Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0039261 Rosa chinensis HOM05D003876 ORTHO05D004560 0.0e+00 5062.3 2562 100.0
FvH4_3g22520 Fragaria vesca HOM05D003876 ORTHO05D004560 0.0e+00 4216.8 2565 84.8
FAN21G1021 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 3926.7 2539 80.7
FAN16G2970 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 3672.1 2539 76.5
FAN11G2639 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 3582.7 2505 76.0
Prupe.4G211600 Prunus persica HOM05D003876 ORTHO05D004560 0.0e+00 3367.4 2605 68.7
MD03G1202300 Malus domestica HOM05D003876 ORTHO05D004560 0.0e+00 3253.8 2601 66.4
QL11p042372 Quercus lobata HOM05D003876 ORTHO05D004560 0.0e+00 2781.5 2624 57.5
CANSAT21G0957 Cannabis sativa HOM05D003876 ORTHO05D004560 0.0e+00 2608.9 2610 54.8
CiPaw.11G188300 Carya illinoinensis HOM05D003876 ORTHO05D004560 0.0e+00 2604.7 2620 55.0
Haze_09664 Corylus avellana HOM05D003876 ORTHO05D004560 0.0e+00 2583.5 2673 53.8
Dinv12032 Davidia involucrata HOM05D003876 ORTHO05D004560 0.0e+00 2542.3 2617 52.9
Potri.001G423600 Populus trichocarpa HOM05D003876 ORTHO05D004560 0.0e+00 2533.8 2617 53.2
Dinv31299 Davidia involucrata HOM05D003876 ORTHO05D004560 0.0e+00 2521.5 2624 52.5
Atru.chr2.3354 Acer truncatum HOM05D003876 ORTHO05D004560 0.0e+00 2498.4 2622 53.2
Manes.15G088800 Manihot esculenta HOM05D003876 ORTHO05D004560 0.0e+00 2454.9 2615 52.0
Duzib213G0609 Durio zibethinus HOM05D003876 ORTHO05D004560 0.0e+00 2427.5 2602 52.3
Gorai.009G353000 Gossypium raimondii HOM05D003876 ORTHO05D004560 0.0e+00 2355.9 2625 50.5
TWI38G0366 Tripterygium wilfordii HOM05D003876 ORTHO05D004560 0.0e+00 2332.4 2636 50.0
TAR626G1614 Trochodendron aralioides HOM05D003876 ORTHO05D004560 0.0e+00 2299.2 2646 49.4
Gohir.D05G329600 Gossypium hirsutum HOM05D003876 ORTHO05D004560 0.0e+00 2298.9 2625 49.6
Lalb_Chr15g0081151 Lupinus albus HOM05D003876 ORTHO05D004560 0.0e+00 2261.1 2585 48.8
GSVIVG01037632001 Vitis vinifera HOM05D003876 ORTHO05D004560 0.0e+00 2248.4 2693 48.6
Hma1.2p1_1458F.1_g284750 Hydrangea macrophylla HOM05D003876 ORTHO05D004560 0.0e+00 2185.6 2683 47.0
Rhsim03G0118500 Rhododendron simsii HOM05D003876 ORTHO05D004560 0.0e+00 2185.6 2734 47.1
Hma1.2p1_1927F.1_g307790 Hydrangea macrophylla HOM05D003876 ORTHO05D004560 0.0e+00 2179.8 2619 47.9
PGR031G0089 Punica granatum HOM05D003876 ORTHO05D004560 0.0e+00 2167.5 2604 47.8
Thecc.07G169600 Theobroma cacao HOM05D003876 ORTHO05D004560 0.0e+00 2142.9 2254 52.5
Glyma.08G316100 Glycine max HOM05D003876 ORTHO05D004560 0.0e+00 2100.1 2600 46.0
Eucgr.F03461 Eucalyptus grandis HOM05D003876 ORTHO05D004560 0.0e+00 2095.9 2622 46.2
arahy.Tifrunner.gnm1.ann1.CB0JBU Arachis hypogaea HOM05D003876 ORTHO05D004560 0.0e+00 2088.2 2622 44.9
Ca_01714_v3 Cicer arietinum L. HOM05D003876 ORTHO05D004560 0.0e+00 2084.3 2619 45.7
ClCG09G008390 Citrullus lanatus HOM05D003876 ORTHO05D004560 0.0e+00 2072.7 2598 46.5
vmacro22462 Vaccinium macrocarpon HOM05D003876 ORTHO05D004560 0.0e+00 2071.6 2612 47.3
