077 ORTHO05D007499 3.7e-16 87.8 51 80.4
CBR_g34185 Chara braunii HOM05D000019 ORTHO05D001702 6.3e-16 87.0 59 66.1
Duzib235G0120 Durio zibethinus HOM05D006077 ORTHO05D007499 1.4e-15 85.9 51 80.4
Oeu015484.1 Olea europaea HOM05D006077 ORTHO05D007499 4.1e-15 84.3 51 78.4
FAN02G4125 Fragaria x ananassa HOM05D006077 ORTHO05D007499 1.2e-14 82.8 75 61.3
SGA_v2.0_scaffold4G02063 Striga asiatica HOM05D006077 ORTHO05D007499 2.0e-14 82.0 70 58.6
Duzib192G0164 Durio zibethinus HOM05D006077 ORTHO05D007499 2.7e-14 81.6 51 76.5
SMO364G0450 Selaginella moellendorffii HOM05D006077 ORTHO05D007499 2.7e-14 81.6 70 52.9
CARHR088790 Cardamine hirsuta HOM05D006077 ORTHO05D007499 4.6e-14 80.9 51 74.5
AUR62009882 Chenopodium quinoa HOM05D006077 ORTHO05D007499 4.6e-14 80.9 53 67.9
EL10Ac7g16407 Beta vulgaris HOM05D006077 ORTHO05D007499 2.3e-13 78.6 51 68.6
HPP92_019155 Vanilla planifolia HOM05D006077 ORTHO05D007499 2.3e-13 78.6 51 70.6
PGSC0003DMG400011604 Solanum tuberosum HOM05D006077 ORTHO05D007499 1.5e-12 75.9 45 73.3
Sabra03G0038000 Salix brachista HOM05D006077 ORTHO05D007499 1.9e-12 75.5 51 66.7
Nitab4.5_0000189g0210 Nicotiana tabacum HOM05D006077 ORTHO05D007499 5.6e-12 73.9 41 78.0
Nitab4.5_0001199g0100 Nicotiana tabacum HOM05D006077 ORTHO05D007499 5.6e-12 73.9 41 78.0
DCAR_022696 Daucus carota HOM05D006077 ORTHO05D007499 1.4e-10 69.3 58 58.6
Thhalv10021863m.g Eutrema salsugineum HOM05D006077 ORTHO05D007499 1.4e-10 69.3 41 73.2
PRCOL_00003774 Prasinoderma coloniale HOM05D006077 ORTHO05D007499 1.8e-10 68.9 71 40.8
MCO16G375 Micromonas commoda HOM05D006077 ORTHO05D007499 1.5e-09 65.9 76 46.1
Atru.chr1.3943 Acer truncatum HOM05D006077 ORTHO05D007499 4.4e-09 64.3 40 75.0
Cre12.g557000 Chlamydomonas reinhardtii HOM05D006077 ORTHO05D007499 3.2e-07 58.2 71 38.0


User provided reference genes

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