Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0039171 Rosa chinensis HOM05D003876 ORTHO05D004560 2.9e-85 318.5 165 100.0
RcHm_v2.0_Chr5g0039261 Rosa chinensis HOM05D003876 ORTHO05D004560 2.8e-67 258.8 155 89.0
RcHm_v2.0_Chr5g0039221 Rosa chinensis HOM05D003876 ORTHO05D004560 5.2e-66 254.6 150 89.3
FvH4_3g22520 Fragaria vesca HOM05D003876 ORTHO05D004560 2.3e-58 229.2 155 81.9
FAN11G2639 Fragaria x ananassa HOM05D003876 ORTHO05D004560 1.7e-56 223.0 149 82.6
FAN16G2970 Fragaria x ananassa HOM05D003876 ORTHO05D004560 3.7e-56 221.9 149 81.9
FAN21G1021 Fragaria x ananassa HOM05D003876 ORTHO05D004560 3.5e-54 215.3 149 79.2
Prupe.4G211600 Prunus persica HOM05D003876 ORTHO05D004560 6.4e-48 194.5 154 66.9
MD03G1202300 Malus domestica HOM05D003876 ORTHO05D004560 4.9e-40 168.3 149 59.7
Haze_09664 Corylus avellana HOM05D003876 ORTHO05D004560 1.0e-29 134.0 148 52.0
QL11p042372 Quercus lobata HOM05D003876 ORTHO05D004560 7.3e-28 127.9 142 49.3
Lalb_Chr15g0081151 Lupinus albus HOM05D003876 ORTHO05D004560 1.4e-26 123.6 152 46.7
Potri.001G423600 Populus trichocarpa HOM05D003876 ORTHO05D004560 1.8e-26 123.2 150 45.3
CANSAT21G0957 Cannabis sativa HOM05D003876 ORTHO05D004560 2.0e-25 119.8 150 48.7
CiPaw.11G188300 Carya illinoinensis HOM05D003876 ORTHO05D004560 7.6e-25 117.9 148 51.4
Psat7g030440 Pisum sativum HOM05D003876 ORTHO05D004560 9.9e-25 117.5 148 46.6
GSVIVG01037632001 Vitis vinifera HOM05D003876 ORTHO05D004560 2.9e-24 115.9 158 47.5
Dinv12032 Davidia involucrata HOM05D003876 ORTHO05D004560 6.4e-24 114.8 154 46.1
Dinv31299 Davidia involucrata HOM05D003876 ORTHO05D004560 6.4e-24 114.8 154 46.1
TWI38G0366 Tripterygium wilfordii HOM05D003876 ORTHO05D004560 9.3e-23 110.9 154 46.8
Hma1.2p1_1927F.1_g307790 Hydrangea macrophylla HOM05D003876 ORTHO05D004560 1.2e-22 110.5 138 45.7
CSS0014906 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 2.1e-22 109.8 154 44.2
TPR.G34799 Trifolium pratense HOM05D003876 ORTHO05D004560 2.7e-22 109.4 150 43.3
arahy.Tifrunner.gnm1.ann1.S1L982 Arachis hypogaea HOM05D003876 ORTHO05D004560 1.3e-21 107.1 151 43.0
Glyma.08G316100 Glycine max HOM05D003876 ORTHO05D004560 1.3e-21 107.1 151 41.7
Manes.15G088800 Manihot esculenta HOM05D003876 ORTHO05D004560 3.0e-21 105.9 143 43.4
Lj6g0024588 Lotus japonicus HOM05D003876 ORTHO05D004560 3.9e-21 105.5 148 43.2
Rhsim03G0118500 Rhododendron simsii HOM05D003876 ORTHO05D004560 3.9e-21 105.5 151 44.4
TAR626G1614 Trochodendron aralioides HOM05D003876 ORTHO05D004560 5.1e-21 105.1 150 44.7
arahy.Tifrunner.gnm1.ann1.CB0JBU Arachis hypogaea HOM05D003876 ORTHO05D004560 6.7e-21 104.8 151 42.4
Medtr3g051730 Medicago truncatula HOM05D003876 ORTHO05D004560 6.7e-21 104.8 148 43.9
Phvul.006G043300 Phaseolus vulgaris HOM05D003876 ORTHO05D004560 6.7e-21 104.8 157 42.0