arahy.Tifrunner.gnm1.ann1.S1L982 Arachis hypogaea HOM05D003876 ORTHO05D004560 0.0e+00 2052.7 2593 44.8
MELO3C021122.2 Cucumis melo HOM05D003876 ORTHO05D004560 0.0e+00 2051.6 2597 46.6
TPR.G34799 Trifolium pratense HOM05D003876 ORTHO05D004560 0.0e+00 2050.4 2612 45.1
Medtr3g051730 Medicago truncatula HOM05D003876 ORTHO05D004560 0.0e+00 2050.0 2613 45.1
Sed0026666 Sechium edule HOM05D003876 ORTHO05D004560 0.0e+00 2048.9 2600 45.5
CsaV3_7G026680 Cucumis sativus L. HOM05D003876 ORTHO05D004560 0.0e+00 2043.5 2593 46.4
Psat7g030440 Pisum sativum HOM05D003876 ORTHO05D004560 0.0e+00 2040.8 2597 45.6
Cc02_g11170 Coffea canephora HOM05D003876 ORTHO05D004560 0.0e+00 2013.0 2600 44.9
THA.LOC104817664 Tarenaya hassleriana HOM05D003876 ORTHO05D004560 0.0e+00 1991.9 2622 44.7
Lj6g0024588 Lotus japonicus HOM05D003876 ORTHO05D004560 0.0e+00 1983.0 2572 45.3
Nn1g07120 Nelumbo nucifera HOM05D003876 ORTHO05D004560 0.0e+00 1956.4 2386 47.6
Aa31LG5G10400 Aethionema arabicum HOM05D003876 ORTHO05D004560 0.0e+00 1953.7 2608 44.4
AL7G25820 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 1926.8 2604 44.1
Sc07g0002730 Simmondsia chinensis HOM05D003876 ORTHO05D004560 0.0e+00 1922.5 2615 43.6
Aqoxy1G03250 Aquilegia oxysepala HOM05D003876 ORTHO05D004560 0.0e+00 1920.2 2664 43.2
Cpa.g.sc25.33 Carica papaya HOM05D003876 ORTHO05D004560 0.0e+00 1917.1 2552 45.1
CAN.G93.17 Capsicum annuum HOM05D003876 ORTHO05D004560 0.0e+00 1907.9 2619 43.6
Peaxi162Scf01227g00036 Petunia axillaris HOM05D003876 ORTHO05D004560 0.0e+00 1887.1 2608 43.1
Sopen02g015700 Solanum pennellii HOM05D003876 ORTHO05D004560 0.0e+00 1878.6 2599 43.3
AT4G27010 Arabidopsis thaliana HOM05D003876 ORTHO05D004560 0.0e+00 1871.7 2638 42.5
MSTRG.9162 Avicennia marina HOM05D003876 ORTHO05D004560 0.0e+00 1867.4 2608 42.6
EL10Ac4g07826 Beta vulgaris HOM05D003876 ORTHO05D004560 0.0e+00 1828.9 2617 42.3
SalBow4G0850 Salvia bowleyana HOM05D003876 ORTHO05D004560 0.0e+00 1819.7 2620 42.4
PSO675G8409 Papaver somniferum HOM05D003876 ORTHO05D004560 0.0e+00 1815.4 2665 41.6
AUR62020460 Chenopodium quinoa HOM05D003876 ORTHO05D004560 0.0e+00 1813.9 2686 41.9
PSO541G2928 Papaver somniferum HOM05D003876 ORTHO05D004560 0.0e+00 1812.7 2680 41.7
SGA_v2.0_scaffold13G06370 Striga asiatica HOM05D003876 ORTHO05D004560 0.0e+00 1801.9 2601 41.5
Sp7g24970 Schrenkiella parvula HOM05D003876 ORTHO05D004560 0.0e+00 1800.0 2673 42.0
SalBow4G0132 Salvia bowleyana HOM05D003876 ORTHO05D004560 0.0e+00 1798.1 2675 41.7
HanXRQChr14g0456751 Helianthus annuus HOM05D003876 ORTHO05D004560 0.0e+00 1795.4 2604 42.8
Hund02060 Selenicereus undatus HOM05D003876 ORTHO05D004560 0.0e+00 1786.2 2646 41.8
AUR62015755 Chenopodium quinoa HOM05D003876 ORTHO05D004560 0.0e+00 1775.8 2642 41.9
MBI16_g24182_MAGBIO Magnolia biondii HOM05D003876 ORTHO05D004560 0.0e+00 1771.1 2686 40.7
Oeu042740.2 Olea europaea HOM05D003876 ORTHO05D004560 0.0e+00 1771.1 2778 40.1
Ciclev10007236m.g Citrus clementina HOM05D003876 ORTHO05D004560 0.0e+00 1755.7 1801 53.6