Eucgr.F03461 Eucalyptus grandis HOM05D003876 ORTHO05D004560 8.7e-21 104.4 144 46.5
Ciclev10007711m.g Citrus clementina HOM05D003876 ORTHO05D004560 1.5e-20 103.6 148 45.9
vmacro22462 Vaccinium macrocarpon HOM05D003876 ORTHO05D004560 1.5e-20 103.6 132 47.7
Oeu042740.2 Olea europaea HOM05D003876 ORTHO05D004560 2.5e-20 102.8 139 43.9
VMungo0540G0476 Vigna mungo HOM05D003876 ORTHO05D004560 2.5e-20 102.8 151 42.4
Ca_01714_v3 Cicer arietinum L. HOM05D003876 ORTHO05D004560 7.4e-20 101.3 149 44.3
Ciclev10007833m.g Citrus clementina HOM05D003876 ORTHO05D004560 3.6e-19 99.0 148 45.3
Nn004s41399 Nelumbo nucifera HOM05D003876 ORTHO05D004560 3.6e-19 99.0 147 42.9
Duzib213G0609 Durio zibethinus HOM05D003876 ORTHO05D004560 8.1e-19 97.8 150 42.7
Cc02_g11170 Coffea canephora HOM05D003876 ORTHO05D004560 1.1e-18 97.4 145 42.8
COL.COLO4_07980 Corchorus olitorius HOM05D003876 ORTHO05D004560 5.3e-18 95.1 146 42.5
Peaxi162Scf01227g00036 Petunia axillaris HOM05D003876 ORTHO05D004560 9.0e-18 94.4 146 43.2
Atru.chr2.3354 Acer truncatum HOM05D003876 ORTHO05D004560 4.5e-17 92.0 147 40.8
MSTRG.9162 Avicennia marina HOM05D003876 ORTHO05D004560 4.5e-17 92.0 150 38.7
MBI16_g24182_MAGBIO Magnolia biondii HOM05D003876 ORTHO05D004560 7.6e-17 91.3 146 40.4
Gohir.D05G329600 Gossypium hirsutum HOM05D003876 ORTHO05D004560 1.7e-16 90.1 152 37.5
PGR031G0089 Punica granatum HOM05D003876 ORTHO05D004560 2.9e-16 89.4 150 40.0
Solyc02g065500.4 Solanum lycopersicum HOM05D003876 ORTHO05D004560 2.9e-16 89.4 148 39.2
Sopen02g015700 Solanum pennellii HOM05D003876 ORTHO05D004560 4.9e-16 88.6 148 39.2
CAN.G93.17 Capsicum annuum HOM05D003876 ORTHO05D004560 1.4e-15 87.0 145 38.6
Gorai.009G353000 Gossypium raimondii HOM05D003876 ORTHO05D004560 1.4e-15 87.0 145 37.9
EL10Ac4g07826 Beta vulgaris HOM05D003876 ORTHO05D004560 2.4e-15 86.3 152 37.5
C01p23130 Brassica napus HOM05D003876 ORTHO05D004560 2.4e-15 86.3 148 39.9
Sed0026666 Sechium edule HOM05D003876 ORTHO05D004560 2.4e-15 86.3 145 37.2
THA.LOC104817664 Tarenaya hassleriana HOM05D003876 ORTHO05D004560 4.2e-15 85.5 146 38.4
BolC1t02247H Brassica oleracea HOM05D003876 ORTHO05D004560 9.3e-15 84.3 148 39.2
AUR62020460 Chenopodium quinoa HOM05D003876 ORTHO05D004560 1.2e-14 84.0 145 38.6
ClCG09G008390 Citrullus lanatus HOM05D003876 ORTHO05D004560 2.1e-14 83.2 161 37.3
Gohir.A05G328600 Gossypium hirsutum HOM05D003876 ORTHO05D004560 2.7e-14 82.8 145 37.9
A01p18170 Brassica napus HOM05D003876 ORTHO05D004560 3.5e-14 82.4 147 40.1
BraA01t01772Z Brassica rapa HOM05D003876 ORTHO05D004560 3.5e-14 82.4 147 40.1
Lj4A311T24 Lonicera japonica HOM05D003876 ORTHO05D004560 3.5e-14 82.4 136 41.2
AUR62015755 Chenopodium quinoa HOM05D003876 ORTHO05D004560 4.6e-14 82.0 145 40.0
Sp7g24970 Schrenkiella parvula HOM05D003876 ORTHO05D004560 6.0e-14 81.6 144 37.5
Nitab4.5_0000071g0230 Nicotiana tabacum HOM05D003876 ORTHO05D004560 7.9e-14 81.3 141 39.0