ECA238G2706 Erigeron canadensis HOM05D003876 ORTHO05D004560 0.0e+00 1753.0 2560 42.2
Thhalv10024185m.g Eutrema salsugineum HOM05D003876 ORTHO05D004560 0.0e+00 1734.2 2445 42.7
C01p23130 Brassica napus HOM05D003876 ORTHO05D004560 0.0e+00 1722.6 2613 41.6
BolC1t02247H Brassica oleracea HOM05D003876 ORTHO05D004560 0.0e+00 1704.5 2642 40.7
Lsat_1_v5_gn_2_112761 Lactuca sativa HOM05D003876 ORTHO05D004560 0.0e+00 1703.3 2571 41.7
A01p18170 Brassica napus HOM05D003876 ORTHO05D004560 0.0e+00 1697.9 2621 41.1
Glyma.18G096800 Glycine max HOM05D003876 ORTHO05D004560 0.0e+00 1694.5 2139 45.8
BraA01t01772Z Brassica rapa HOM05D003876 ORTHO05D004560 0.0e+00 1684.5 2654 40.6
AL1G51930 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 1609.0 2590 39.9
Ah.14g087580 Amaranthus hybridus HOM05D003876 ORTHO05D004560 0.0e+00 1592.0 2598 39.1
Migut.F01968 Erythranthe guttata HOM05D003876 ORTHO05D004560 0.0e+00 1584.3 2594 38.5
Thhalv10009735m.g Eutrema salsugineum HOM05D003876 ORTHO05D004560 0.0e+00 1583.9 2613 39.4
Phvul.006G043300 Phaseolus vulgaris HOM05D003876 ORTHO05D004560 0.0e+00 1541.9 2038 43.7
AL1G52050 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 1528.8 2581 38.9
Migut.D01652 Erythranthe guttata HOM05D003876 ORTHO05D004560 0.0e+00 1525.0 2363 40.1
AT1G72270 Arabidopsis thaliana HOM05D003876 ORTHO05D004560 0.0e+00 1490.7 2568 38.2
DCAR_015293 Daucus carota HOM05D003876 ORTHO05D004560 0.0e+00 1485.3 2063 43.2
Nitab4.5_0000071g0230 Nicotiana tabacum HOM05D003876 ORTHO05D004560 0.0e+00 1477.2 2290 40.3
Carub.0007s1383 Capsella rubella HOM05D003876 ORTHO05D004560 0.0e+00 1465.3 2188 40.4
Gohir.A05G328600 Gossypium hirsutum HOM05D003876 ORTHO05D004560 0.0e+00 1453.7 1749 47.4
Zm00001eb070180 Zea mays HOM05D003876 ORTHO05D004560 0.0e+00 1442.2 2666 36.8
Solyc02g065500.4 Solanum lycopersicum HOM05D003876 ORTHO05D004560 0.0e+00 1379.8 2047 40.6
ATR0752G176 Amborella trichopoda HOM05D003876 ORTHO05D004560 0.0e+00 1320.4 2367 36.6
Carub.0004s0902 Capsella rubella HOM05D003876 ORTHO05D004560 0.0e+00 1292.7 2219 37.9
SHI26626 Sapria himalayana HOM05D003876 ORTHO05D004560 0.0e+00 1204.5 2141 38.2
BcaNung03576 Brassica carinata HOM05D003876 ORTHO05D004560 0.0e+00 1203.0 2482 34.9
Lj4A311T24 Lonicera japonica HOM05D003876 ORTHO05D004560 0.0e+00 1154.4 1809 40.4
Nitab4.5_0014432g0010 Nicotiana tabacum HOM05D003876 ORTHO05D004560 0.0e+00 1107.4 1713 39.9
CSS0014906 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 1.6e-238 831.6 919 50.4
Lj4C311T3 Lonicera japonica HOM05D003876 ORTHO05D004560 5.5e-231 806.6 779 57.0
COL.COLO4_07980 Corchorus olitorius HOM05D003876 ORTHO05D004560 3.2e-215 754.2 812 50.7
CARHR234630 Cardamine hirsuta HOM05D003876 ORTHO05D004560 4.2e-215 753.8 1256 38.4
Mapoly0015s0081 Marchantia polymorpha HOM05D003876 ORTHO05D004560 6.6e-192 676.8 2704 25.6
CDE12G0710 Ceratophyllum demersum HOM05D003876 ORTHO05D004560 6.4e-187 660.2 2556 26.3
HPP92_009566 Vanilla planifolia HOM05D003876 ORTHO05D004560 3.5e-185 654.4 1157 36.8
Pp3c2_30140 Physcomitrium patens HOM05D003876 ORTHO05D004560 1.7e-176 625.5 2775 25.5
COL.COLO4_07981 Corchorus olitorius HOM05D003876 ORTHO05D004560 7.3e-175 620.2 625 57.0
CSS0021387 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 1.2e-172 612.8 558 59.3
Lj4C310T3 Lonicera japonica HOM05D003876 ORTHO05D004560 6.4e-163 580.5 1158 35.1
AagrBONN_evm.TU.Sc2ySwM_362.592 Anthoceros agrestis HOM05D003876 ORTHO05D004560 1.4e-162 579.3 2822 25.4
SMO146G0332 Selaginella moellendorffii HOM05D003876 ORTHO05D004560 1.9e-154 552.4 2578 25.5
VMungo0540G1458 Vigna mungo HOM05D003876 ORTHO05D004560 3.0e-152 545.0 602 49.8
AL2G26020 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 1.3e-150 539.7 727 43.2
Rhsim09G0102800 Rhododendron simsii HOM05D003876 ORTHO05D005443 4.5e-148 531.2 1142 34.5
Ciclev10007711m.g Citrus clementina HOM05D003876 ORTHO05D004560 1.2e-140 506.5 555 53.2
VMungo0540G0476 Vigna mungo HOM05D003876 ORTHO05D004560 5.0e-131 474.6 533 49.3
HPP92_009565 Vanilla planifolia HOM05D003876 ORTHO05D004560 1.1e-130 473.4 748 41.2
SEGI_24019 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 1.0e-128 466.8 915 35.1
CARHR233850 Cardamine hirsuta HOM05D003876 ORTHO05D004560 1.0e-120 440.3 865 34.6
Lj4A310T24 Lonicera japonica HOM05D003876 ORTHO05D004560 1.1e-117 430.3 650 42.3
CSS0042398 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 4.5e-108 398.3 422 51.9
CARHR234640 Cardamine hirsuta HOM05D003876 ORTHO05D004560 4.0e-104 385.2 497 44.7
Haze_08116 Corylus avellana HOM05D003876 ORTHO05D004560 8.3e-102 377.5 318 63.8
RcHm_v2.0_Chr5g0039221 Rosa chinensis HOM05D003876 ORTHO05D004560 2.7e-97 362.5 202 89.1
SEGI_05754 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 1.2e-95 357.1 697 35.0
BcaNung03573 Brassica carinata HOM05D003876 ORTHO05D004560 3.1e-93 349.0 340 56.8
CARHR229820 Cardamine hirsuta HOM05D003876 ORTHO05D004560 2.8e-89 335.9 463 45.6
Ciclev10007833m.g Citrus clementina HOM05D003876 ORTHO05D004560 1.2e-68 267.3 385 42.3
RcHm_v2.0_Chr5g0039171 Rosa chinensis HOM05D003876 ORTHO05D004560 1.9e-66 260.0 155 89.0
FAN25G0312 Fragaria x ananassa HOM05D003876 ORTHO05D004560 3.3e-58 232.6 125 91.2
AL1048U10010 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 1.4e-53 217.2 492 32.3
Ca_01853_v3 Cicer arietinum L. HOM05D003876 ORTHO05D004560 2.8e-49 203.0 184 61.4
Gohir.A05G328616 Gossypium hirsutum HOM05D003876 ORTHO05D004560 3.6e-49 202.6 219 53.0
Psat3g160280 Pisum sativum HOM05D003876 ORTHO05D004560 6.2e-49 201.8 349 36.1
Os04g0625300 Oryza sativa ssp. japonica HOM05D003876 ORTHO05D004560 5.8e-47 195.3 350 34.3
Glyma.02G172300 Glycine max HOM05D003876 ORTHO05D004560 7.1e-45 188.3 183 53.6
Gohir.A05G328608 Gossypium hirsutum HOM05D003876 ORTHO05D004560 5.6e-42 178.7 140 64.3
CARHR229800 Cardamine hirsuta HOM05D003876 ORTHO05D004560 1.1e-40 174.5 329 35.3
Lj4A310G25 Lonicera japonica HOM05D003876 ORTHO05D004560 1.8e-40 173.7 233 44.2
Nn004s41399 Nelumbo nucifera HOM05D003876 ORTHO05D004560 6.9e-40 171.8 239 44.4