Sc07g0002730 Simmondsia chinensis HOM05D003876 ORTHO05D004560 1.0e-13 80.9 145 39.3
MELO3C021122.2 Cucumis melo HOM05D003876 ORTHO05D004560 1.3e-13 80.5 160 36.9
Aqoxy1G03250 Aquilegia oxysepala HOM05D003876 ORTHO05D004560 1.8e-13 80.1 149 40.3
CsaV3_7G026680 Cucumis sativus L. HOM05D003876 ORTHO05D004560 3.0e-13 79.3 156 35.3
Thhalv10024185m.g Eutrema salsugineum HOM05D003876 ORTHO05D004560 3.9e-13 79.0 138 38.4
Cpa.g.sc25.33 Carica papaya HOM05D003876 ORTHO05D004560 8.7e-13 77.8 154 37.7
ATR0752G210 Amborella trichopoda HOM05D003876 ORTHO05D004560 1.1e-12 77.4 135 37.0
BcaNung03576 Brassica carinata HOM05D003876 ORTHO05D004560 1.5e-12 77.0 129 37.2
SalBow4G0132 Salvia bowleyana HOM05D003876 ORTHO05D004560 2.5e-12 76.3 142 36.6
SalBow4G0850 Salvia bowleyana HOM05D003876 ORTHO05D004560 3.3e-12 75.9 149 35.6
Hund02060 Selenicereus undatus HOM05D003876 ORTHO05D004560 1.3e-11 73.9 164 36.6
AL7G25820 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 2.1e-11 73.2 146 36.3
AT4G27010 Arabidopsis thaliana HOM05D003876 ORTHO05D004560 8.1e-11 71.2 144 34.0
Aa31LG5G10400 Aethionema arabicum HOM05D003876 ORTHO05D004560 1.1e-10 70.9 147 36.7
Ah.14g087580 Amaranthus hybridus HOM05D003876 ORTHO05D004560 2.4e-10 69.7 152 34.2
PSO675G8409 Papaver somniferum HOM05D003876 ORTHO05D004560 5.3e-10 68.6 160 37.5
AL1G51930 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 2.0e-09 66.6 141 34.0
Thhalv10009735m.g Eutrema salsugineum HOM05D003876 ORTHO05D004560 2.0e-09 66.6 152 34.2
PSO541G2928 Papaver somniferum HOM05D003876 ORTHO05D004560 2.6e-09 66.2 159 37.7
AL1G52050 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 7.6e-09 64.7 141 33.3
Carub.0007s1383 Capsella rubella HOM05D003876 ORTHO05D004560 1.3e-08 63.9 142 34.5
CDE12G0710 Ceratophyllum demersum HOM05D003876 ORTHO05D004560 1.7e-08 63.5 149 37.6
Hma1.2p1_1458F.1_g284750 Hydrangea macrophylla HOM05D003876 ORTHO05D004560 2.9e-08 62.8 82 46.3
Rhsim09G0102800 Rhododendron simsii HOM05D003876 ORTHO05D005443 4.9e-08 62.0 79 44.3
SEGI_24019 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 1.1e-07 60.8 144 31.9
Carub.0004s0902 Capsella rubella HOM05D003876 ORTHO05D004560 1.4e-07 60.5 145 34.5
SGA_v2.0_scaffold13G06370 Striga asiatica HOM05D003876 ORTHO05D004560 1.9e-07 60.1 146 35.6
CARHR229800 Cardamine hirsuta HOM05D003876 ORTHO05D004560 2.5e-07 59.7 150 32.0
ECA238G2706 Erigeron canadensis HOM05D003876 ORTHO05D004560 2.5e-07 59.7 148 31.8
SHI26628 Sapria himalayana HOM05D003876 ORTHO05D004560 7.1e-07 58.2 148 35.8
AT1G72270 Arabidopsis thaliana HOM05D003876 ORTHO05D004560 1.6e-06 57.0 142 34.5
Os04g0625300 Oryza sativa ssp. japonica HOM05D003876 ORTHO05D004560 2.7e-06 56.2 118 34.7


User provided reference genes

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