CBR_g48672 Chara braunii HOM05D003876 ORTHO05D004560 3.8e-38 166.0 448 29.9
SHI26628 Sapria himalayana HOM05D003876 ORTHO05D004560 7.4e-34 151.8 349 32.4
SEGI_37008 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 2.8e-33 149.8 299 35.5
RcHm_v2.0_Chr5g0039541 Rosa chinensis HOM05D003876 ORTHO05D004560 5.8e-31 142.1 70 98.6
SHI26627 Sapria himalayana HOM05D003876 ORTHO05D004560 1.3e-30 141.0 119 56.3
CARHR229810 Cardamine hirsuta HOM05D003876 ORTHO05D004560 6.0e-28 132.1 364 28.8
ATR0752G210 Amborella trichopoda HOM05D003876 ORTHO05D004560 1.8e-27 130.6 238 39.1
Os04g0625350 Oryza sativa ssp. japonica HOM05D003876 ORTHO05D004560 3.9e-27 129.4 169 45.6
Zm00001eb004360 Zea mays HOM05D003876 ORTHO05D000530 6.9e-24 118.6 140 44.3
MCO01G437 Micromonas commoda HOM05D003876 ORTHO05D004560 1.4e-21 110.9 384 26.3
SEGI_11631 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 1.0e-19 104.8 409 27.1
QL08p011039 Quercus lobata HOM05D003876 ORTHO05D004560 1.6e-17 97.4 106 52.8
Thecc.07G167900 Theobroma cacao HOM05D003876 ORTHO05D004560 2.8e-17 96.7 343 27.1
HPP92_009518 Vanilla planifolia HOM05D003876 ORTHO05D004560 4.1e-16 92.8 124 41.1
Atru.chr2.3366 Acer truncatum HOM05D003876 ORTHO05D004560 5.0e-14 85.9 114 39.5
QL08p010601 Quercus lobata HOM05D003876 ORTHO05D004560 5.0e-14 85.9 102 46.1
QL08p010686 Quercus lobata HOM05D003876 ORTHO05D004560 1.4e-13 84.3 71 60.6
PSO478G0467 Papaver somniferum HOM05D003876 ORTHO05D004560 1.9e-13 84.0 115 40.9
Psat1g105760 Pisum sativum HOM05D003876 ORTHO05D004560 1.9e-13 84.0 115 44.3
Cre02.g074300 Chlamydomonas reinhardtii HOM05D003876 ORTHO05D004560 4.2e-13 82.8 343 22.4
Nitab4.5_0014432g0020 Nicotiana tabacum HOM05D003876 ORTHO05D004560 7.2e-13 82.0 67 62.7
Zm00001eb254380 Zea mays HOM05D002934 ORTHO05D004560 2.1e-12 80.5 122 40.2
Zm00001eb276420 Zea mays HOM05D002934 ORTHO05D004560 2.1e-12 80.5 122 40.2
SEGI_19037 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 6.1e-12 79.0 157 36.9
MELO3C029177.2 Cucumis melo HOM05D003876 ORTHO05D004560 2.3e-11 77.0 127 33.1
Psat7g035480 Pisum sativum HOM05D003876 ORTHO05D004560 1.5e-10 74.3 145 33.8
QL08p010925 Quercus lobata HOM05D003876 ORTHO05D004560 2.2e-09 70.5 55 65.5
SEGI_30448 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 3.7e-09 69.7 239 25.9
Psat7g202680 Pisum sativum HOM05D003876 ORTHO05D004560 4.8e-09 69.3 81 43.2
QL08p010874 Quercus lobata HOM05D003876 ORTHO05D004560 6.3e-09 68.9 55 63.6
QL08p010640 Quercus lobata HOM05D003876 ORTHO05D004560 8.2e-09 68.6 61 59.0
SEGI_04455 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 2.4e-08 67.0 108 32.4
QL08p010959 Quercus lobata HOM05D003876 ORTHO05D004560 5.3e-08 65.9 47 70.2
QL10p036392 Quercus lobata HOM05D003876 ORTHO05D004560 5.3e-08 65.9 55 61.8
QL08p010650 Quercus lobata HOM05D003876 ORTHO05D004560 6.9e-08 65.5 55 61.8
QL10p036338 Quercus lobata HOM05D003876 ORTHO05D004560 6.9e-08 65.5 55 61.8


User provided reference genes

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